sagittarius-py 1.0.9__tar.gz

sagittarius_py-1.0.9/LICENSE

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sagittarius_py-1.0.9/MANIFEST.in

@@ -0,0 +1,3 @@
+prune tests
+global-exclude *.py[cod]
+global-exclude __pycache__

sagittarius_py-1.0.9/PKG-INFO

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+Metadata-Version: 2.4
+Name: sagittarius-py
+Version: 1.0.9
+Summary: A neutral-atom quantum emulator with Julia and Python SDKs
+Author: Sagittarius contributors
+License-Expression: Apache-2.0
+Project-URL: Documentation, https://github.com/Ouyxw/Sagittarius/tree/main/docs
+Project-URL: Homepage, https://github.com/Ouyxw/Sagittarius
+Project-URL: Issues, https://github.com/Ouyxw/Sagittarius/issues
+Project-URL: Source, https://github.com/Ouyxw/Sagittarius
+Keywords: neutral atoms,rydberg,quantum simulation,julia,scientific computing
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering :: Physics
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+Requires-Dist: juliacall>=0.9.35
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: matplotlib
+Requires-Dist: networkx
+Requires-Dist: docplex>=2.32.264
+Requires-Dist: pulp>=3.3.0
+Requires-Dist: seaborn>=0.13.2
+Requires-Dist: scipy>=1.13.1
+Requires-Dist: juliapkg>=0.1.24
+Requires-Dist: click
+Dynamic: license-file
+
+# Sagittarius
+
+Sagittarius is a research SDK for classical simulation of Rydberg neutral-atom analog dynamics. It combines a Julia physics and solver backend with a Python SDK for experiment-oriented pulse studies and algorithm prototypes.
+
+The project is under active development. APIs, backend support, and benchmark results may change unless covered by tests and documented artifacts. Sagittarius is a simulation layer, not a calibrated hardware control stack.
+
+## Capabilities
+
+- 2D and 3D atom registers, including chains, square lattices, and unit-disk graphs.
+- Full and Rydberg-blockade-reduced Hilbert spaces.
+- Global and local Rabi-frequency and detuning controls.
+- Constant, ramp, piecewise, Gaussian, Blackman, sinc, and sine-squared pulses.
+- Schrodinger, Lindblad, and Monte Carlo wave-function evolution.
+- Per-atom Rydberg populations and parameter sweeps.
+- CPU execution and experimental GPU backends, with CUDA as the primary target.
+- Python and Julia APIs with shared physical semantics.
+- Runtime diagnostics and versioned result serialization.
+- MWIS-oriented register and visualization primitives for unit-disk-graph studies.
+
+See the [API guides](docs/README.md#api-guides) and [physics guides](docs/README.md#physics-guides) for the supported public contracts.
+
+## Repository Layout
+
+```text
+Sagittarius/
+|-- Sagittarius.jl/          # Julia backend
+|-- sagittarius_py/          # Python SDK and tests
+|-- docs/                    # User, API, and physics documentation
+`-- scripts/                 # Repository maintenance tools
+```
+
+Keep long-running experiments in a separate project rather than under this repository.
+
+## Installation
+
+Requirements: Git, Julia 1.10.3 or newer, a Python version supported by `sagittarius_py/pyproject.toml`, and optionally `uv`.
+
+For contributors and local development, use a complete source checkout followed by Python dependency synchronization and JuliaPkg resolution. Editable/source installs prefer the top-level `Sagittarius.jl/` backend so Julia edits take effect immediately, while released wheels use the embedded backend under `sagittarius/julia/Sagittarius.jl`.
+
+```bash
+git clone <repository_url> Sagittarius
+cd Sagittarius/sagittarius_py
+uv sync
+uv run python -m juliapkg resolve
+```
+
+Without `uv`:
+
+```bash
+cd Sagittarius/sagittarius_py
+python -m pip install -e .
+python -m juliapkg resolve
+```
+
+The `pip install -e .` path is development-only and still depends on the editable source checkout for Python code updates. A production PyPI release is being prepared but is not published yet; do not use an unqualified `pip install sagittarius-py` command until the release record says that the package is available. Once published, the authoritative consumer-install instructions will be in the [Python package installation guide](docs/getting-started/python/package-installation.md).
+
+For source installs, backend setup, package-release status, container setup, and environment troubleshooting, see the [installation overview](docs/getting-started/installation.md). Python-specific setup lives under [docs/getting-started/python](docs/getting-started/python/source-installation.md); Julia-native setup lives under [docs/getting-started/julia](docs/getting-started/julia/projects.md).
