sapiopycommons 2024.11.7a354__tar.gz → 2024.11.8a359__tar.gz

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  1. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/.gitignore +0 -2
  2. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/PKG-INFO +2 -4
  3. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/README.md +0 -1
  4. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/pyproject.toml +2 -2
  5. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/callbacks/callback_util.py +83 -532
  6. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/chem/IndigoMolecules.py +0 -2
  7. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/chem/Molecules.py +18 -77
  8. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/datatype/attachment_util.py +10 -11
  9. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/eln/experiment_handler.py +70 -272
  10. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/files/complex_data_loader.py +4 -5
  11. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/files/file_bridge.py +24 -31
  12. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/files/file_data_handler.py +5 -2
  13. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/files/file_util.py +9 -59
  14. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/files/file_validator.py +6 -92
  15. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/files/file_writer.py +15 -44
  16. sapiopycommons-2024.11.8a359/src/sapiopycommons/general/aliases.py +82 -0
  17. sapiopycommons-2024.11.8a359/src/sapiopycommons/general/custom_report_util.py +90 -0
  18. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/general/exceptions.py +8 -21
  19. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/general/popup_util.py +0 -21
  20. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/general/time_util.py +2 -8
  21. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/processtracking/endpoints.py +22 -22
  22. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/recordmodel/record_handler.py +97 -481
  23. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/rules/eln_rule_handler.py +25 -34
  24. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/rules/on_save_rule_handler.py +31 -34
  25. sapiopycommons-2024.11.8a359/src/sapiopycommons/webhook/webhook_handlers.py +239 -0
  26. sapiopycommons-2024.11.7a354/src/sapiopycommons/callbacks/field_builder.py +0 -537
  27. sapiopycommons-2024.11.7a354/src/sapiopycommons/customreport/column_builder.py +0 -60
  28. sapiopycommons-2024.11.7a354/src/sapiopycommons/customreport/custom_report_builder.py +0 -130
  29. sapiopycommons-2024.11.7a354/src/sapiopycommons/customreport/term_builder.py +0 -299
  30. sapiopycommons-2024.11.7a354/src/sapiopycommons/datatype/data_fields.py +0 -61
  31. sapiopycommons-2024.11.7a354/src/sapiopycommons/datatype/pseudo_data_types.py +0 -440
  32. sapiopycommons-2024.11.7a354/src/sapiopycommons/eln/experiment_report_util.py +0 -653
  33. sapiopycommons-2024.11.7a354/src/sapiopycommons/files/file_bridge_handler.py +0 -340
  34. sapiopycommons-2024.11.7a354/src/sapiopycommons/flowcyto/flow_cyto.py +0 -77
  35. sapiopycommons-2024.11.7a354/src/sapiopycommons/flowcyto/flowcyto_data.py +0 -75
  36. sapiopycommons-2024.11.7a354/src/sapiopycommons/general/accession_service.py +0 -375
  37. sapiopycommons-2024.11.7a354/src/sapiopycommons/general/aliases.py +0 -283
  38. sapiopycommons-2024.11.7a354/src/sapiopycommons/general/audit_log.py +0 -189
  39. sapiopycommons-2024.11.7a354/src/sapiopycommons/general/custom_report_util.py +0 -265
  40. sapiopycommons-2024.11.7a354/src/sapiopycommons/general/sapio_links.py +0 -50
  41. sapiopycommons-2024.11.7a354/src/sapiopycommons/multimodal/multimodal.py +0 -146
  42. sapiopycommons-2024.11.7a354/src/sapiopycommons/multimodal/multimodal_data.py +0 -489
  43. sapiopycommons-2024.11.7a354/src/sapiopycommons/processtracking/custom_workflow_handler.py +0 -406
  44. sapiopycommons-2024.11.7a354/src/sapiopycommons/sftpconnect/__init__.py +0 -0
  45. sapiopycommons-2024.11.7a354/src/sapiopycommons/sftpconnect/sftp_builder.py +0 -69
  46. sapiopycommons-2024.11.7a354/src/sapiopycommons/webhook/__init__.py +0 -0
  47. sapiopycommons-2024.11.7a354/src/sapiopycommons/webhook/webhook_context.py +0 -39
  48. sapiopycommons-2024.11.7a354/src/sapiopycommons/webhook/webhook_handlers.py +0 -398
  49. sapiopycommons-2024.11.7a354/src/sapiopycommons/webhook/webservice_handlers.py +0 -67
  50. sapiopycommons-2024.11.7a354/tests/_do_not_add_init_py_here +0 -0
  51. sapiopycommons-2024.11.7a354/tests/accession_test.py +0 -41
  52. sapiopycommons-2024.11.7a354/tests/bio_reg_test.py +0 -26
  53. sapiopycommons-2024.11.7a354/tests/chem_test.py +0 -229
  54. sapiopycommons-2024.11.7a354/tests/chem_test_curation_queue.py +0 -31
  55. sapiopycommons-2024.11.7a354/tests/curation_queue_test.sdf +0 -168
  56. sapiopycommons-2024.11.7a354/tests/data_type_models.py +0 -58006
  57. sapiopycommons-2024.11.7a354/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
  58. sapiopycommons-2024.11.7a354/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
  59. sapiopycommons-2024.11.7a354/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
  60. sapiopycommons-2024.11.7a354/tests/flowcyto/8_color_ICS.wsp +0 -4833
  61. sapiopycommons-2024.11.7a354/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
  62. sapiopycommons-2024.11.7a354/tests/flowcyto_test.py +0 -71
  63. sapiopycommons-2024.11.7a354/tests/kappa.chains.fasta +0 -45
  64. sapiopycommons-2024.11.7a354/tests/mafft_test.py +0 -66
  65. sapiopycommons-2024.11.7a354/tests/test.gb +0 -124
  66. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/LICENSE +0 -0
  67. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/__init__.py +0 -0
  68. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/callbacks/__init__.py +0 -0
  69. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/chem/__init__.py +0 -0
  70. {sapiopycommons-2024.11.7a354/src/sapiopycommons/customreport → sapiopycommons-2024.11.8a359/src/sapiopycommons/datatype}/__init__.py +0 -0
  71. {sapiopycommons-2024.11.7a354/src/sapiopycommons/datatype → sapiopycommons-2024.11.8a359/src/sapiopycommons/eln}/__init__.py +0 -0
