saiunit 0.0.17__tar.gz

saiunit-0.0.17/LICENSE

@@ -0,0 +1,202 @@
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saiunit-0.0.17/PKG-INFO

@@ -0,0 +1,196 @@
+Metadata-Version: 2.4
+Name: saiunit
+Version: 0.0.17
+Summary: Enabling Unit-aware Computations for AI-driven Scientific Computing.
+Author-email: SAIUnit Developers <chao.brain@qq.com>
+License-Expression: Apache-2.0
+Project-URL: homepage, https://github.com/chaobrain/saiunit
+Project-URL: repository, https://github.com/chaobrain/saiunit
+Project-URL: Bug Tracker, https://github.com/chaobrain/saiunit/issues
+Project-URL: Documentation, https://saiunit.readthedocs.io/
+Keywords: physical unit,physical quantity,brain modeling,scientific computing,AI for science
+Classifier: Natural Language :: English
+Classifier: Operating System :: OS Independent
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: Topic :: Software Development :: Libraries
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: jax
+Requires-Dist: jaxlib
+Requires-Dist: numpy
+Requires-Dist: typing_extensions
+Provides-Extra: testing
+Requires-Dist: pytest; extra == "testing"
+Provides-Extra: cpu
+Requires-Dist: jax[cpu]; extra == "cpu"
+Provides-Extra: cuda12
+Requires-Dist: jax[cuda12]; extra == "cuda12"
+Provides-Extra: tpu
+Requires-Dist: jax[tpu]; extra == "tpu"
+Dynamic: license-file
+
+<p align="center">
+  	<img alt="Header image of SAIUnit." src="https://raw.githubusercontent.com/chaobrain/saiunit/main/docs/_static/logo.png" width=80%>
+</p> 
+
+
+
+<p align="center">
+	<a href="https://pypi.org/project/saiunit/"><img alt="Supported Python Version" src="https://img.shields.io/pypi/pyversions/saiunit"></a>
+	<a href="https://github.com/chaobrain/saiunit/blob/main/LICENSE"><img alt="LICENSE" src="https://img.shields.io/badge/License-Apache%202.0-blue.svg"></a>
+    <a href='https://saiunit.readthedocs.io/?badge=latest'>
+        <img src='https://readthedocs.org/projects/saiunit/badge/?version=latest' alt='Documentation Status' />
+    </a>  	
+    <a href="https://badge.fury.io/py/saiunit"><img alt="PyPI version" src="https://badge.fury.io/py/saiunit.svg"></a>
+    <a href="https://github.com/chaobrain/saiunit/actions/workflows/CI.yml"><img alt="Continuous Integration" src="https://github.com/chaobrain/saiunit/actions/workflows/CI.yml/badge.svg"></a>
+    <a href="https://pepy.tech/projects/saiunit"><img src="https://static.pepy.tech/badge/saiunit" alt="PyPI Downloads"></a>
+</p>
+
+
+## Motivation
+
+[SAIUnit](https://github.com/chaobrain/saiunit) (/saɪ ˈjuːnɪt/) is designed to provide physical units and unit-aware mathematical systems tailored for **S**cientific **AI** within JAX. In this context, Scientific AI refers to the use of AI models or tools to advance scientific computations. SAIUnit evolves from our [BrainUnit](https://github.com/chaobrain/brainunit), a unit framework originally developed for brain dynamics modeling, extending its capabilities to support a broader range of scientific computing applications. SAIUnit is committed to providing rigorous and automatic physical unit conversion and analysis system for general AI-driven scientific computing. 
+
+
+
+## Features
+
+Compared to existing unit libraries, such as [Quantities](https://github.com/python-quantities/python-quantities) and [Pint](https://github.com/hgrecco/pint), SAIUnit introduces a rigorous physical unit system specifically designed to support AI computations (e.g., automatic differentiation, just-in-time compilation, and parallelization). Its unique advantages include:
+
+- Integration of over 2,000 commonly used physical units and constants
+- Implementation of more than 500 unit-aware mathematical functions
+- Deep integration with JAX, providing comprehensive support for modern AI framework features including automatic differentiation (autograd), just-in-time compilation (JIT), vectorization, and parallel computation
