sapiopycommons 2025.10.21a791__tar.gz → 2025.10.30a798__tar.gz
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- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/PKG-INFO +1 -1
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/pyproject.toml +1 -1
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/agent_service_base.py +7 -12
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/test_client.py +20 -5
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/.gitignore +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/LICENSE +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/README.md +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/converter_service_base.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/external_credentials.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/externalcredentials/external_credentials_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/externalcredentials/external_credentials_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/externalcredentials/external_credentials_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/converter/converter_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/item/item_container_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/script/script_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/step_output_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/step_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/step_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/step_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/tool/entry_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/plan/tool/tool_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2.pyi +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protoapi/session/sapio_conn_info_pb2_grpc.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/protobuf_utils.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/request_validation.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/ai/server.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/callbacks/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/callbacks/callback_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/callbacks/field_builder.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/chem/IndigoMolecules.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/chem/Molecules.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/chem/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/customreport/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/customreport/auto_pagers.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/customreport/column_builder.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/customreport/custom_report_builder.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/customreport/term_builder.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/datatype/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/datatype/attachment_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/datatype/data_fields.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/datatype/pseudo_data_types.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/experiment_cache.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/experiment_handler.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/experiment_report_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/experiment_step_factory.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/experiment_tags.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/plate_designer.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/eln/step_creation.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/assay_plate_reader.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/complex_data_loader.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/file_bridge.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/file_bridge_handler.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/file_data_handler.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/file_text_converter.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/file_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/file_validator.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/file_writer.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/files/temp_files.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/flowcyto/flow_cyto.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/accession_service.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/aliases.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/audit_log.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/custom_report_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/data_structure_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/directive_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/exceptions.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/html_formatter.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/popup_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/sapio_links.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/storage_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/general/time_util.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/multimodal/multimodal.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/multimodal/multimodal_data.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/processtracking/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/processtracking/endpoints.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/recordmodel/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/recordmodel/record_handler.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/rules/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/rules/eln_rule_handler.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/rules/on_save_rule_handler.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/samples/aliquot.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/sftpconnect/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/webhook/__init__.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/webhook/webhook_context.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/webhook/webhook_handlers.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/src/sapiopycommons/webhook/webservice_handlers.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/AF-A0A009IHW8-F1-model_v4.cif +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/_do_not_add_init_py_here +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/accession_test.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/aliquot_test.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/assay_plate_reader/BMGLabtech96.txt +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/assay_plate_reader/assay_plate_processing_test.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/bio_reg_test.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/chem_test.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/chem_test_curation_queue.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/curation_queue_test.sdf +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/data_type_models.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/file_compression_tests.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/flowcyto/8_color_ICS.wsp +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/flowcyto_test.py +0 -0
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- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/mafft_test.py +0 -0
- {sapiopycommons-2025.10.21a791 → sapiopycommons-2025.10.30a798}/tests/test.gb +0 -0
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Metadata-Version: 2.3
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Name: sapiopycommons
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Version: 2025.10.
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Version: 2025.10.30a798
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Summary: Official Sapio Python API Utilities Package
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Project-URL: Homepage, https://github.com/sapiosciences
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Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
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raise ValueError(f"No credentials found for name '{name}' and category '{category}'.")
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1011
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|
if len(matching_creds) > 1:
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|
-
raise ValueError(f"Multiple credentials found for
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|
+
raise ValueError(f"Multiple credentials found for name '{name}' and category '{category}'.")
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1008
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1014
1009
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return ExternalCredentials.from_pbo(matching_creds[0])
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for i, output in enumerate(self.binary_output, start=1):
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output: list[bytes]
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ret_val += f"\tBinary Output {i}:\n"
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for binary in output:
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for j, binary in enumerate(output):
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if j > 5:
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ret_val += f"\t\tAnd {len(output) - 5} more binary items...\n"
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break
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ret_val += f"\t\t{len(binary)} byte(s): {binary[:50]}...\n"
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ret_val += f"CSV Output: {sum(len(x) for x in self.csv_output)} item(s) across {len(self.csv_output)} output(s)\n"
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@@ -134,14 +137,20 @@ class AgentOutput:
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output: list[dict[str, Any]]
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ret_val += f"\tCSV Output {i}:\n"
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ret_val += f"\t\tHeaders: {', '.join(output[0].keys())}\n"
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for j, csv_row in enumerate(output):
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+
for j, csv_row in enumerate(output, start=1):
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+
if j > 5:
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+
ret_val += f"\t\tAnd {len(output) - 5} more CSV rows...\n"
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+
break
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ret_val += f"\t\t{j}: {', '.join(f'{v}' for k, v in csv_row.items())}\n"
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145
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140
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ret_val += f"JSON Output: {sum(len(x) for x in self.json_output)} item(s) across {len(self.json_output)} output(s)\n"
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141
147
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for i, output in enumerate(self.json_output, start=1):
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142
148
|
output: list[Any]
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143
149
|
ret_val += f"\tJSON Output {i}:\n"
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144
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-
for json_obj in output:
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+
for j, json_obj in enumerate(output, start=1):
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+
if j > 5:
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+
ret_val += f"\t\tAnd {len(output) - 5} more JSON items...\n"
|
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+
break
|
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145
154
|
ret_val += f"\t\t"
|
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146
155
|
ret_val += json.dumps(json_obj, indent=2).replace("\n", "\n\t\t") + "\n"
|
|
147
156
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|
|
@@ -149,11 +158,17 @@ class AgentOutput:
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|
|
149
158
|
for i, output in enumerate(self.text_output, start=1):
|
|
150
159
|
output: list[str]
|
|
151
160
|
ret_val += f"\tText Output {i}:\n"
|
|
152
|
-
for text in output:
|
|
161
|
+
for j, text in enumerate(output, start=1):
|
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|
+
if j > 5:
|
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163
|
+
ret_val += f"\t\tAnd {len(output) - 5} more text items...\n"
|
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164
|
+
break
|
|
153
165
|
ret_val += f"\t\t{text}\n"
|
|
154
166
|
|
|
155
167
|
ret_val += f"New Records: {len(self.new_records)} item(s)\n"
|
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156
|
-
for record in self.new_records:
|
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168
|
+
for i, record in enumerate(self.new_records, start=1):
|
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169
|
+
if i > 5:
|
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170
|
+
ret_val += f"\tAnd {len(self.new_records) - 5} more new records...\n"
|
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171
|
+
break
|
|
157
172
|
ret_val += f"{json.dumps(record, indent=2)}\n"
|
|
158
173
|
|
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159
174
|
ret_val += f"Logs: {len(self.logs)} item(s)\n"
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