  72. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/eln/plate_designer.py +0 -0
  73. {sapiopycommons-2024.11.7a354/src/sapiopycommons/eln → sapiopycommons-2024.11.8a359/src/sapiopycommons/files}/__init__.py +0 -0
  74. {sapiopycommons-2024.11.7a354/src/sapiopycommons/files → sapiopycommons-2024.11.8a359/src/sapiopycommons/general}/__init__.py +0 -0
  75. {sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/src/sapiopycommons/general/storage_util.py +0 -0
  76. {sapiopycommons-2024.11.7a354/src/sapiopycommons/general → sapiopycommons-2024.11.8a359/src/sapiopycommons/processtracking}/__init__.py +0 -0
  77. {sapiopycommons-2024.11.7a354/src/sapiopycommons/processtracking → sapiopycommons-2024.11.8a359/src/sapiopycommons/recordmodel}/__init__.py +0 -0
  78. {sapiopycommons-2024.11.7a354/src/sapiopycommons/recordmodel → sapiopycommons-2024.11.8a359/src/sapiopycommons/rules}/__init__.py +0 -0
  79. {sapiopycommons-2024.11.7a354/src/sapiopycommons/rules → sapiopycommons-2024.11.8a359/src/sapiopycommons/webhook}/__init__.py +0 -0
{sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/.gitignore RENAMED
@@ -6,5 +6,3 @@
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  **/*.versionsBackup
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  **/target
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  /sapiopycommons/sapiopycommons.egg-info/
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- /sapiopycommons/dist**
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- /.pydevproject
{sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/PKG-INFO RENAMED
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  Metadata-Version: 2.3
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  Name: sapiopycommons
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- Version: 2024.11.7a354
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+ Version: 2024.11.8a359
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  Summary: Official Sapio Python API Utilities Package
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  Project-URL: Homepage, https://github.com/sapiosciences
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  Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
@@ -17,8 +17,7 @@ Classifier: Programming Language :: Python :: 3.10
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  Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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  Classifier: Topic :: Software Development :: Libraries :: Python Modules
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  Requires-Python: >=3.10
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- Requires-Dist: databind>=4.5
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- Requires-Dist: sapiopylib>=2024.5.24.210
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+ Requires-Dist: sapiopylib>=2023.12.13.174
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  Description-Content-Type: text/markdown
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@@ -51,7 +50,6 @@ This license does not provide any rights to use any other copyrighted artifacts
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  ## Dependencies
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  The following dependencies are required for this package:
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  - [sapiopylib - The official Sapio Informatics Platform Python API package.](https://pypi.org/project/sapiopylib/)
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- - [databind - Databind is a library inspired by jackson-databind to de-/serialize Python dataclasses.](https://pypi.org/project/databind/)
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  ## Getting Help
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  If you have a support contract with Sapio Sciences, please use our [technical support channels](https://sapio-sciences.atlassian.net/servicedesk/customer/portals).
{sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/README.md RENAMED
@@ -28,7 +28,6 @@ This license does not provide any rights to use any other copyrighted artifacts
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  ## Dependencies
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  The following dependencies are required for this package:
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  - [sapiopylib - The official Sapio Informatics Platform Python API package.](https://pypi.org/project/sapiopylib/)
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- - [databind - Databind is a library inspired by jackson-databind to de-/serialize Python dataclasses.](https://pypi.org/project/databind/)
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  ## Getting Help
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  If you have a support contract with Sapio Sciences, please use our [technical support channels](https://sapio-sciences.atlassian.net/servicedesk/customer/portals).
{sapiopycommons-2024.11.7a354 → sapiopycommons-2024.11.8a359}/pyproject.toml RENAMED
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  [project]
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  name = "sapiopycommons"
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- version='2024.11.07a354'
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+ version='2024.11.08a359'
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  authors = [
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  { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
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  { name="Yechen Qiao", email="yqiao@sapiosciences.com" },
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  readme = "README.md"
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  requires-python = ">=3.10"
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  dependencies = [
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- 'sapiopylib>=2024.5.24.210', 'databind>=4.5'
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+ 'sapiopylib>=2023.12.13.174'
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  ]
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  classifiers = [
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  "Intended Audience :: Developers",