+- Unit conversion and analysis are performed at compilation time, resulting in zero runtime overhead
+- Strict physical unit type checking and dimensional inference system, detecting unit inconsistencies during compilation
+
+
+```mermaid
+graph TD
+    A[SAIUnit] --> B[Physical Units]
+    A --> C[Mathematical Functions]
+    A --> D[JAX Integration]
+    B --> B1[2000+ Units]
+    B --> B2[Physical Constants]
+    C --> C1[500+ Unit-aware Functions]
+    D --> D1[Autograd]
+    D --> D2[JIT Compilation]
+    D --> D3[Vectorization]
+    D --> D4[Parallelization]
+```
+
+We hope these features establish SAIUnit as a reliable physical unit handling solution for general AI-driven scientific computing scenarios.
+
+A quick example:
+
+```python
+
+import saiunit as u
+
+# Define a physical quantity
+x = 3.0 * u.meter
+x
+# [out] 3. * meter
+
+# autograd
+f = lambda x: x ** 3
+u.autograd.grad(f)(x)
+# [out] 27. * meter2 
+
+
+# JIT
+import jax
+jax.jit(f)(x)
+# [out] 27. * klitre
+
+# vmap
+jax.vmap(f)(u.math.arange(0. * u.mV, 10. * u.mV, 1. * u.mV))
+# [out]  ArrayImpl([  0.,   1.,   8.,  27.,  64., 125., 216., 343., 512., 729.]) * mvolt3
+```
+
+
+
+## Installation
+
+``saiunit`` has been well tested on ``python>=3.9`` + ``jax>=0.4.30`` environments, and can be installed on Windows, Linux, and MacOS.
+
+You can install ``saiunit`` via pip:
+
+```bash
+pip install saiunit --upgrade
+```
+
+which should install in about 1 minute. If you want to install the latest version from the source, you can clone the repository and install it:
+
+```bash
+git clone https://github.com/chaobrain/saiunit.git
+cd saiunit
+pip install -e .
+```
+
+Alternatively, you can install `BrainX`, which bundles `saiunit` with other compatible packages for a comprehensive brain modeling ecosystem:
+
+```bash
+pip install BrainX -U
+```
+
+## Documentation
+
+The official documentation is hosted on Read the Docs: [https://saiunit.readthedocs.io](https://saiunit.readthedocs.io)
+
+
+
+## Citation
+
+```bibtex
+@article{wang2025integrating,
+  title={Integrating physical units into high-performance AI-driven scientific computing},
+  author={Wang, Chaoming and He, Sichao and Luo, Shouwei and Huan, Yuxiang and Wu, Si},
+  journal={Nature Communications},
+  volume={16},
+  number={1},
+  pages={3609},
+  year={2025},
+  publisher={Nature Publishing Group UK London},
+  url={https://doi.org/10.1038/s41467-025-58626-4}
+}
+```
+
+
+## Ecosystem
+
+`saiunit` has been deeply integrated into following diverse projects, such as:
+
+- [``brainstate``](https://github.com/chaobrain/brainstate): A State-based Transformation System for Program Compilation and Augmentation
+- [``braintaichi``](https://github.com/chaobrain/braintaichi): Leveraging Taichi Lang to customize brain dynamics operators
+- [``braintools``](https://github.com/chaobrain/braintools): The Common Toolbox for Brain Dynamics Programming.
+- [``dendritex``](https://github.com/chaobrain/dendritex): Dendritic Modeling in JAX
+- [``pinnx``](https://github.com/chaobrain/pinnx): Physics-Informed Neural Networks for Scientific Machine Learning in JAX.
+
+
+Other unofficial projects include:
+
+- [``diffrax``](https://github.com/chaoming0625/diffrax): Numerical differential equation solvers in JAX.
+- [``jax-md``](https://github.com/Routhleck/jax-md): Differentiable Molecular Dynamics in JAX
+- [``Catalax``](https://github.com/Routhleck/Catalax): JAX-based framework to model biological systems
+- ...
+
+
+## Acknowledgement
+
+The initial version of the project benefited a lot from the following projects:
+
+- [``astropy.units``](https://docs.astropy.org/en/stable/units/index.html): physical units in ``astropy``.
+- [``brian2.units``](https://brian2.readthedocs.io/en/stable/user/units.html): physical units in ``brian2``.
+

