sapiopycommons 2024.11.10a363__tar.gz → 2024.11.12a365__tar.gz

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  1. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/.gitignore +2 -0
  2. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/PKG-INFO +4 -2
  3. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/README.md +1 -0
  4. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/pyproject.toml +2 -2
  5. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/callbacks/callback_util.py +532 -83
  6. sapiopycommons-2024.11.12a365/src/sapiopycommons/callbacks/field_builder.py +537 -0
  7. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/chem/IndigoMolecules.py +1 -0
  8. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/chem/Molecules.py +1 -0
  9. sapiopycommons-2024.11.12a365/src/sapiopycommons/customreport/column_builder.py +60 -0
  10. sapiopycommons-2024.11.12a365/src/sapiopycommons/customreport/custom_report_builder.py +130 -0
  11. sapiopycommons-2024.11.12a365/src/sapiopycommons/customreport/term_builder.py +299 -0
  12. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/datatype/attachment_util.py +11 -10
  13. sapiopycommons-2024.11.12a365/src/sapiopycommons/datatype/data_fields.py +61 -0
  14. sapiopycommons-2024.11.12a365/src/sapiopycommons/datatype/pseudo_data_types.py +440 -0
  15. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/eln/experiment_handler.py +272 -70
  16. sapiopycommons-2024.11.12a365/src/sapiopycommons/eln/experiment_report_util.py +653 -0
  17. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/files/complex_data_loader.py +5 -4
  18. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/files/file_bridge.py +31 -24
  19. sapiopycommons-2024.11.12a365/src/sapiopycommons/files/file_bridge_handler.py +340 -0
  20. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/files/file_data_handler.py +2 -5
  21. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/files/file_util.py +59 -9
  22. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/files/file_validator.py +92 -6
  23. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/files/file_writer.py +44 -15
  24. sapiopycommons-2024.11.12a365/src/sapiopycommons/general/accession_service.py +375 -0
  25. sapiopycommons-2024.11.12a365/src/sapiopycommons/general/aliases.py +283 -0
  26. sapiopycommons-2024.11.12a365/src/sapiopycommons/general/audit_log.py +189 -0
  27. sapiopycommons-2024.11.12a365/src/sapiopycommons/general/custom_report_util.py +265 -0
  28. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/general/exceptions.py +21 -8
  29. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/general/popup_util.py +21 -0
  30. sapiopycommons-2024.11.12a365/src/sapiopycommons/general/sapio_links.py +50 -0
  31. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/general/time_util.py +8 -2
  32. sapiopycommons-2024.11.12a365/src/sapiopycommons/multimodal/multimodal.py +146 -0
  33. sapiopycommons-2024.11.12a365/src/sapiopycommons/multimodal/multimodal_data.py +486 -0
  34. sapiopycommons-2024.11.12a365/src/sapiopycommons/processtracking/custom_workflow_handler.py +406 -0
  35. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/processtracking/endpoints.py +22 -22
  36. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/recordmodel/record_handler.py +481 -97
  37. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/rules/eln_rule_handler.py +34 -25
  38. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/rules/on_save_rule_handler.py +34 -31
  39. sapiopycommons-2024.11.12a365/src/sapiopycommons/sftpconnect/__init__.py +0 -0
  40. sapiopycommons-2024.11.12a365/src/sapiopycommons/sftpconnect/sftp_builder.py +69 -0
  41. sapiopycommons-2024.11.12a365/src/sapiopycommons/webhook/__init__.py +0 -0
  42. sapiopycommons-2024.11.12a365/src/sapiopycommons/webhook/webhook_context.py +39 -0
  43. sapiopycommons-2024.11.12a365/src/sapiopycommons/webhook/webhook_handlers.py +398 -0
  44. sapiopycommons-2024.11.12a365/src/sapiopycommons/webhook/webservice_handlers.py +67 -0
  45. sapiopycommons-2024.11.12a365/tests/_do_not_add_init_py_here +0 -0
  46. sapiopycommons-2024.11.12a365/tests/accession_test.py +41 -0
  47. sapiopycommons-2024.11.12a365/tests/bio_reg_test.py +26 -0
  48. sapiopycommons-2024.11.12a365/tests/chem_test.py +229 -0
  49. sapiopycommons-2024.11.12a365/tests/data_type_models.py +37332 -0
  50. sapiopycommons-2024.11.12a365/tests/kappa.chains.fasta +45 -0
  51. sapiopycommons-2024.11.12a365/tests/mafft_test.py +66 -0
  52. sapiopycommons-2024.11.12a365/tests/test.gb +124 -0
  53. sapiopycommons-2024.11.10a363/src/sapiopycommons/general/aliases.py +0 -82
  54. sapiopycommons-2024.11.10a363/src/sapiopycommons/general/custom_report_util.py +0 -90
  55. sapiopycommons-2024.11.10a363/src/sapiopycommons/webhook/webhook_handlers.py +0 -239
  56. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/LICENSE +0 -0
  57. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/__init__.py +0 -0
  58. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/callbacks/__init__.py +0 -0
  59. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/chem/__init__.py +0 -0
  60. {sapiopycommons-2024.11.10a363/src/sapiopycommons/datatype → sapiopycommons-2024.11.12a365/src/sapiopycommons/customreport}/__init__.py +0 -0
  61. {sapiopycommons-2024.11.10a363/src/sapiopycommons/eln → sapiopycommons-2024.11.12a365/src/sapiopycommons/datatype}/__init__.py +0 -0
  62. {sapiopycommons-2024.11.10a363/src/sapiopycommons/files → sapiopycommons-2024.11.12a365/src/sapiopycommons/eln}/__init__.py +0 -0
  63. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/eln/plate_designer.py +0 -0
  64. {sapiopycommons-2024.11.10a363/src/sapiopycommons/general → sapiopycommons-2024.11.12a365/src/sapiopycommons/files}/__init__.py +0 -0
  65. {sapiopycommons-2024.11.10a363/src/sapiopycommons/processtracking → sapiopycommons-2024.11.12a365/src/sapiopycommons/general}/__init__.py +0 -0
