sapiopycommons 2025.10.1a772__tar.gz → 2025.10.2a773__tar.gz

{sapiopycommons-2025.10.1a772 → sapiopycommons-2025.10.2a773}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: sapiopycommons
-Version: 2025.10.1a772
+Version: 2025.10.2a773
 Summary: Official Sapio Python API Utilities Package
 Project-URL: Homepage, https://github.com/sapiosciences
 Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>

{sapiopycommons-2025.10.1a772 → sapiopycommons-2025.10.2a773}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "sapiopycommons"
-version='2025.10.01a772'
+version='2025.10.02a773'
 authors = [
     { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
     { name="Yechen Qiao", email="yqiao@sapiosciences.com" },

sapiopycommons-2025.10.2a773/src/sapiopycommons/ai/converter_service_base.py

@@ -0,0 +1,163 @@
+from __future__ import annotations
+
+import traceback
+from abc import ABC, abstractmethod
+
+from grpc import ServicerContext
+
+from sapiopycommons.ai.protoapi.plan.converter.converter_pb2 import ConverterDetailsResponsePbo, ConvertResponsePbo, \
+    ConvertRequestPbo, ConverterDetailsRequestPbo, ContentTypePairPbo
+from sapiopycommons.ai.protoapi.plan.converter.converter_pb2_grpc import ConverterServiceServicer
+from sapiopycommons.ai.protoapi.plan.item.item_container_pb2 import ContentTypePbo, StepItemContainerPbo
+from sapiopycommons.files.temp_files import TempFileHandler
+
+
+class ConverterServiceBase(ConverterServiceServicer, ABC):
+    debug_mode: bool = False
+
+    def GetConverterDetails(self, request: ConverterDetailsRequestPbo, context: ServicerContext) \
+            -> ConverterDetailsResponsePbo:
+        try:
+            supported_types: list[ContentTypePairPbo] = []
+            for c in self.register_converters():
+                converter = c(self.debug_mode)
+                supported_types.append(ContentTypePairPbo(
+                    converter_name=converter.name(),
+                    input_content_type=converter.input_type_pbo(),
+                    output_content_type=converter.output_type_pbo()
+                ))
+            return ConverterDetailsResponsePbo(supported_types=supported_types, service_name=self.name())
+        except Exception as e:
+            print(f"CRITICAL ERROR: {e}")
+            print(traceback.format_exc())
+            return ConverterDetailsResponsePbo()
+
+    def ConvertContent(self, request: ConvertRequestPbo, context: ServicerContext) -> ConvertResponsePbo:
+        try:
+            input_container: StepItemContainerPbo = request.item_container
+            input_type: ContentTypePbo = input_container.content_type
+            target_type: ContentTypePbo = request.target_content_type
+
+            use_converter: ConverterBase | None = None
+            for c in self.register_converters():
+                converter = c(self.debug_mode)
+                if converter.can_convert(input_type, target_type):
+                    use_converter = converter
+                    break
+            if use_converter is None:
+                raise ValueError(f"No converter found for converting {input_type.name} ({', '.join(input_type.extensions)}) "
+                                 f"to {target_type.name} ({', '.join(target_type.extensions)}).")
+
+            return ConvertResponsePbo(item_container=self.run(use_converter, input_container))
+        except Exception as e:
+            print(f"CRITICAL ERROR: {e}")
+            print(traceback.format_exc())
+            return ConvertResponsePbo()
+
+    @staticmethod
+    @abstractmethod
+    def name() -> str:
+        """
+        :return: The name of this converter service.
+        """
+        pass
+
+    @abstractmethod
+    def register_converters(self) -> list[type[ConverterBase]]:
+        """
+        Register converter types with this service. Provided converters should implement the ConverterBase class.
+
+        :return: A list of converters to register to this service.
+        """
+        pass
+
+    def run(self, converter: ConverterBase, input_container: StepItemContainerPbo) -> StepItemContainerPbo:
+        try:
+            return converter.convert(input_container)
+        finally:
+            # Clean up any temporary files created by the converter. If in debug mode, then log the files instead
+            # so that they can be manually inspected.
+            if self.debug_mode:
+                print("Temporary files/directories created during converter execution:")
+                for directory in converter.temp_data.directories:
+                    print(f"\tDirectory: {directory}")
+                for file in converter.temp_data.files:
+                    print(f"\tFile: {file}")
+            else:
+                converter.temp_data.cleanup()
+
+
+class ConverterBase(ABC):
+    temp_data: TempFileHandler
+    debug_mode: bool
+
+    def __init__(self, debug_mode: bool):
+        self.temp_data = TempFileHandler()
+        self.debug_mode = debug_mode
+
+    def name(self) -> str:
+        """
+        :return: The name of this converter, typically in the format "<input_type> to <output_type>".
+        """
+        return self.input_type() + " to " + self.output_type()
+
+    def input_type_pbo(self) -> ContentTypePbo:
+        """
+        :return: The input content type this converter accepts as a ContentTypePbo.
+        """
+        return ContentTypePbo(name=self.input_type(), extensions=self.input_file_extensions())
+
+    def output_type_pbo(self) -> ContentTypePbo:
+        """
+        :return: The output content type this converter produces as a ContentTypePbo.
+        """
+        return ContentTypePbo(name=self.output_type(), extensions=self.output_file_extensions())
+
+    @abstractmethod
+    def input_type(self) -> str:
+        """
+        :return: The input content type this converter accepts.
+        """
+        pass
+
+    @abstractmethod
+    def input_file_extensions(self) -> list[str]:
+        """
+        :return: A list of file extensions this converter accepts as input.
+        """
+        pass
+
+    @abstractmethod
+    def output_type(self) -> str:
+        """
+        :return: The output content type this converter produces.
+        """
+        pass
+
+    @abstractmethod
+    def output_file_extensions(self) -> list[str]:
+        """
+        :return: A list of file extensions this converter produces as output.
+        """
+        pass
+
+    def can_convert(self, input_type: ContentTypePbo, target_type: ContentTypePbo) -> bool:
+        """
+        Check if this converter can convert from the input type to the target type.
+
+        :param input_type: The input content type.
+        :param target_type: The target content type.
+        :return: True if this converter can convert from the input type to the target type, False otherwise.
+        """
+        return (self.input_type().lower() == input_type.name.lower()
+                and self.output_type().lower() == target_type.name.lower())
+
+    @abstractmethod
+    def convert(self, content: StepItemContainerPbo) -> StepItemContainerPbo:
+        """
+        Convert the provided content from the input type to the output type.
+
+        :param content: The content to convert.
+        :return: The converted content.
+        """
+        pass

