rust-sasa-python 0.5.0__tar.gz → 0.6.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -8,56 +8,6 @@ version = "1.0.2"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe"
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- [[package]]
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- name = "anstream"
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- version = "0.6.19"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "301af1932e46185686725e0fad2f8f2aa7da69dd70bf6ecc44d6b703844a3933"
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- dependencies = [
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- "anstyle",
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- "anstyle-parse",
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- "anstyle-query",
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- "anstyle-wincon",
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- "colorchoice",
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- "is_terminal_polyfill",
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- "utf8parse",
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- ]
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-
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- [[package]]
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- name = "anstyle"
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- version = "1.0.11"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "862ed96ca487e809f1c8e5a8447f6ee2cf102f846893800b20cebdf541fc6bbd"
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-
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- [[package]]
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- name = "anstyle-parse"
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- version = "0.2.7"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "4e7644824f0aa2c7b9384579234ef10eb7efb6a0deb83f9630a49594dd9c15c2"
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- dependencies = [
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- "utf8parse",
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- ]
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-
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- [[package]]
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- name = "anstyle-query"
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- version = "1.1.3"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "6c8bdeb6047d8983be085bab0ba1472e6dc604e7041dbf6fcd5e71523014fae9"
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- dependencies = [
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- "windows-sys 0.59.0",
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- ]
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-
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- [[package]]
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- name = "anstyle-wincon"
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- version = "3.0.9"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "403f75924867bb1033c59fbf0797484329750cfbe3c4325cd33127941fabc882"
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- dependencies = [
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- "anstyle",
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- "once_cell_polyfill",
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- "windows-sys 0.59.0",
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- ]
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-
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  [[package]]
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  name = "approx"
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  version = "0.5.1"
@@ -79,12 +29,6 @@ version = "2.10.0"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "812e12b5285cc515a9c72a5c1d3b6d46a19dac5acfef5265968c166106e31dd3"
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- [[package]]
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- name = "bumpalo"
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- version = "3.19.0"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "46c5e41b57b8bba42a04676d81cb89e9ee8e859a1a66f80a5a72e1cb76b34d43"
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-
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  [[package]]
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  name = "bytemuck"
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  version = "1.15.0"
@@ -112,65 +56,6 @@ version = "1.0.0"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
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- [[package]]
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- name = "clap"
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- version = "4.5.53"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "c9e340e012a1bf4935f5282ed1436d1489548e8f72308207ea5df0e23d2d03f8"
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- dependencies = [
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- "clap_builder",
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- "clap_derive",
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- ]
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-
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- [[package]]
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- name = "clap_builder"
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- version = "4.5.53"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "d76b5d13eaa18c901fd2f7fca939fefe3a0727a953561fefdf3b2922b8569d00"
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- dependencies = [
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- "anstream",
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- "anstyle",
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- "clap_lex",
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- "strsim",
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- ]
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-
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- [[package]]
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- name = "clap_derive"
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- version = "4.5.49"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "2a0b5487afeab2deb2ff4e03a807ad1a03ac532ff5a2cee5d86884440c7f7671"
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- dependencies = [
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- "heck",
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- "proc-macro2 1.0.95",
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- "quote 1.0.36",
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- "syn",
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- ]
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-
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- [[package]]
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- name = "clap_lex"
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- version = "0.7.5"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "b94f61472cee1439c0b966b47e3aca9ae07e45d070759512cd390ea2bebc6675"
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-
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- [[package]]
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- name = "colorchoice"
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- version = "1.0.4"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "b05b61dc5112cbb17e4b6cd61790d9845d13888356391624cbe7e41efeac1e75"
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-
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- [[package]]
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- name = "console"
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- version = "0.16.0"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "2e09ced7ebbccb63b4c65413d821f2e00ce54c5ca4514ddc6b3c892fdbcbc69d"
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- dependencies = [
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- "encode_unicode",
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- "libc",
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- "once_cell",
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- "unicode-width",
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- "windows-sys 0.60.2",
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- ]
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-
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  [[package]]
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  name = "crc32fast"
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  version = "1.4.0"
@@ -221,12 +106,6 @@ version = "1.11.0"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "a47c1c47d2f5964e29c61246e81db715514cd532db6b5116a25ea3c03d6780a2"
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- [[package]]
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- name = "encode_unicode"
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- version = "1.0.0"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "34aa73646ffb006b8f5147f3dc182bd4bcb190227ce861fc4a4844bf8e3cb2c0"
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-
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  [[package]]
