samplesheet-parser 0.3.2__tar.gz → 0.3.3__tar.gz

{samplesheet_parser-0.3.2 → samplesheet_parser-0.3.3}/.github/workflows/ci.yml

@@ -67,3 +67,18 @@ jobs:
         uses: pypa/gh-action-pypi-publish@release/v1
         with:
           password: ${{ secrets.PYPI_API_TOKEN }}
+
+  release:
+    needs: publish
+    runs-on: ubuntu-latest
+    if: startsWith(github.ref, 'refs/tags/v')
+    permissions:
+      contents: write
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Create GitHub Release
+        uses: softprops/action-gh-release@v2
+        with:
+          generate_release_notes: true

{samplesheet_parser-0.3.2 → samplesheet_parser-0.3.3}/CHANGELOG.md

@@ -6,6 +6,13 @@ The format follows [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).
 
 ---
 
+## [0.3.3] - 2026-03-13
+
+### Documentation
+- Add architecture diagram showing full library structure including CLI and SampleSheetMerger
+- Update README with architecture overview, solid vs dashed line legend
+- Add `[Custom_Sections*]` to V1 and V2 format descriptions
+
 ## [0.3.2] - 2026-03-12
 
 ### Added

{samplesheet_parser-0.3.2 → samplesheet_parser-0.3.3}/CITATION.cff

@@ -1,23 +1,33 @@
 cff-version: 1.2.0
-message: "If you use this software, please cite it as below."
+message: "If you use this software, please cite it using the metadata below."
 type: software
 title: "samplesheet-parser"
+abstract: >
+  A Python library for parsing, validating, converting, and merging
+  Illumina SampleSheet V1 and V2 files for BCLConvert and bcl2fastq.
+  Provides format auto-detection, bidirectional V1/V2 conversion,
+  structural and index validation, sheet diffing, and cross-project
+  merging with Hamming-distance collision detection.
 version: 0.3.2
 date-released: 2026-03-12
 license: Apache-2.0
 url: "https://github.com/chaitanyakasaraneni/samplesheet-parser"
 repository-code: "https://github.com/chaitanyakasaraneni/samplesheet-parser"
-abstract: >
-  A Python library for parsing, validating, converting, and merging
-  Illumina SampleSheet V1 and V2 files for BCLConvert and bcl2fastq.
+repository-artifact: "https://pypi.org/project/samplesheet-parser/"
 keywords:
   - bioinformatics
   - Illumina
   - SampleSheet
   - BCLConvert
+  - bcl2fastq
   - demultiplexing
   - genomics
+  - sequencing
   - Python
+identifiers:
+  - type: doi
+    value: 10.5281/zenodo.18989694
+    description: Concept DOI (all versions)
 authors:
   - family-names: Kasaraneni
     given-names: Chaitanya Krishna

{samplesheet_parser-0.3.2 → samplesheet_parser-0.3.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: samplesheet-parser
-Version: 0.3.2
+Version: 0.3.3
 Summary: Format-agnostic parser for Illumina SampleSheet.csv files — supports IEM V1 and BCLConvert V2
 Project-URL: Homepage, https://github.com/chaitanyakasaraneni/samplesheet-parser
 Project-URL: Documentation, https://illumina-samplesheet.readthedocs.io
@@ -60,8 +60,9 @@ Supports both the classic IEM V1 format (bcl2fastq era) and the modern BCLConver
 [![License: Apache 2.0](https://img.shields.io/badge/License-Apache_2.0-yellow.svg)](https://opensource.org/licenses/Apache-2.0)
 [![Tests](https://github.com/chaitanyakasaraneni/samplesheet-parser/actions/workflows/ci.yml/badge.svg)](https://github.com/chaitanyakasaraneni/samplesheet-parser/actions)
 [![codecov](https://codecov.io/gh/chaitanyakasaraneni/samplesheet-parser/branch/main/graph/badge.svg?token=CODECOV_TOKEN)](https://codecov.io/gh/chaitanyakasaraneni/samplesheet-parser)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18989694.svg)](https://doi.org/10.5281/zenodo.18989694)
 
