samplekit 0.1.0__tar.gz → 0.1.2__tar.gz

{samplekit-0.1.0/samplekit.egg-info → samplekit-0.1.2}/PKG-INFO

@@ -1,11 +1,11 @@
 Metadata-Version: 2.4
 Name: samplekit
-Version: 0.1.0
+Version: 0.1.2
 Summary: Lightweight Python framework for documenting scientific samples with bidirectional Markdown I/O
 Author-email: zelyph <github@zelyph.fr>
 License: MIT
-Project-URL: Homepage, https://github.com/zelyph/SampleKit
-Project-URL: Repository, https://github.com/zelyph/SampleKit
+Project-URL: Homepage, https://github.com/zelyph/SampleKit-dev
+Project-URL: Repository, https://github.com/zelyph/SampleKit-dev
 Keywords: science,measurement,markdown,yaml,sample,property
 Classifier: Development Status :: 3 - Alpha
 Classifier: Intended Audience :: Science/Research

{samplekit-0.1.0 → samplekit-0.1.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "samplekit"
-version = "0.1.0"
+version = "0.1.2"
 description = "Lightweight Python framework for documenting scientific samples with bidirectional Markdown I/O"
 authors = [{ name = "zelyph", email = "github@zelyph.fr" }]
 readme = "README.md"
@@ -28,5 +28,5 @@ build-backend = "setuptools.build_meta"
 include = ["samplekit*"]
 
 [project.urls]
-Homepage = "https://github.com/zelyph/SampleKit"
-Repository = "https://github.com/zelyph/SampleKit"
+Homepage = "https://github.com/zelyph/SampleKit-dev"
+Repository = "https://github.com/zelyph/SampleKit-dev"

{samplekit-0.1.0 → samplekit-0.1.2}/samplekit/__init__.py

@@ -7,7 +7,7 @@ from .sample_list import SampleList
 from . import report
 from . import converters
 
-__version__ = "0.1.0"
+__version__ = "0.1.2"
 
 __all__ = [
     "Property",

{samplekit-0.1.0 → samplekit-0.1.2}/samplekit/report.py

@@ -128,7 +128,7 @@ def properties_table(
             sym = prop.symbol or name
             sym_cell = sym
         val_cell = format_property(prop, style, unit=False)
-        unit_cell = f"${prop.unit_math.translate(_LATEX_SPECIAL)}$" if math and prop.unit else prop.unit
+        unit_cell = f"${prop.unit_math}$" if math and prop.unit else prop.unit
         rows.append([sym_cell, val_cell, unit_cell])
 
     return markdown_table(rows, headers, align or ["c"] * len(headers))

{samplekit-0.1.0 → samplekit-0.1.2}/samplekit/sample.py

@@ -97,6 +97,8 @@ class Sample:
         n = name if name is not None else (fp.stem if fp else "Unnamed")
         object.__setattr__(self, 'name', n)
         object.__setattr__(self, '_hydrating', False)
+        if type(self) is Sample:
+            self._auto_hydrate()
 
     def _auto_hydrate(self):
         """Load data from filepath if the file exists."""

{samplekit-0.1.0 → samplekit-0.1.2}/samplekit/table.py

@@ -354,10 +354,10 @@ class Table:
         if not prop.unit and col.unit:
             prop.unit = col.unit
             prop.unit_math = col.unit_math
+        if prop.precision_unc == prop.precision and col.precision_unc:
+            prop.precision_unc = col.precision_unc
         if not prop.precision and col.precision:
             prop.precision = col.precision
-        if prop.precision_unc == prop.precision and col.precision_unc != col.precision:
-            prop.precision_unc = col.precision_unc
         if prop.symbol is None and col.symbol:
             prop.symbol = col.symbol
         if prop.symbol_math is None and col.symbol_math:

{samplekit-0.1.0 → samplekit-0.1.2/samplekit.egg-info}/PKG-INFO

@@ -1,11 +1,11 @@
 Metadata-Version: 2.4
 Name: samplekit
-Version: 0.1.0
+Version: 0.1.2
 Summary: Lightweight Python framework for documenting scientific samples with bidirectional Markdown I/O
 Author-email: zelyph <github@zelyph.fr>
 License: MIT
-Project-URL: Homepage, https://github.com/zelyph/SampleKit
-Project-URL: Repository, https://github.com/zelyph/SampleKit
+Project-URL: Homepage, https://github.com/zelyph/SampleKit-dev
+Project-URL: Repository, https://github.com/zelyph/SampleKit-dev
 Keywords: science,measurement,markdown,yaml,sample,property
 Classifier: Development Status :: 3 - Alpha
 Classifier: Intended Audience :: Science/Research