sapiopycommons-2025.10.2a773/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.py

@@ -0,0 +1,43 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: sapiopycommons/ai/protoapi/fielddefinitions/fields.proto
+# Protobuf Python Version: 5.29.0
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    29,
+    0,
+    '',
+    'sapiopycommons/ai/protoapi/fielddefinitions/fields.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\n8sapiopycommons/ai/protoapi/fielddefinitions/fields.proto\"s\n\rFieldValuePbo\x12\x16\n\x0cstring_value\x18\x0f \x01(\tH\x00\x12\x13\n\tint_value\x18\x0e \x01(\x03H\x00\x12\x16\n\x0c\x64ouble_value\x18\r \x01(\x01H\x00\x12\x14\n\nbool_value\x18\x0c \x01(\x08H\x00\x42\x07\n\x05\x66ield\"\x80\x01\n\x10\x46ieldValueMapPbo\x12-\n\x06\x66ields\x18\x01 \x03(\x0b\x32\x1d.FieldValueMapPbo.FieldsEntry\x1a=\n\x0b\x46ieldsEntry\x12\x0b\n\x03key\x18\x01 \x01(\t\x12\x1d\n\x05value\x18\x02 \x01(\x0b\x32\x0e.FieldValuePbo:\x02\x38\x01\x42\'\n#com.velox.protoapi.fielddefinitionsP\x01\x62\x06proto3')
+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'sapiopycommons.ai.protoapi.fielddefinitions.fields_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n#com.velox.protoapi.fielddefinitionsP\001'
+  _globals['_FIELDVALUEMAPPBO_FIELDSENTRY']._loaded_options = None
+  _globals['_FIELDVALUEMAPPBO_FIELDSENTRY']._serialized_options = b'8\001'
+  _globals['_FIELDVALUEPBO']._serialized_start=60
+  _globals['_FIELDVALUEPBO']._serialized_end=175
+  _globals['_FIELDVALUEMAPPBO']._serialized_start=178
+  _globals['_FIELDVALUEMAPPBO']._serialized_end=306
+  _globals['_FIELDVALUEMAPPBO_FIELDSENTRY']._serialized_start=245
+  _globals['_FIELDVALUEMAPPBO_FIELDSENTRY']._serialized_end=306
+# @@protoc_insertion_point(module_scope)

sapiopycommons-2025.10.2a773/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2.pyi