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  name = "equivalent"
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  version = "1.0.1"
@@ -290,47 +169,12 @@ dependencies = [
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  "hashbrown",
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  ]
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- [[package]]
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- name = "indicatif"
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- version = "0.18.3"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "9375e112e4b463ec1b1c6c011953545c65a30164fbab5b581df32b3abf0dcb88"
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- dependencies = [
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- "console",
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- "portable-atomic",
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- "unicode-width",
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- "unit-prefix",
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- "web-time",
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- ]
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-
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  [[package]]
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  name = "indoc"
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  version = "2.0.5"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "b248f5224d1d606005e02c97f5aa4e88eeb230488bcc03bc9ca4d7991399f2b5"
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- [[package]]
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- name = "is_terminal_polyfill"
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- version = "1.70.1"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf"
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-
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- [[package]]
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- name = "itoa"
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- version = "1.0.15"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c"
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-
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- [[package]]
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- name = "js-sys"
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- version = "0.3.77"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "1cfaf33c695fc6e08064efbc1f72ec937429614f25eef83af942d0e227c3a28f"
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- dependencies = [
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- "once_cell",
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- "wasm-bindgen",
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- ]
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-
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  [[package]]
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  name = "libc"
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  version = "0.2.153"
@@ -353,12 +197,6 @@ dependencies = [
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  "libc",
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  ]
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- [[package]]
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- name = "log"
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- version = "0.4.27"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "13dc2df351e3202783a1fe0d44375f7295ffb4049267b0f3018346dc122a1d94"
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-
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  [[package]]
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  name = "matrixmultiply"
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  version = "0.3.8"
@@ -369,12 +207,6 @@ dependencies = [
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  "rawpointer",
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  ]
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- [[package]]
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- name = "memchr"
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- version = "2.7.5"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "32a282da65faaf38286cf3be983213fcf1d2e2a58700e808f83f4ea9a4804bc0"
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-
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  name = "memoffset"
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  version = "0.9.1"
@@ -475,12 +307,6 @@ version = "1.19.0"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "3fdb12b2476b595f9358c5161aa467c2438859caa136dec86c26fdd2efe17b92"
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- [[package]]
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- name = "once_cell_polyfill"
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- version = "1.70.1"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "a4895175b425cb1f87721b59f0f286c2092bd4af812243672510e1ac53e2e0ad"
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-
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  [[package]]
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  name = "paste"
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  version = "1.0.14"
@@ -610,16 +436,6 @@ dependencies = [
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  "syn",
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  ]
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- [[package]]
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- name = "quick-xml"
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- version = "0.38.4"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "b66c2058c55a409d601666cffe35f04333cf1013010882cec174a7467cd4e21c"
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- dependencies = [
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- "memchr",
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- "serde",
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- ]
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-
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  [[package]]
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  name = "quote"
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  version = "0.6.13"
@@ -692,27 +508,20 @@ dependencies = [
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  [[package]]
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  name = "rust-sasa"
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- version = "0.7.0"
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+ version = "0.8.0"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "d92c8f75a02c33d1b3e3f233fa84b39cb127041c07ed77bbd0a25cd3fa07c1c5"
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+ checksum = "1949e75286c54b35e81a2b7851d9c1094667adc60d2b66f00811fb2b53815ced"
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  dependencies = [
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- "clap",
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  "fnv",
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- "indicatif",
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- "mimalloc",
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- "nalgebra",
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  "pdbtbx",
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  "pulp",
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- "quick-xml",
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  "rayon",
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- "serde",
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- "serde_json",
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  "snafu",
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  ]
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  [[package]]
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  name = "rust-sasa-python"
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- version = "0.5.0"
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+ version = "0.6.0"
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  dependencies = [
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  "mimalloc",
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  "nalgebra",
@@ -723,12 +532,6 @@ dependencies = [
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  "rust-sasa",
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  ]
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- [[package]]
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- name = "ryu"
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- version = "1.0.20"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "28d3b2b1366ec20994f1fd18c3c594f05c5dd4bc44d8bb0c1c632c8d6829481f"
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  name = "safe_arch"
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  version = "0.7.1"
@@ -768,19 +571,6 @@ dependencies = [
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  "syn",
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- [[package]]
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- name = "serde_json"