{samplekit-0.1.0 → samplekit-0.1.2}/samplekit.egg-info/SOURCES.txt

@@ -12,5 +12,4 @@ samplekit.egg-info/PKG-INFO
 samplekit.egg-info/SOURCES.txt
 samplekit.egg-info/dependency_links.txt
 samplekit.egg-info/requires.txt
-samplekit.egg-info/top_level.txt
-tests/test_smoke.py
+samplekit.egg-info/top_level.txt

samplekit-0.1.0/tests/test_smoke.py

@@ -1,324 +0,0 @@
-"""Smoke tests for samplekit v2."""
-
-import tempfile
-import subprocess
-import sys
-from pathlib import Path
-
-from samplekit import Property, Table, Column, Sample, SampleList, report
-import samplekit
-from samplekit.report import format_property
-
-
-def test_imports():
-    print("=== 1. Import test ===")
-    print(f"  version: {samplekit.__version__}")
-    assert samplekit.__version__ == "2.0.0a1"
-    print("  all imports OK")
-
-
-def test_property():
-    print("\n=== 2. Property test ===")
-    # Static
-    p = Property(value=25.0, uncertainty=0.5, unit="°C", symbol_math="T")
-    print(f"  static: {p.text}")
-    assert p.value == 25.0
-    assert p.uncertainty == 0.5
-
-    # Measured (auto mean ± std)
-    p2 = Property(value=[101.1, 101.3, 101.5], unit="kPa", symbol_math="P")
-    print(f"  measured: {p2.text}")
-    assert abs(p2.value - 101.3) < 0.01
-    assert p2.uncertainty is not None
-
-    # String
-    p3 = Property(value="Alumina")
-    print(f"  string: {p3.text}")
-    assert p3.value == "Alumina"
-
-
-def test_computed_invalidation():
-    print("\n=== 3. Computed property with dependency invalidation ===")
-
-    class TestSample(Sample):
-        def __init__(self, name=None, filepath=None):
-            super().__init__(name, filepath)
-            self.a = Property(value=10.0)
-            self.b = Property(value=3.0)
-            self.ratio = Property(
-                compute=self._calc_ratio,
-                depends_on=[self.a, self.b],
-                precision=".4f",
-            )
-
-        def _calc_ratio(self):
-            return self.a.value / self.b.value
-
-    s = TestSample("test")
-    print(f"  ratio = {s.ratio.value:.4f}")
-    assert abs(s.ratio.value - 3.3333) < 0.001
-
-    s.a.value = 20.0
-    print(f"  after a=20: ratio = {s.ratio.value:.4f}")
-    assert abs(s.ratio.value - 6.6667) < 0.001
-    print("  invalidation OK")
-
-
-def test_table():
-    print("\n=== 4. Table test ===")
-    t = Table(
-        columns={
-            "T": Column(unit="°C"),
-            "f": Column(unit="GHz", precision=".6f"),
-            "Q": Column(precision=".0f"),
-        },
-    )
-    t.add(T=20, f=(8.878084, 9e-7), Q=24840)
-    t.add(T=30, f=8.873760, Q=24104)
-    print(f"  rows: {len(t)}, indices: {t.index_values}")
-    assert len(t) == 2
-    assert t(20).f.value == 8.878084
-    assert t(20).f.uncertainty == 9e-7
-    assert t(20).Q.value == 24840
-
-    # Column access
-    assert t.f.values == [8.878084, 8.873760]
-    assert t.f[20].value == 8.878084
-
-    # Cell formatting (via report.format_property)
-    assert "$" in format_property(t(20).f, style="math", unit=False)
-
-    print("  Table OK")
-
-
-class MySample(Sample):
-    def __init__(self, name=None, filepath=None):
-        super().__init__(name, filepath)
-        self.material = Property(unit="-")
-        self.height = Property(unit="mm", symbol_math="h", precision=".3f")
-        self.diameter = Property(unit="mm", symbol_math="d", precision=".3f")
-        self.rho = Property(
-            unit="g/cm³", precision=".4f",
-            compute=self._calc_rho,
-            depends_on=[self.height, self.diameter],
-        )
-        self.measurements = Table(