-![samplesheet-parser overview](https://raw.githubusercontent.com/chaitanyakasaraneni/samplesheet-parser/main/images/samplesheet_parser_overview.png)
+![samplesheet-parser overview](https://raw.githubusercontent.com/chaitanyakasaraneni/samplesheet-parser/main/images/samplesheet_parser_arch_v03.png)
 
 *`SampleSheetFactory` auto-detects the format and routes to the correct parser. Both formats share a common interface — `SampleSheetConverter` handles bidirectional conversion, `SampleSheetValidator` catches index and adapter issues, `SampleSheetDiff` compares two sheets across any combination of V1/V2 formats, `SampleSheetMerger` combines multiple per-project sheets into one, and `SampleSheetWriter` builds or edits sheets programmatically. The `samplesheet` CLI exposes all of this from the shell.*
 
@@ -584,7 +585,7 @@ See [CONTRIBUTING.md](CONTRIBUTING.md) for the full local testing guide and PR c
   title   = {samplesheet-parser: Format-agnostic parser for Illumina SampleSheet.csv},
   year    = {2026},
   url     = {https://github.com/chaitanyakasaraneni/samplesheet-parser},
-  version = {0.3.2}
+  version = {0.3.3}
 }
 ```
 

{samplesheet_parser-0.3.2 → samplesheet_parser-0.3.3}/README.md

@@ -9,8 +9,9 @@ Supports both the classic IEM V1 format (bcl2fastq era) and the modern BCLConver
 [![License: Apache 2.0](https://img.shields.io/badge/License-Apache_2.0-yellow.svg)](https://opensource.org/licenses/Apache-2.0)
 [![Tests](https://github.com/chaitanyakasaraneni/samplesheet-parser/actions/workflows/ci.yml/badge.svg)](https://github.com/chaitanyakasaraneni/samplesheet-parser/actions)
 [![codecov](https://codecov.io/gh/chaitanyakasaraneni/samplesheet-parser/branch/main/graph/badge.svg?token=CODECOV_TOKEN)](https://codecov.io/gh/chaitanyakasaraneni/samplesheet-parser)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18989694.svg)](https://doi.org/10.5281/zenodo.18989694)
 
-![samplesheet-parser overview](https://raw.githubusercontent.com/chaitanyakasaraneni/samplesheet-parser/main/images/samplesheet_parser_overview.png)
+![samplesheet-parser overview](https://raw.githubusercontent.com/chaitanyakasaraneni/samplesheet-parser/main/images/samplesheet_parser_arch_v03.png)
 
 *`SampleSheetFactory` auto-detects the format and routes to the correct parser. Both formats share a common interface — `SampleSheetConverter` handles bidirectional conversion, `SampleSheetValidator` catches index and adapter issues, `SampleSheetDiff` compares two sheets across any combination of V1/V2 formats, `SampleSheetMerger` combines multiple per-project sheets into one, and `SampleSheetWriter` builds or edits sheets programmatically. The `samplesheet` CLI exposes all of this from the shell.*
 
@@ -533,7 +534,7 @@ See [CONTRIBUTING.md](CONTRIBUTING.md) for the full local testing guide and PR c
   title   = {samplesheet-parser: Format-agnostic parser for Illumina SampleSheet.csv},
   year    = {2026},
   url     = {https://github.com/chaitanyakasaraneni/samplesheet-parser},
-  version = {0.3.2}
+  version = {0.3.3}
 }
 ```
 

{samplesheet_parser-0.3.2 → samplesheet_parser-0.3.3}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "samplesheet-parser"
-version = "0.3.2"
+version = "0.3.3"
 description = "Format-agnostic parser for Illumina SampleSheet.csv files — supports IEM V1 and BCLConvert V2"
 readme = "README.md"
 license = { file = "LICENSE" }