saiunit-0.0.17/README.md

@@ -0,0 +1,153 @@
+<p align="center">
+  	<img alt="Header image of SAIUnit." src="https://raw.githubusercontent.com/chaobrain/saiunit/main/docs/_static/logo.png" width=80%>
+</p> 
+
+
+
+<p align="center">
+	<a href="https://pypi.org/project/saiunit/"><img alt="Supported Python Version" src="https://img.shields.io/pypi/pyversions/saiunit"></a>
+	<a href="https://github.com/chaobrain/saiunit/blob/main/LICENSE"><img alt="LICENSE" src="https://img.shields.io/badge/License-Apache%202.0-blue.svg"></a>
+    <a href='https://saiunit.readthedocs.io/?badge=latest'>
+        <img src='https://readthedocs.org/projects/saiunit/badge/?version=latest' alt='Documentation Status' />
+    </a>  	
+    <a href="https://badge.fury.io/py/saiunit"><img alt="PyPI version" src="https://badge.fury.io/py/saiunit.svg"></a>
+    <a href="https://github.com/chaobrain/saiunit/actions/workflows/CI.yml"><img alt="Continuous Integration" src="https://github.com/chaobrain/saiunit/actions/workflows/CI.yml/badge.svg"></a>
+    <a href="https://pepy.tech/projects/saiunit"><img src="https://static.pepy.tech/badge/saiunit" alt="PyPI Downloads"></a>
+</p>
+
+
+## Motivation
+
+[SAIUnit](https://github.com/chaobrain/saiunit) (/saɪ ˈjuːnɪt/) is designed to provide physical units and unit-aware mathematical systems tailored for **S**cientific **AI** within JAX. In this context, Scientific AI refers to the use of AI models or tools to advance scientific computations. SAIUnit evolves from our [BrainUnit](https://github.com/chaobrain/brainunit), a unit framework originally developed for brain dynamics modeling, extending its capabilities to support a broader range of scientific computing applications. SAIUnit is committed to providing rigorous and automatic physical unit conversion and analysis system for general AI-driven scientific computing. 
+
+
+
+## Features
+
+Compared to existing unit libraries, such as [Quantities](https://github.com/python-quantities/python-quantities) and [Pint](https://github.com/hgrecco/pint), SAIUnit introduces a rigorous physical unit system specifically designed to support AI computations (e.g., automatic differentiation, just-in-time compilation, and parallelization). Its unique advantages include:
+
+- Integration of over 2,000 commonly used physical units and constants
+- Implementation of more than 500 unit-aware mathematical functions
+- Deep integration with JAX, providing comprehensive support for modern AI framework features including automatic differentiation (autograd), just-in-time compilation (JIT), vectorization, and parallel computation
+- Unit conversion and analysis are performed at compilation time, resulting in zero runtime overhead
+- Strict physical unit type checking and dimensional inference system, detecting unit inconsistencies during compilation
+
+
+```mermaid
+graph TD
+    A[SAIUnit] --> B[Physical Units]
+    A --> C[Mathematical Functions]
+    A --> D[JAX Integration]
+    B --> B1[2000+ Units]
+    B --> B2[Physical Constants]
+    C --> C1[500+ Unit-aware Functions]
+    D --> D1[Autograd]
+    D --> D2[JIT Compilation]
+    D --> D3[Vectorization]
+    D --> D4[Parallelization]
+```
+
+We hope these features establish SAIUnit as a reliable physical unit handling solution for general AI-driven scientific computing scenarios.
+
+A quick example:
+
+```python
+
+import saiunit as u
+
+# Define a physical quantity
+x = 3.0 * u.meter
+x
+# [out] 3. * meter
+
+# autograd
+f = lambda x: x ** 3
+u.autograd.grad(f)(x)
+# [out] 27. * meter2 
+
+
+# JIT
+import jax
+jax.jit(f)(x)
+# [out] 27. * klitre
+
+# vmap
+jax.vmap(f)(u.math.arange(0. * u.mV, 10. * u.mV, 1. * u.mV))
+# [out]  ArrayImpl([  0.,   1.,   8.,  27.,  64., 125., 216., 343., 512., 729.]) * mvolt3
+```
+
+
+
+## Installation
+
+``saiunit`` has been well tested on ``python>=3.9`` + ``jax>=0.4.30`` environments, and can be installed on Windows, Linux, and MacOS.
+
+You can install ``saiunit`` via pip:
+
+```bash
+pip install saiunit --upgrade
+```
+
+which should install in about 1 minute. If you want to install the latest version from the source, you can clone the repository and install it:
+
+```bash
+git clone https://github.com/chaobrain/saiunit.git
+cd saiunit
+pip install -e .
+```
+
+Alternatively, you can install `BrainX`, which bundles `saiunit` with other compatible packages for a comprehensive brain modeling ecosystem:
+
+```bash
+pip install BrainX -U
+```
+
+## Documentation
+
+The official documentation is hosted on Read the Docs: [https://saiunit.readthedocs.io](https://saiunit.readthedocs.io)
+
+
+
+## Citation
+
+```bibtex
+@article{wang2025integrating,
+  title={Integrating physical units into high-performance AI-driven scientific computing},
+  author={Wang, Chaoming and He, Sichao and Luo, Shouwei and Huan, Yuxiang and Wu, Si},
+  journal={Nature Communications},
+  volume={16},
+  number={1},
+  pages={3609},
+  year={2025},
+  publisher={Nature Publishing Group UK London},
+  url={https://doi.org/10.1038/s41467-025-58626-4}
+}
+```
+
+
+## Ecosystem
+
+`saiunit` has been deeply integrated into following diverse projects, such as:
+
+- [``brainstate``](https://github.com/chaobrain/brainstate): A State-based Transformation System for Program Compilation and Augmentation
+- [``braintaichi``](https://github.com/chaobrain/braintaichi): Leveraging Taichi Lang to customize brain dynamics operators
+- [``braintools``](https://github.com/chaobrain/braintools): The Common Toolbox for Brain Dynamics Programming.
+- [``dendritex``](https://github.com/chaobrain/dendritex): Dendritic Modeling in JAX
+- [``pinnx``](https://github.com/chaobrain/pinnx): Physics-Informed Neural Networks for Scientific Machine Learning in JAX.
+
+
+Other unofficial projects include:
+
+- [``diffrax``](https://github.com/chaoming0625/diffrax): Numerical differential equation solvers in JAX.
+- [``jax-md``](https://github.com/Routhleck/jax-md): Differentiable Molecular Dynamics in JAX
+- [``Catalax``](https://github.com/Routhleck/Catalax): JAX-based framework to model biological systems
+- ...
+
+
+## Acknowledgement
+
+The initial version of the project benefited a lot from the following projects:
+
+- [``astropy.units``](https://docs.astropy.org/en/stable/units/index.html): physical units in ``astropy``.
+- [``brian2.units``](https://brian2.readthedocs.io/en/stable/user/units.html): physical units in ``brian2``.
+