@@ -0,0 +1,31 @@
+from google.protobuf.internal import containers as _containers
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import message as _message
+from typing import ClassVar as _ClassVar, Mapping as _Mapping, Optional as _Optional, Union as _Union
+
+DESCRIPTOR: _descriptor.FileDescriptor
+
+class FieldValuePbo(_message.Message):
+    __slots__ = ("string_value", "int_value", "double_value", "bool_value")
+    STRING_VALUE_FIELD_NUMBER: _ClassVar[int]
+    INT_VALUE_FIELD_NUMBER: _ClassVar[int]
+    DOUBLE_VALUE_FIELD_NUMBER: _ClassVar[int]
+    BOOL_VALUE_FIELD_NUMBER: _ClassVar[int]
+    string_value: str
+    int_value: int
+    double_value: float
+    bool_value: bool
+    def __init__(self, string_value: _Optional[str] = ..., int_value: _Optional[int] = ..., double_value: _Optional[float] = ..., bool_value: bool = ...) -> None: ...
+
+class FieldValueMapPbo(_message.Message):
+    __slots__ = ("fields",)
+    class FieldsEntry(_message.Message):
+        __slots__ = ("key", "value")
+        KEY_FIELD_NUMBER: _ClassVar[int]
+        VALUE_FIELD_NUMBER: _ClassVar[int]
+        key: str
+        value: FieldValuePbo
+        def __init__(self, key: _Optional[str] = ..., value: _Optional[_Union[FieldValuePbo, _Mapping]] = ...) -> None: ...
+    FIELDS_FIELD_NUMBER: _ClassVar[int]
+    fields: _containers.MessageMap[str, FieldValuePbo]
+    def __init__(self, fields: _Optional[_Mapping[str, FieldValuePbo]] = ...) -> None: ...

sapiopycommons-2025.10.2a773/src/sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py

@@ -0,0 +1,24 @@
+# Generated by the gRPC Python protocol compiler plugin. DO NOT EDIT!
+"""Client and server classes corresponding to protobuf-defined services."""
+import grpc
+import warnings
+
+
+GRPC_GENERATED_VERSION = '1.70.0'
+GRPC_VERSION = grpc.__version__
+_version_not_supported = False
+
+try:
+    from grpc._utilities import first_version_is_lower
+    _version_not_supported = first_version_is_lower(GRPC_VERSION, GRPC_GENERATED_VERSION)
+except ImportError:
+    _version_not_supported = True
+
+if _version_not_supported:
+    raise RuntimeError(
+        f'The grpc package installed is at version {GRPC_VERSION},'
+        + f' but the generated code in sapiopycommons/ai/protoapi/fielddefinitions/fields_pb2_grpc.py depends on'
+        + f' grpcio>={GRPC_GENERATED_VERSION}.'
+        + f' Please upgrade your grpc module to grpcio>={GRPC_GENERATED_VERSION}'
+        + f' or downgrade your generated code using grpcio-tools<={GRPC_VERSION}.'
+    )

sapiopycommons-2025.10.2a773/src/sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def_pb2.py