-            columns={
-                "T": Column(unit="°C"),
-                "f": Column(unit="GHz", precision=".6f", precision_unc=".2e"),
-                "Q": Column(precision=".0f"),
-            },
-        )
-
-    def _calc_rho(self):
-        return 3.95
-
-    def template(self, style="math"):
-        s = []
-        s.append(report.heading("Properties"))
-        s.append(report.properties_table(
-            self, ["material", "height", "diameter", "rho"], style=style,
-        ))
-        if self.measurements:
-            s.append(report.heading("Measurements"))
-            s.append(report.table_to_markdown(self.measurements, style=style))
-        return "\n\n".join(s)
-
-
-def test_roundtrip():
-    print("\n=== 5. Write / Read round-trip ===")
-    s = MySample("roundtrip_test")
-    s.material.value = "Alumina"
-    s.height.value = [6.012, 6.009, 6.015]
-    s.height.uncertainty = 0.017
-    s.diameter.value = 25.127
-    s.measurements.add(T=20, f=(8.878084, 9e-7), Q=24840)
-    s.measurements.add(T=30, f=8.873760, Q=24104)
-
-    with tempfile.TemporaryDirectory() as tmpdir:
-        fp = Path(tmpdir) / "test.md"
-        s.save(fp)
-        content = fp.read_text()
-        print(f"  Written OK, file size: {len(content)} bytes")
-
-        assert "name: roundtrip_test" in content
-        assert "Alumina" in content
-        assert "8.878084" in content
-        assert "!!float" not in content
-        print("  YAML format OK (no !!float)")
-
-        loaded = MySample.load(fp)
-        print(f"  Loaded name: {loaded.name}")
-        print(f"  Loaded height: {loaded.height.value} +/- {loaded.height.uncertainty}")
-        print(f"  Loaded material: {loaded.material.value}")
-        print(f"  Loaded rho (computed, seeded): {loaded.rho.value}")
-        print(f"  Loaded measurements: {len(loaded.measurements)} rows")
-        print(f"  Loaded f@20: {loaded.measurements(20).f.value}")
-
-        assert loaded.name == "roundtrip_test"
-        assert loaded.material.value == "Alumina"
-        assert abs(loaded.height.value - 6.012) < 0.001
-        assert loaded.height.uncertainty == 0.017
-        assert loaded.measurements(20).f.value == 8.878084
-        assert loaded.measurements(20).f.uncertainty == 9e-7
-        assert loaded.measurements(30).Q.value == 24104
-        print("  Round-trip assertions PASSED")
-
-
-def test_report():
-    print("\n=== 6. Report rendering ===")
-    s = MySample("report_test")
-    s.material.value = "Alumina"
-    s.height.value = 6.012
-    s.height.uncertainty = 0.017
-    s.diameter.value = 25.127
-    s.measurements.add(T=20, f=8.878084, Q=24840)
-
-    md = s.template(style="math")
-    assert "| $h$" in md
-    assert "\\pm" in md
-    assert "Measurements" in md
-    print("  Markdown template OK")
-
-    txt = s.template(style="text")
-    assert "±" in txt
-    print("  Text template OK")
-
-
-def test_samplelist():
-    print("\n=== 7. SampleList ===")
-    with tempfile.TemporaryDirectory() as tmpdir:
-        for i in range(3):
-            si = MySample(f"sample_{i}")
-            si.material.value = f"Material_{i}"
-            si.height.value = 5.0 + i * 0.5
-            si.diameter.value = 25.0
-            si.save(Path(tmpdir) / f"sample_{i}.md")
-
-        sl = SampleList(tmpdir, sample_class=MySample)
-        print(f"  Loaded {len(sl)} samples from directory")
-        assert len(sl) == 3
-
-        filtered = sl.filter(lambda s: s.height.value > 5.2)
-        print(f"  Filtered to {len(filtered)} samples (height > 5.2)")
-        assert len(filtered) == 2
-
