sapiopycommons 2024.11.11a364__tar.gz → 2024.11.18a366__tar.gz
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- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/.gitignore +2 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/PKG-INFO +5 -2
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/README.md +1 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/pyproject.toml +2 -2
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/callbacks/callback_util.py +532 -83
- sapiopycommons-2024.11.18a366/src/sapiopycommons/callbacks/field_builder.py +537 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/chem/IndigoMolecules.py +2 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/chem/Molecules.py +77 -18
- sapiopycommons-2024.11.18a366/src/sapiopycommons/customreport/column_builder.py +60 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/customreport/custom_report_builder.py +130 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/customreport/term_builder.py +299 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/datatype/attachment_util.py +11 -10
- sapiopycommons-2024.11.18a366/src/sapiopycommons/datatype/data_fields.py +61 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/datatype/pseudo_data_types.py +440 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/eln/experiment_handler.py +272 -70
- sapiopycommons-2024.11.18a366/src/sapiopycommons/eln/experiment_report_util.py +653 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/files/complex_data_loader.py +5 -4
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/files/file_bridge.py +31 -24
- sapiopycommons-2024.11.18a366/src/sapiopycommons/files/file_bridge_handler.py +340 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/files/file_data_handler.py +2 -5
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/files/file_util.py +59 -9
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/files/file_validator.py +92 -6
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/files/file_writer.py +44 -15
- sapiopycommons-2024.11.18a366/src/sapiopycommons/flowcyto/flow_cyto.py +77 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/flowcyto/flowcyto_data.py +75 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/general/accession_service.py +375 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/general/aliases.py +283 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/general/audit_log.py +189 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/general/custom_report_util.py +265 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/general/exceptions.py +21 -8
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/general/popup_util.py +21 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/general/sapio_links.py +50 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/general/time_util.py +8 -2
- sapiopycommons-2024.11.18a366/src/sapiopycommons/multimodal/multimodal.py +146 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/multimodal/multimodal_data.py +490 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/processtracking/custom_workflow_handler.py +406 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/processtracking/endpoints.py +22 -22
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/recordmodel/record_handler.py +481 -97
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/rules/eln_rule_handler.py +34 -25
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/rules/on_save_rule_handler.py +34 -31
- sapiopycommons-2024.11.18a366/src/sapiopycommons/sftpconnect/__init__.py +0 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/sftpconnect/sftp_builder.py +69 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/webhook/__init__.py +0 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/webhook/webhook_context.py +39 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/webhook/webhook_handlers.py +398 -0
- sapiopycommons-2024.11.18a366/src/sapiopycommons/webhook/webservice_handlers.py +67 -0
- sapiopycommons-2024.11.18a366/tests/AF-A0A009IHW8-F1-model_v4.cif +3455 -0
- sapiopycommons-2024.11.18a366/tests/_do_not_add_init_py_here +0 -0
- sapiopycommons-2024.11.18a366/tests/accession_test.py +41 -0
- sapiopycommons-2024.11.18a366/tests/bio_reg_test.py +33 -0
- sapiopycommons-2024.11.18a366/tests/chem_test.py +229 -0
- sapiopycommons-2024.11.18a366/tests/chem_test_curation_queue.py +31 -0
- sapiopycommons-2024.11.18a366/tests/curation_queue_test.sdf +168 -0
- sapiopycommons-2024.11.18a366/tests/data_type_models.py +58006 -0
- sapiopycommons-2024.11.18a366/tests/flowcyto/101_DEN084Y5_15_E01_008_clean.fcs +0 -0
- sapiopycommons-2024.11.18a366/tests/flowcyto/101_DEN084Y5_15_E03_009_clean.fcs +0 -0
- sapiopycommons-2024.11.18a366/tests/flowcyto/101_DEN084Y5_15_E05_010_clean.fcs +0 -0
- sapiopycommons-2024.11.18a366/tests/flowcyto/8_color_ICS.wsp +4833 -0
- sapiopycommons-2024.11.18a366/tests/flowcyto/COVID19_W_001_O.fcs +0 -0
- sapiopycommons-2024.11.18a366/tests/flowcyto_test.py +71 -0
- sapiopycommons-2024.11.18a366/tests/kappa.chains.fasta +45 -0
- sapiopycommons-2024.11.18a366/tests/mafft_test.py +66 -0
- sapiopycommons-2024.11.18a366/tests/test.gb +124 -0
- sapiopycommons-2024.11.11a364/src/sapiopycommons/general/aliases.py +0 -82
- sapiopycommons-2024.11.11a364/src/sapiopycommons/general/custom_report_util.py +0 -90
- sapiopycommons-2024.11.11a364/src/sapiopycommons/webhook/webhook_handlers.py +0 -239