@@ -0,0 +1,123 @@
+# -*- coding: utf-8 -*-
+# Generated by the protocol buffer compiler.  DO NOT EDIT!
+# NO CHECKED-IN PROTOBUF GENCODE
+# source: sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def.proto
+# Protobuf Python Version: 5.29.0
+"""Generated protocol buffer code."""
+from google.protobuf import descriptor as _descriptor
+from google.protobuf import descriptor_pool as _descriptor_pool
+from google.protobuf import runtime_version as _runtime_version
+from google.protobuf import symbol_database as _symbol_database
+from google.protobuf.internal import builder as _builder
+_runtime_version.ValidateProtobufRuntimeVersion(
+    _runtime_version.Domain.PUBLIC,
+    5,
+    29,
+    0,
+    '',
+    'sapiopycommons/ai/protoapi/fielddefinitions/velox_field_def.proto'
+)
+# @@protoc_insertion_point(imports)
+
+_sym_db = _symbol_database.Default()
+
+
+
+
+DESCRIPTOR = _descriptor_pool.Default().AddSerializedFile(b'\nAsapiopycommons/ai/protoapi/fielddefinitions/velox_field_def.proto\"D\n\x11\x46ieldValidatorPbo\x12\x18\n\x10validation_regex\x18\x01 \x01(\t\x12\x15\n\rerror_message\x18\x02 \x01(\t\"D\n\rColorRangePbo\x12\x12\n\nfrom_value\x18\x01 \x01(\x01\x12\x10\n\x08to_value\x18\x02 \x01(\x01\x12\r\n\x05\x63olor\x18\x03 \x01(\t\"K\n\x1d\x42ooleanDependentFieldEntryPbo\x12\x0b\n\x03key\x18\x01 \x01(\x08\x12\x1d\n\x15\x64\x65pendent_field_names\x18\x02 \x03(\t\"M\n\x1fSelectionDependentFieldEntryPbo\x12\x0b\n\x03key\x18\x01 \x01(\t\x12\x1d\n\x15\x64\x65pendent_field_names\x18\x02 \x03(\t\"H\n\x1a\x45numDependentFieldEntryPbo\x12\x0b\n\x03key\x18\x01 \x01(\x05\x12\x1d\n\x15\x64\x65pendent_field_names\x18\x02 \x03(\t\",\n\x15ProcessDetailEntryPbo\x12\x13\n\x0btodo_fields\x18\x01 \x03(\t\"\xbd\x01\n\x14\x42ooleanPropertiesPbo\x12\x1a\n\rdefault_value\x18\x01 \x01(\x08H\x00\x88\x01\x01\x12\x1c\n\x14is_process_todo_item\x18\x02 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+
+_globals = globals()
+_builder.BuildMessageAndEnumDescriptors(DESCRIPTOR, _globals)
+_builder.BuildTopDescriptorsAndMessages(DESCRIPTOR, 'sapiopycommons.ai.protoapi.fielddefinitions.velox_field_def_pb2', _globals)
+if not _descriptor._USE_C_DESCRIPTORS:
+  _globals['DESCRIPTOR']._loaded_options = None
+  _globals['DESCRIPTOR']._serialized_options = b'\n#com.velox.protoapi.fielddefinitionsP\001'
+  _globals['_SELECTIONPROPERTIESPBO_COLORMAPPINGENTRY']._loaded_options = None
+  _globals['_SELECTIONPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_options = b'8\001'
+  _globals['_SELECTIONPROPERTIESPBO_PROCESSDETAILMAPENTRY']._loaded_options = None
+  _globals['_SELECTIONPROPERTIESPBO_PROCESSDETAILMAPENTRY']._serialized_options = b'8\001'
+  _globals['_PICKLISTPROPERTIESPBO_COLORMAPPINGENTRY']._loaded_options = None
+  _globals['_PICKLISTPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_options = b'8\001'
+  _globals['_PICKLISTPROPERTIESPBO_PROCESSDETAILMAPENTRY']._loaded_options = None
+  _globals['_PICKLISTPROPERTIESPBO_PROCESSDETAILMAPENTRY']._serialized_options = b'8\001'
+  _globals['_ENUMPROPERTIESPBO_COLORMAPPINGENTRY']._loaded_options = None
+  _globals['_ENUMPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_options = b'8\001'
+  _globals['_FIELDTYPEPBO']._serialized_start=7308
+  _globals['_FIELDTYPEPBO']._serialized_end=7645
+  _globals['_SORTDIRECTIONPBO']._serialized_start=7648
+  _globals['_SORTDIRECTIONPBO']._serialized_end=7784
+  _globals['_FONTSIZEPBO']._serialized_start=7786
+  _globals['_FONTSIZEPBO']._serialized_end=7890
+  _globals['_TEXTDECORATIONPBO']._serialized_start=7893
+  _globals['_TEXTDECORATIONPBO']._serialized_end=8037
+  _globals['_STRINGFORMATPBO']._serialized_start=8039
+  _globals['_STRINGFORMATPBO']._serialized_end=8137
+  _globals['_DOUBLEFORMATPBO']._serialized_start=8139
+  _globals['_DOUBLEFORMATPBO']._serialized_end=8245
+  _globals['_FIELDVALIDATORPBO']._serialized_start=69
+  _globals['_FIELDVALIDATORPBO']._serialized_end=137
+  _globals['_COLORRANGEPBO']._serialized_start=139
+  _globals['_COLORRANGEPBO']._serialized_end=207