+
+### Independent Python Projects
+
+```bash
+mkdir -p ~/workspace/my_experiment
+cd ~/workspace/my_experiment
+uv init
+uv add --editable ../Sagittarius/sagittarius_py
+uv run python -m juliapkg resolve
+uv run python scripts/rabi_simulation.py
+```
+
+### Independent Julia Projects
+
+```bash
+mkdir -p ~/workspace/my_julia_experiment/scripts
+cd ~/workspace/my_julia_experiment
+julia --project=. -e 'using Pkg; Pkg.develop(path="../Sagittarius/Sagittarius.jl"); Pkg.instantiate()'
+julia --project=. scripts/rabi_simulation.jl
+```
+
+Use `--project=.` instead of modifying `JULIA_LOAD_PATH`. The [Julia projects guide](docs/getting-started/julia/projects.md) contains the recommended layout and a Julia example.
+
+## Python Quick Start
+
+This example runs a one-atom Rabi oscillation and records the Rydberg population:
+
+```python
+import numpy as np
+from sagittarius import Atom, Register, Simulation, PulseSequence, SolverConfig
+
+reg = Register([Atom(0.0, 0.0, 0.0)], C6=0.0)
+sim = Simulation(
+    reg,
+    PulseSequence(omega=2.0 * np.pi, delta=0.0),
+    SolverConfig(reltol=1e-7, abstol=1e-7),
+)
+
+psi0 = np.array([1.0, 0.0], dtype=complex)
+result = sim.run(psi0, 0.0, 0.5, observables={"pop_atom_0": 0})
+print(result.to_pandas().tail())
+```
+
+For a reduced basis, set `SolverConfig(blockade_radius=...)` and allocate the initial state using the size returned by `sim.validate()`. See the [Python minimal examples](docs/getting-started/python/minimal-examples.md) for complete full- and reduced-basis workflows.
+
+Solver selection is explicit through `SolverConfig(method=...)`. The default is adaptive `Tsit5`; `Vern9` is available for higher-accuracy adaptive checks; fixed-step `RK4` requires `SolverConfig(method="RK4", adaptive=False, dt=...)`. Run manifests record both requested and effective solver settings.
+
+## Julia Quick Start
+
+```julia
+using Sagittarius
+
+reg = chain_register(3; spacing=0.5, C6=100.0)
+context = reduced_basis_context(reg; blockade_radius=0.6)
+H = hamiltonian(reg, fill(1.0, 3), zeros(3); basis_context=context)
+
+println("Reduced basis size: ", length(context.basis))
+```
+
+See the [Julia native API](docs/api/SPEC-API-003-julia-native-api.md) and [Python/Julia parity contract](docs/api/SPEC-API-002-python-julia-parity.md).
+
+## Physical Units and Indexing
+
+Numeric inputs do not carry units. Coordinates, times, angular frequencies, interaction coefficients, and decay rates must use one consistent unit system. See [physical units and parameter selection](docs/physics/SPEC-PHYS-001-units.md) for `blockade_radius`, `C6`, pulse parameters, and open-system rates.
+
+Python atom indices are zero-based and follow `Register.atoms` order; Julia indices are one-based. See the [pulse and indexing contract](docs/api/SPEC-API-001-pulse-and-indexing-contract.md).
+
+## GPU and Diagnostics
+
+Enable GPU execution through `SolverConfig`:
+
+```python
+cfg = SolverConfig(use_gpu=True, gpu_backend="CUDA")
+```
+
+Backend names include `CUDA`, `AMDGPU`, and `Metal`, but support and test coverage differ. CPU is the stable default, CUDA is experimental, and AMDGPU/Metal remain planned backends.
+
+```python
+from sagittarius import backend_maturity, doctor, version_info
+
+print(version_info())
+print(backend_maturity())
+print(doctor(backend="CUDA", initialize_backend=True))
+```
+
+CUDA is the primary containerized development target, but remains experimental. GPU execution still requires compatible host drivers, runtime libraries, and device passthrough.
+
+## Verification
+
+```bash
+cd sagittarius_py
+uv run sagittarius doctor
+uv run python -m pytest tests/
+```
+
+CPU tests do not require CUDA. GPU tests are opt-in and require a working backend. Performance results must record the hardware, solver settings, backend configuration, version metadata, and retained benchmark artifacts.
+
+## Documentation
+
+- [Installation overview](docs/getting-started/installation.md)
+- [Python minimal examples](docs/getting-started/python/minimal-examples.md)
+- [Julia minimal examples](docs/getting-started/julia/minimal-examples.md)
+- [Physical units and parameter selection](docs/physics/SPEC-PHYS-001-units.md)
+- [Python/Julia parity contract](docs/api/SPEC-API-002-python-julia-parity.md)
+- [Solver configuration](docs/api/SPEC-API-005-solver-configuration.md)
+- [Noise models](docs/physics/SPEC-PHYS-004-noise-models.md)
+
+## License
+
+Sagittarius is distributed under the [Apache License 2.0](LICENSE).