  66. {sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/src/sapiopycommons/general/storage_util.py +0 -0
  67. {sapiopycommons-2024.11.10a363/src/sapiopycommons/recordmodel → sapiopycommons-2024.11.12a365/src/sapiopycommons/processtracking}/__init__.py +0 -0
  68. {sapiopycommons-2024.11.10a363/src/sapiopycommons/rules → sapiopycommons-2024.11.12a365/src/sapiopycommons/recordmodel}/__init__.py +0 -0
  69. {sapiopycommons-2024.11.10a363/src/sapiopycommons/webhook → sapiopycommons-2024.11.12a365/src/sapiopycommons/rules}/__init__.py +0 -0
{sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/.gitignore RENAMED
@@ -6,3 +6,5 @@
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  **/*.versionsBackup
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  **/target
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  /sapiopycommons/sapiopycommons.egg-info/
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+ /sapiopycommons/dist**
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+ /.pydevproject
{sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/PKG-INFO RENAMED
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  Metadata-Version: 2.3
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  Name: sapiopycommons
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- Version: 2024.11.10a363
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+ Version: 2024.11.12a365
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  Summary: Official Sapio Python API Utilities Package
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  Project-URL: Homepage, https://github.com/sapiosciences
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  Author-email: Jonathan Steck <jsteck@sapiosciences.com>, Yechen Qiao <yqiao@sapiosciences.com>
@@ -15,7 +15,8 @@ Classifier: Programming Language :: Python :: 3.10
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  Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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  Classifier: Topic :: Software Development :: Libraries :: Python Modules
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  Requires-Python: >=3.10
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- Requires-Dist: sapiopylib>=2023.12.13.174
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+ Requires-Dist: databind>=4.5
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+ Requires-Dist: sapiopylib>=2024.5.24.210
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  Description-Content-Type: text/markdown
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@@ -48,6 +49,7 @@ This license does not provide any rights to use any other copyrighted artifacts
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  ## Dependencies
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  The following dependencies are required for this package:
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  - [sapiopylib - The official Sapio Informatics Platform Python API package.](https://pypi.org/project/sapiopylib/)
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+ - [databind - Databind is a library inspired by jackson-databind to de-/serialize Python dataclasses.](https://pypi.org/project/databind/)
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  ## Getting Help
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  If you have a support contract with Sapio Sciences, please use our [technical support channels](https://sapio-sciences.atlassian.net/servicedesk/customer/portals).
{sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/README.md RENAMED
@@ -28,6 +28,7 @@ This license does not provide any rights to use any other copyrighted artifacts
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  ## Dependencies
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  The following dependencies are required for this package:
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  - [sapiopylib - The official Sapio Informatics Platform Python API package.](https://pypi.org/project/sapiopylib/)
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+ - [databind - Databind is a library inspired by jackson-databind to de-/serialize Python dataclasses.](https://pypi.org/project/databind/)
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  ## Getting Help
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  If you have a support contract with Sapio Sciences, please use our [technical support channels](https://sapio-sciences.atlassian.net/servicedesk/customer/portals).
{sapiopycommons-2024.11.10a363 → sapiopycommons-2024.11.12a365}/pyproject.toml RENAMED
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  [project]
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  name = "sapiopycommons"
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- version='2024.11.10a363'
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+ version='2024.11.12a365'
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  authors = [
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  { name="Jonathan Steck", email="jsteck@sapiosciences.com" },
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  { name="Yechen Qiao", email="yqiao@sapiosciences.com" },
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  readme = "README.md"
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  requires-python = ">=3.10"
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  dependencies = [
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- 'sapiopylib>=2023.12.13.174'
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+ 'sapiopylib>=2024.5.24.210', 'databind>=4.5'
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  ]
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  classifiers = [
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  "Intended Audience :: Developers",