+  _globals['_BOOLEANDEPENDENTFIELDENTRYPBO']._serialized_start=209
+  _globals['_BOOLEANDEPENDENTFIELDENTRYPBO']._serialized_end=284
+  _globals['_SELECTIONDEPENDENTFIELDENTRYPBO']._serialized_start=286
+  _globals['_SELECTIONDEPENDENTFIELDENTRYPBO']._serialized_end=363
+  _globals['_ENUMDEPENDENTFIELDENTRYPBO']._serialized_start=365
+  _globals['_ENUMDEPENDENTFIELDENTRYPBO']._serialized_end=437
+  _globals['_PROCESSDETAILENTRYPBO']._serialized_start=439
+  _globals['_PROCESSDETAILENTRYPBO']._serialized_end=483
+  _globals['_BOOLEANPROPERTIESPBO']._serialized_start=486
+  _globals['_BOOLEANPROPERTIESPBO']._serialized_end=675
+  _globals['_DATEPROPERTIESPBO']._serialized_start=677
+  _globals['_DATEPROPERTIESPBO']._serialized_end=792
+  _globals['_DOUBLEPROPERTIESPBO']._serialized_start=795
+  _globals['_DOUBLEPROPERTIESPBO']._serialized_end=1116
+  _globals['_INTEGERPROPERTIESPBO']._serialized_start=1119
+  _globals['_INTEGERPROPERTIESPBO']._serialized_end=1481
+  _globals['_LONGPROPERTIESPBO']._serialized_start=1484
+  _globals['_LONGPROPERTIESPBO']._serialized_end=1843
+  _globals['_SHORTPROPERTIESPBO']._serialized_start=1846
+  _globals['_SHORTPROPERTIESPBO']._serialized_end=2206
+  _globals['_SELECTIONPROPERTIESPBO']._serialized_start=2209
+  _globals['_SELECTIONPROPERTIESPBO']._serialized_end=2944
+  _globals['_SELECTIONPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_start=2792
+  _globals['_SELECTIONPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_end=2843
+  _globals['_SELECTIONPROPERTIESPBO_PROCESSDETAILMAPENTRY']._serialized_start=2845
+  _globals['_SELECTIONPROPERTIESPBO_PROCESSDETAILMAPENTRY']._serialized_end=2924
+  _globals['_STRINGPROPERTIESPBO']._serialized_start=2947
+  _globals['_STRINGPROPERTIESPBO']._serialized_end=3298
+  _globals['_SIDELINKPROPERTIESPBO']._serialized_start=3301
+  _globals['_SIDELINKPROPERTIESPBO']._serialized_end=3510
+  _globals['_PICKLISTPROPERTIESPBO']._serialized_start=3513
+  _globals['_PICKLISTPROPERTIESPBO']._serialized_end=4137
+  _globals['_PICKLISTPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_start=2792
+  _globals['_PICKLISTPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_end=2843
+  _globals['_PICKLISTPROPERTIESPBO_PROCESSDETAILMAPENTRY']._serialized_start=2845
+  _globals['_PICKLISTPROPERTIESPBO_PROCESSDETAILMAPENTRY']._serialized_end=2924
+  _globals['_PARENTLINKPROPERTIESPBO']._serialized_start=4139
+  _globals['_PARENTLINKPROPERTIESPBO']._serialized_end=4187
+  _globals['_MULTIPARENTPROPERTIESPBO']._serialized_start=4189
+  _globals['_MULTIPARENTPROPERTIESPBO']._serialized_end=4215
+  _globals['_IDENTIFIERPROPERTIESPBO']._serialized_start=4217
+  _globals['_IDENTIFIERPROPERTIESPBO']._serialized_end=4265
+  _globals['_FILEBLOBPROPERTIESPBO']._serialized_start=4267
+  _globals['_FILEBLOBPROPERTIESPBO']._serialized_end=4290
+  _globals['_ENUMPROPERTIESPBO']._serialized_start=4293
+  _globals['_ENUMPROPERTIESPBO']._serialized_end=4607
+  _globals['_ENUMPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_start=2792
+  _globals['_ENUMPROPERTIESPBO_COLORMAPPINGENTRY']._serialized_end=2843
+  _globals['_DATERANGEPROPERTIESPBO']._serialized_start=4609
+  _globals['_DATERANGEPROPERTIESPBO']._serialized_end=4727
+  _globals['_CHILDLINKPROPERTIESPBO']._serialized_start=4729
+  _globals['_CHILDLINKPROPERTIESPBO']._serialized_end=4799
+  _globals['_ACTIONSTRINGPROPERTIESPBO']._serialized_start=4802
+  _globals['_ACTIONSTRINGPROPERTIESPBO']._serialized_end=5032
+  _globals['_ACTIONPROPERTIESPBO']._serialized_start=5035
+  _globals['_ACTIONPROPERTIESPBO']._serialized_end=5169
+  _globals['_ACCESSIONPROPERTIESPBO']._serialized_start=5172
+  _globals['_ACCESSIONPROPERTIESPBO']._serialized_end=5412
+  _globals['_VELOXFIELDDEFPBO']._serialized_start=5415
+  _globals['_VELOXFIELDDEFPBO']._serialized_end=7235
+  _globals['_VELOXFIELDDEFLISTPBO']._serialized_start=7237
+  _globals['_VELOXFIELDDEFLISTPBO']._serialized_end=7305
+# @@protoc_insertion_point(module_scope)