sagittarius_py-1.0.9/README.md

@@ -0,0 +1,167 @@
+# Sagittarius
+
+Sagittarius is a research SDK for classical simulation of Rydberg neutral-atom analog dynamics. It combines a Julia physics and solver backend with a Python SDK for experiment-oriented pulse studies and algorithm prototypes.
+
+The project is under active development. APIs, backend support, and benchmark results may change unless covered by tests and documented artifacts. Sagittarius is a simulation layer, not a calibrated hardware control stack.
+
+## Capabilities
+
+- 2D and 3D atom registers, including chains, square lattices, and unit-disk graphs.
+- Full and Rydberg-blockade-reduced Hilbert spaces.
+- Global and local Rabi-frequency and detuning controls.
+- Constant, ramp, piecewise, Gaussian, Blackman, sinc, and sine-squared pulses.
+- Schrodinger, Lindblad, and Monte Carlo wave-function evolution.
+- Per-atom Rydberg populations and parameter sweeps.
+- CPU execution and experimental GPU backends, with CUDA as the primary target.
+- Python and Julia APIs with shared physical semantics.
+- Runtime diagnostics and versioned result serialization.
+- MWIS-oriented register and visualization primitives for unit-disk-graph studies.
+
+See the [API guides](docs/README.md#api-guides) and [physics guides](docs/README.md#physics-guides) for the supported public contracts.
+
+## Repository Layout
+
+```text
+Sagittarius/
+|-- Sagittarius.jl/          # Julia backend
+|-- sagittarius_py/          # Python SDK and tests
+|-- docs/                    # User, API, and physics documentation
+`-- scripts/                 # Repository maintenance tools
+```
+
+Keep long-running experiments in a separate project rather than under this repository.
+
+## Installation
+
+Requirements: Git, Julia 1.10.3 or newer, a Python version supported by `sagittarius_py/pyproject.toml`, and optionally `uv`.
+
+For contributors and local development, use a complete source checkout followed by Python dependency synchronization and JuliaPkg resolution. Editable/source installs prefer the top-level `Sagittarius.jl/` backend so Julia edits take effect immediately, while released wheels use the embedded backend under `sagittarius/julia/Sagittarius.jl`.
+
+```bash
+git clone <repository_url> Sagittarius
+cd Sagittarius/sagittarius_py
+uv sync
+uv run python -m juliapkg resolve
+```
+
+Without `uv`:
+
+```bash
+cd Sagittarius/sagittarius_py
+python -m pip install -e .
+python -m juliapkg resolve
+```
+
+The `pip install -e .` path is development-only and still depends on the editable source checkout for Python code updates. A production PyPI release is being prepared but is not published yet; do not use an unqualified `pip install sagittarius-py` command until the release record says that the package is available. Once published, the authoritative consumer-install instructions will be in the [Python package installation guide](docs/getting-started/python/package-installation.md).
+
+For source installs, backend setup, package-release status, container setup, and environment troubleshooting, see the [installation overview](docs/getting-started/installation.md). Python-specific setup lives under [docs/getting-started/python](docs/getting-started/python/source-installation.md); Julia-native setup lives under [docs/getting-started/julia](docs/getting-started/julia/projects.md).
+
+### Independent Python Projects
+
+```bash
+mkdir -p ~/workspace/my_experiment
+cd ~/workspace/my_experiment
+uv init
+uv add --editable ../Sagittarius/sagittarius_py
+uv run python -m juliapkg resolve
+uv run python scripts/rabi_simulation.py
+```
+
+### Independent Julia Projects
+
+```bash
+mkdir -p ~/workspace/my_julia_experiment/scripts
+cd ~/workspace/my_julia_experiment
+julia --project=. -e 'using Pkg; Pkg.develop(path="../Sagittarius/Sagittarius.jl"); Pkg.instantiate()'
+julia --project=. scripts/rabi_simulation.jl
+```
+