-        sorted_sl = sl.sort("height", reverse=True)
-        print(f"  Sorted: {[s.name for s in sorted_sl]}")
-        assert sorted_sl[0].name == "sample_2"
-
-        s0 = sl["sample_0"]
-        assert s0.material.value == "Material_0"
-        print("  Access by name OK")
-        print("  SampleList assertions PASSED")
-
-
-def test_table_column_compute():
-    """Table with column-wise compute."""
-    print("\n=== 8. Table column-wise compute ===")
-
-    def make_f(Ts):
-        return [8.878 - 0.001 * (T - 20) for T in Ts]
-
-    def make_q(Ts):
-        return [25000 - 10 * (T - 20) for T in Ts]
-
-    t = Table(
-        columns={
-            "T": Column(unit="°C"),
-            "f": Column(unit="GHz", precision=".6f"),
-            "Q": Column(precision=".0f"),
-        },
-        compute={"f": make_f, "Q": make_q},
-        index=[20, 30, 40],
-    )
-    assert len(t) == 3
-    assert t.index_values == [20, 30, 40]
-    assert t(20).f.value == 8.878
-    assert t(30).f.value == 8.868
-    assert t(40).Q.value == 24800
-    # Column access
-    assert t.f.values == [8.878, 8.868, 8.858]
-    print(f"  column-wise compute OK: {t.f.values}")
-
-
-def test_table_compute_with_unc():
-    """Table with column-wise compute + uncertainty."""
-    print("\n=== 9. Table compute with uncertainty ===")
-
-    TC = Column(precision=".2f")
-
-    def make_f(Ts):
-        return [8.878 - 0.001 * (T - 20) for T in Ts]
-
-    def make_f_unc(Ts):
-        return [1e-6 * T for T in Ts]
-
-    def make_tau(Ts):
-        return [-5.0 + 0.1 * T for T in Ts]
-
-    t = Table(
-        columns={
-            "T": Column(unit="°C"),
-            "f": Column(unit="GHz", precision=".6f"),
-            "tau_lin": TC, "tau_poly": TC,
-        },
-        compute={"f": make_f, "tau_lin": make_tau, "tau_poly": make_tau},
-        compute_unc={"f": make_f_unc},
-        index=[20, 30],
-    )
-    assert len(t) == 2
-    assert t(20).f.value == 8.878
-    assert abs(t(20).f.uncertainty - 20e-6) < 1e-12
-    assert t(30).f.value == 8.868
-    assert abs(t(30).f.uncertainty - 30e-6) < 1e-12
-    # Shared Column: both tau columns have same metadata
-    assert t(20).tau_lin.value == -3.0
-    assert t(20).tau_poly.value == -3.0
-    print(f"  compute+unc OK: f={t.f.values}, tau_lin={t.tau_lin.values}")
-
-
-def test_table_data_dict():
-    """Table with data=dict (static values)."""
-    print("\n=== 10. Table data=dict (static) ===")
-    t = Table(
-        columns={
-            "T": Column(unit="°C"),
-            "f": Column(unit="GHz", precision=".6f"),
-            "Q": Column(precision=".0f"),
-        },
-        data={
-            20: {"f": (8.878, 9e-7), "Q": 24840},
-            30: {"f": 8.874, "Q": 24104},
-        },
-    )
-    assert len(t) == 2
-    assert t(20).f.value == 8.878
-    assert t(20).f.uncertainty == 9e-7
-    assert t(30).Q.value == 24104
-    print(f"  static rows OK: f@20={t(20).f.value}, Q@30={t(30).Q.value}")
-
-
-def test_example():
-    print("\n=== 10. Example ===")
-    result = subprocess.run(
-        [sys.executable, "examples/basic_sample.py"],
-        capture_output=True, text=True,
-    )
-    assert result.returncode == 0, f"Example failed:\n{result.stderr}"
-    print("  basic_sample.py runs OK")
-
-
-if __name__ == "__main__":
-    test_imports()
-    test_property()
-    test_computed_invalidation()
-    test_table()
-    test_table_column_compute()
-    test_table_compute_with_unc()
-    test_table_data_dict()
-    test_roundtrip()
-    test_report()
-    test_samplelist()
-    test_example()
-    print("\n\nALL TESTS PASSED ✓")