saiunit-0.0.17/brainunit/brainunit/__init__.py

@@ -0,0 +1,65 @@
+# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+
+import saiunit
+
+__version__ = saiunit.__version__
+
+from . import autograd
+from . import constants
+from . import fft
+from . import lax
+from . import linalg
+from . import math
+from . import sparse
+from ._base import *
+from ._base import __all__ as _base_all
+from ._celsius import *
+from ._celsius import __all__ as _celsius_all
+from ._unit_common import *
+from ._unit_common import __all__ as _common_all
+from ._unit_constants import *
+from ._unit_constants import __all__ as _constants_all
+from ._unit_shortcuts import *
+from ._unit_shortcuts import __all__ as _std_units_all
+
+__all__ = (
+    [
+        'math',
+        'linalg',
+        'autograd',
+        'fft',
+        'constants',
+        'sparse'
+    ] +
+    _common_all +
+    _std_units_all +
+    _base_all +
+    _constants_all +
+    _celsius_all
+)
+del _common_all, _std_units_all, _base_all, _celsius_all, _constants_all, saiunit
+
+# old version compatibility
+avogadro_constant = constants.avogadro
+boltzmann_constant = constants.boltzmann
+electric_constant = constants.electric
+electron_mass = constants.electron_mass
+elementary_charge = constants.elementary_charge
+faraday_constant = constants.faraday
+gas_constant = constants.gas
+magnetic_constant = constants.magnetic
+molar_mass_constant = constants.molar_mass

saiunit-0.0.17/brainunit/brainunit/_base.py

@@ -0,0 +1,20 @@
+# Copyright 2025 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+# -*- coding: utf-8 -*-
+
+from saiunit._base import *
+from saiunit._base import __all__
+

saiunit-0.0.17/brainunit/brainunit/_celsius.py

@@ -0,0 +1,20 @@
+# Copyright 2025 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+# -*- coding: utf-8 -*-
+
+from saiunit._celsius import *
+from saiunit._celsius import __all__
+

saiunit-0.0.17/brainunit/brainunit/_unit_common.py

@@ -0,0 +1,19 @@
+# Copyright 2025 BDP Ecosystem Limited. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+# ==============================================================================
+
+# -*- coding: utf-8 -*-
+
+from saiunit._unit_common import *
+from saiunit._unit_common import __all__