+Use `--project=.` instead of modifying `JULIA_LOAD_PATH`. The [Julia projects guide](docs/getting-started/julia/projects.md) contains the recommended layout and a Julia example.
+
+## Python Quick Start
+
+This example runs a one-atom Rabi oscillation and records the Rydberg population:
+
+```python
+import numpy as np
+from sagittarius import Atom, Register, Simulation, PulseSequence, SolverConfig
+
+reg = Register([Atom(0.0, 0.0, 0.0)], C6=0.0)
+sim = Simulation(
+    reg,
+    PulseSequence(omega=2.0 * np.pi, delta=0.0),
+    SolverConfig(reltol=1e-7, abstol=1e-7),
+)
+
+psi0 = np.array([1.0, 0.0], dtype=complex)
+result = sim.run(psi0, 0.0, 0.5, observables={"pop_atom_0": 0})
+print(result.to_pandas().tail())
+```
+
+For a reduced basis, set `SolverConfig(blockade_radius=...)` and allocate the initial state using the size returned by `sim.validate()`. See the [Python minimal examples](docs/getting-started/python/minimal-examples.md) for complete full- and reduced-basis workflows.
+
+Solver selection is explicit through `SolverConfig(method=...)`. The default is adaptive `Tsit5`; `Vern9` is available for higher-accuracy adaptive checks; fixed-step `RK4` requires `SolverConfig(method="RK4", adaptive=False, dt=...)`. Run manifests record both requested and effective solver settings.
+
+## Julia Quick Start
+
+```julia
+using Sagittarius
+
+reg = chain_register(3; spacing=0.5, C6=100.0)
+context = reduced_basis_context(reg; blockade_radius=0.6)
+H = hamiltonian(reg, fill(1.0, 3), zeros(3); basis_context=context)
+
+println("Reduced basis size: ", length(context.basis))
+```
+
+See the [Julia native API](docs/api/SPEC-API-003-julia-native-api.md) and [Python/Julia parity contract](docs/api/SPEC-API-002-python-julia-parity.md).
+
+## Physical Units and Indexing
+
+Numeric inputs do not carry units. Coordinates, times, angular frequencies, interaction coefficients, and decay rates must use one consistent unit system. See [physical units and parameter selection](docs/physics/SPEC-PHYS-001-units.md) for `blockade_radius`, `C6`, pulse parameters, and open-system rates.
+
+Python atom indices are zero-based and follow `Register.atoms` order; Julia indices are one-based. See the [pulse and indexing contract](docs/api/SPEC-API-001-pulse-and-indexing-contract.md).
+
+## GPU and Diagnostics
+
+Enable GPU execution through `SolverConfig`:
+
+```python
+cfg = SolverConfig(use_gpu=True, gpu_backend="CUDA")
+```
+
+Backend names include `CUDA`, `AMDGPU`, and `Metal`, but support and test coverage differ. CPU is the stable default, CUDA is experimental, and AMDGPU/Metal remain planned backends.
+
+```python
+from sagittarius import backend_maturity, doctor, version_info
+
+print(version_info())
+print(backend_maturity())
+print(doctor(backend="CUDA", initialize_backend=True))
+```
+
+CUDA is the primary containerized development target, but remains experimental. GPU execution still requires compatible host drivers, runtime libraries, and device passthrough.
+
+## Verification
+
+```bash
+cd sagittarius_py
+uv run sagittarius doctor
+uv run python -m pytest tests/
+```
+
+CPU tests do not require CUDA. GPU tests are opt-in and require a working backend. Performance results must record the hardware, solver settings, backend configuration, version metadata, and retained benchmark artifacts.
+
+## Documentation
+
+- [Installation overview](docs/getting-started/installation.md)
+- [Python minimal examples](docs/getting-started/python/minimal-examples.md)
+- [Julia minimal examples](docs/getting-started/julia/minimal-examples.md)
+- [Physical units and parameter selection](docs/physics/SPEC-PHYS-001-units.md)
+- [Python/Julia parity contract](docs/api/SPEC-API-002-python-julia-parity.md)
+- [Solver configuration](docs/api/SPEC-API-005-solver-configuration.md)
+- [Noise models](docs/physics/SPEC-PHYS-004-noise-models.md)
+
+## License
+
+Sagittarius is distributed under the [Apache License 2.0](LICENSE).

