sapiopycommons 2025.5.30a548__tar.gz → 2025.6.3a554__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of sapiopycommons might be problematic. Click here for more details.
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/PKG-INFO +1 -1
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/pyproject.toml +1 -1
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/sapio_links.py +4 -12
- sapiopycommons-2025.5.30a548/src/sapiopycommons/ai/tool_of_tools.py +0 -917
- sapiopycommons-2025.5.30a548/src/sapiopycommons/general/html_formatter.py +0 -456
- sapiopycommons-2025.5.30a548/src/sapiopycommons/webhook/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/.gitignore +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/LICENSE +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/README.md +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/ai → sapiopycommons-2025.6.3a554/src/sapiopycommons/callbacks}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/callbacks/callback_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/callbacks/field_builder.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/chem/IndigoMolecules.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/chem/Molecules.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/callbacks → sapiopycommons-2025.6.3a554/src/sapiopycommons/chem}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/chem → sapiopycommons-2025.6.3a554/src/sapiopycommons/customreport}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/customreport/auto_pagers.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/customreport/column_builder.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/customreport/term_builder.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/customreport → sapiopycommons-2025.6.3a554/src/sapiopycommons/datatype}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/datatype/attachment_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/datatype/data_fields.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/datatype/pseudo_data_types.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/datatype → sapiopycommons-2025.6.3a554/src/sapiopycommons/eln}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/eln/experiment_cache.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/eln/experiment_handler.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/eln/experiment_report_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/eln/experiment_step_factory.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/eln/experiment_tags.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/eln/plate_designer.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/eln/step_creation.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/eln → sapiopycommons-2025.6.3a554/src/sapiopycommons/files}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/files/complex_data_loader.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/files/file_bridge.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/files/file_data_handler.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/files/file_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/files/file_validator.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/files/file_writer.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/flowcyto/flow_cyto.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/files → sapiopycommons-2025.6.3a554/src/sapiopycommons/general}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/accession_service.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/aliases.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/audit_log.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/custom_report_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/data_structure_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/directive_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/exceptions.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/popup_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/storage_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/general/time_util.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/multimodal/multimodal.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/general → sapiopycommons-2025.6.3a554/src/sapiopycommons/processtracking}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/processtracking/endpoints.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/processtracking → sapiopycommons-2025.6.3a554/src/sapiopycommons/recordmodel}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/recordmodel/record_handler.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/recordmodel → sapiopycommons-2025.6.3a554/src/sapiopycommons/rules}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/rules/eln_rule_handler.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/rules/on_save_rule_handler.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/samples/aliquot.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/rules → sapiopycommons-2025.6.3a554/src/sapiopycommons/sftpconnect}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
- {sapiopycommons-2025.5.30a548/src/sapiopycommons/sftpconnect → sapiopycommons-2025.6.3a554/src/sapiopycommons/webhook}/__init__.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/webhook/webhook_context.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/webhook/webhook_handlers.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/src/sapiopycommons/webhook/webservice_handlers.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/_do_not_add_init_py_here +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/accession_test.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/aliquot_test.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/bio_reg_test.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/chem_test.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/chem_test_curation_queue.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/curation_queue_test.sdf +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/data_type_models.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/flowcyto/8_color_ICS.wsp +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/flowcyto_test.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/kappa.chains.fasta +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/mafft_test.py +0 -0
- {sapiopycommons-2025.5.30a548 → sapiopycommons-2025.6.3a554}/tests/test.gb +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.3
|
|
2
2
|
Name: sapiopycommons
|
|
3
|
-
Version: 2025.
|
|
3
|
+
Version: 2025.6.3a554
|
|
4
4
|
Summary: Official Sapio Python API Utilities Package
|
|
5
5
|
Project-URL: Homepage, https://github.com/sapiosciences
|
|
6
6
|
Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
|
|
@@ -10,8 +10,7 @@ class SapioNavigationLinker:
|
|
|
10
10
|
Given a URL to a system's webservice API (example: https://company.exemplareln.com/webservice/api), construct
|
|
11
11
|
URLs for navigation links to various locations in the system.
|
|
12
12
|
"""
|
|
13
|
-
|
|
14
|
-
webservice_url: str
|
|
13
|
+
base_url: str
|
|
15
14
|
|
|
16
15
|
def __init__(self, url: str | SapioUser | SapioWebhookContext):
|
|
17
16
|
"""
|
|
@@ -22,14 +21,7 @@ class SapioNavigationLinker:
|
|
|
22
21
|
url = url.user.url
|
|
23
22
|
elif isinstance(url, SapioUser):
|
|
24
23
|
url = url.url
|
|
25
|
-
self.
|
|
26
|
-
self.client_url = url.rstrip("/").replace('webservice/api', 'veloxClient')
|
|
27
|
-
|
|
28
|
-
def homepage(self) -> str:
|
|
29
|
-
"""
|
|
30
|
-
:return: A URL for navigating to the system's homepage.
|
|
31
|
-
"""
|
|
32
|
-
return self.client_url + "/#view=homepage"
|
|
24
|
+
self.base_url = url.rstrip("/").replace('webservice/api', 'veloxClient')
|
|
33
25
|
|
|
34
26
|
def data_record(self, record_identifier: RecordIdentifier, data_type_name: DataTypeIdentifier | None = None) -> str:
|
|
35
27
|
"""
|
|
@@ -47,7 +39,7 @@ class SapioNavigationLinker:
|
|
|
47
39
|
if not data_type_name:
|
|
48
40
|
raise SapioException("Unable to create a data record link without a data type name. "
|
|
49
41
|
"Only a record ID was provided.")
|
|
50
|
-
return self.
|
|
42
|
+
return self.base_url + f"/#dataType={data_type_name};recordId={record_id};view=dataRecord"
|
|
51
43
|
|
|
52
44
|
def experiment(self, experiment: ExperimentIdentifier) -> str:
|
|
53
45
|
"""
|
|
@@ -55,4 +47,4 @@ class SapioNavigationLinker:
|
|
|
55
47
|
object, experiment protocol, or a notebook ID.
|
|
56
48
|
:return: A URL for navigating to the input experiment.
|
|
57
49
|
"""
|
|
58
|
-
return self.
|
|
50
|
+
return self.base_url + f"/#notebookExperimentId={AliasUtil.to_notebook_id(experiment)};view=eln"
|