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/LICENSE +0 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/callbacks/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/chem/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/datatype → sapiopycommons-2024.11.18a366/src/sapiopycommons/customreport}/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/eln → sapiopycommons-2024.11.18a366/src/sapiopycommons/datatype}/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/files → sapiopycommons-2024.11.18a366/src/sapiopycommons/eln}/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/eln/plate_designer.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/general → sapiopycommons-2024.11.18a366/src/sapiopycommons/files}/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/processtracking → sapiopycommons-2024.11.18a366/src/sapiopycommons/general}/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364 → sapiopycommons-2024.11.18a366}/src/sapiopycommons/general/storage_util.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/recordmodel → sapiopycommons-2024.11.18a366/src/sapiopycommons/processtracking}/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/rules → sapiopycommons-2024.11.18a366/src/sapiopycommons/recordmodel}/__init__.py +0 -0
- {sapiopycommons-2024.11.11a364/src/sapiopycommons/webhook → sapiopycommons-2024.11.18a366/src/sapiopycommons/rules}/__init__.py +0 -0
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Metadata-Version: 2.3
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Name: sapiopycommons
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Version: 2024.11.
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Version: 2024.11.18a366
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Summary: Official Sapio Python API Utilities Package
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Project-URL: Homepage, https://github.com/sapiosciences
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Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
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License: MPL-2.0
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Keywords: eln,lims,rest,sapio
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Classifier: Development Status :: 5 - Production/Stable
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Classifier: Intended Audience :: Developers
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Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Classifier: Topic :: Software Development :: Libraries :: Python Modules
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Requires-Python: >=3.10
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Requires-Dist:
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Requires-Dist: databind>=4.5
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Requires-Dist: sapiopylib>=2024.5.24.210
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Description-Content-Type: text/markdown
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## Dependencies
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The following dependencies are required for this package:
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- [sapiopylib - The official Sapio Informatics Platform Python API package.](https://pypi.org/project/sapiopylib/)
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- [databind - Databind is a library inspired by jackson-databind to de-/serialize Python dataclasses.](https://pypi.org/project/databind/)
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## Getting Help
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If you have a support contract with Sapio Sciences, please use our [technical support channels](https://sapio-sciences.atlassian.net/servicedesk/customer/portals).
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## Dependencies
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The following dependencies are required for this package:
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- [sapiopylib - The official Sapio Informatics Platform Python API package.](https://pypi.org/project/sapiopylib/)
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- [databind - Databind is a library inspired by jackson-databind to de-/serialize Python dataclasses.](https://pypi.org/project/databind/)
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## Getting Help
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If you have a support contract with Sapio Sciences, please use our [technical support channels](https://sapio-sciences.atlassian.net/servicedesk/customer/portals).
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[project]
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name = "sapiopycommons"
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version='2024.11.
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version='2024.11.18a366'
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authors = [
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{ name="Jonathan Steck", email="jsteck@sapiosciences.com" },
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{ name="Yechen Qiao", email="yqiao@sapiosciences.com" },
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readme = "README.md"
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requires-python = ">=3.10"
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dependencies = [
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'sapiopylib>=
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'sapiopylib>=2024.5.24.210', 'databind>=4.5'
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]
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classifiers = [
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"Intended Audience :: Developers",
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