sagittarius_py-1.0.9/pyproject.toml

@@ -0,0 +1,80 @@
+[project]
+name = "sagittarius-py"
+version = "1.0.9"
+description = "A neutral-atom quantum emulator with Julia and Python SDKs"
+readme = "README.md"
+requires-python = ">=3.10"
+license = "Apache-2.0"
+license-files = ["LICENSE", "NOTICE"]
+authors = [
+    { name = "Sagittarius contributors" },
+]
+keywords = [
+    "neutral atoms",
+    "rydberg",
+    "quantum simulation",
+    "julia",
+    "scientific computing",
+]
+classifiers = [
+    "Development Status :: 5 - Production/Stable",
+    "Intended Audience :: Science/Research",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Topic :: Scientific/Engineering :: Physics",
+]
+dependencies = [
+    "juliacall>=0.9.35",
+    "numpy",
+    "pandas",
+    "matplotlib",
+    "networkx",
+    "docplex>=2.32.264",
+    "pulp>=3.3.0",
+    "seaborn>=0.13.2",
+    "scipy>=1.13.1",
+    "juliapkg>=0.1.24",
+    "click",
+]
+
+[project.urls]
+Documentation = "https://github.com/Ouyxw/Sagittarius/tree/main/docs"
+Homepage = "https://github.com/Ouyxw/Sagittarius"
+Issues = "https://github.com/Ouyxw/Sagittarius/issues"
+Source = "https://github.com/Ouyxw/Sagittarius"
+
+[project.scripts]
+sagittarius = "sagittarius.cli:main"
+
+[dependency-groups]
+dev = [
+    "pytest",
+    "tomli; python_version < '3.11'",
+    "twine",
+]
+
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools]
+packages = ["sagittarius"]
+
+[tool.setuptools.package-data]
+sagittarius = [
+    "juliapkg.json",
+    "juliapkg-cuda.json",
+    "julia/Sagittarius.jl/Project.toml",
+    "julia/Sagittarius.jl/Manifest.toml",
+    "julia/Sagittarius.jl/test/*.jl",
+    "julia/Sagittarius.jl/src/*.jl",
+]
+
+[tool.pytest.ini_options]
+markers = [
+    "requires_julia_backend: tests that require a working Julia/PythonCall backend",
+    "requires_cuda_backend: tests that require SAGITTARIUS_ENABLE_GPU_TESTS=1 and a working CUDA backend",
+]