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- version = "1.0.145"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "402a6f66d8c709116cf22f558eab210f5a50187f702eb4d7e5ef38d9a7f1c79c"
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- dependencies = [
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- "itoa",
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- "memchr",
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- "ryu",
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- "serde",
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- "serde_core",
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- ]
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-
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  name = "shlex"
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  version = "1.3.0"
@@ -833,12 +623,6 @@ version = "1.2.0"
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  checksum = "a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3"
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- name = "strsim"
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- version = "0.11.1"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f"
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  [[package]]
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  name = "syn"
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  version = "2.0.104"
@@ -868,12 +652,6 @@ version = "1.0.12"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b"
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- [[package]]
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- name = "unicode-width"
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- version = "0.2.1"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "4a1a07cc7db3810833284e8d372ccdc6da29741639ecc70c9ec107df0fa6154c"
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-
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  [[package]]
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  name = "unicode-xid"
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  version = "0.1.0"
@@ -886,91 +664,12 @@ version = "0.2.3"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "c7de7d73e1754487cb58364ee906a499937a0dfabd86bcb980fa99ec8c8fa2ce"
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- [[package]]
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- name = "unit-prefix"
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- version = "0.5.1"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "323402cff2dd658f39ca17c789b502021b3f18707c91cdf22e3838e1b4023817"
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-
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- [[package]]
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- name = "utf8parse"
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- version = "0.2.2"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
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  name = "version_check"
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  source = "registry+https://github.com/rust-lang/crates.io-index"
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  checksum = "0b928f33d975fc6ad9f86c8f283853ad26bdd5b10b7f1542aa2fa15e2289105a"
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- [[package]]
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- name = "wasm-bindgen"
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- version = "0.2.100"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "1edc8929d7499fc4e8f0be2262a241556cfc54a0bea223790e71446f2aab1ef5"
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- dependencies = [
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- "cfg-if",
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- "once_cell",
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- "wasm-bindgen-macro",
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- ]
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- name = "wasm-bindgen-backend"
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- version = "0.2.100"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "2f0a0651a5c2bc21487bde11ee802ccaf4c51935d0d3d42a6101f98161700bc6"
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- dependencies = [
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- "bumpalo",
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- "log",
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- "proc-macro2 1.0.95",
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- "quote 1.0.36",
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- "syn",
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- "wasm-bindgen-shared",
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- ]
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- name = "wasm-bindgen-macro"
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- version = "0.2.100"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "7fe63fc6d09ed3792bd0897b314f53de8e16568c2b3f7982f468c0bf9bd0b407"
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- dependencies = [
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- "quote 1.0.36",
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- "wasm-bindgen-macro-support",
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- ]
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- name = "wasm-bindgen-macro-support"
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- version = "0.2.100"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "8ae87ea40c9f689fc23f209965b6fb8a99ad69aeeb0231408be24920604395de"
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- dependencies = [
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- "proc-macro2 1.0.95",
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- "quote 1.0.36",
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- "syn",
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- "wasm-bindgen-backend",
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- "wasm-bindgen-shared",
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- ]
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- [[package]]
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- name = "wasm-bindgen-shared"
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- version = "0.2.100"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "1a05d73b933a847d6cccdda8f838a22ff101ad9bf93e33684f39c1f5f0eece3d"
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- dependencies = [
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- "unicode-ident",
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- ]
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- name = "web-time"
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- version = "1.1.0"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "5a6580f308b1fad9207618087a65c04e7a10bc77e02c8e84e9b00dd4b12fa0bb"
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- dependencies = [
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- "js-sys",
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- "wasm-bindgen",
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- ]
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-
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  name = "wide"
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  version = "0.7.16"
@@ -980,149 +679,3 @@ dependencies = [
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  "bytemuck",
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  "safe_arch",
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  ]
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-
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- name = "windows-sys"
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- version = "0.59.0"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
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- dependencies = [
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- "windows-targets 0.52.6",
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- ]
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-
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- [[package]]
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- name = "windows-sys"
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- version = "0.60.2"
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- source = "registry+https://github.com/rust-lang/crates.io-index"
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- checksum = "f2f500e4d28234f72040990ec9d39e3a6b950f9f22d3dba18416c35882612bcb"
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- dependencies = [
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- "windows-targets 0.53.2",
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- ]
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-
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- version = "0.52.6"
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@@ -1,6 +1,6 @@
1
1
  [package]
2
2
  name = "rust-sasa-python"
3
- version = "0.5.0"
3
+ version = "0.6.0"
4
4
  edition = "2024"
5
5
  readme = "README.md"
6
6
 
@@ -12,7 +12,7 @@ crate-type = ["cdylib"]
12
12
  [dependencies]
13
13
  pdbtbx = "0.12.0"
14
14
  pyo3 = "0.25.1"
15
- rust-sasa = "0.7.0"
15
+ rust-sasa = "0.8.0"
16
16
  nalgebra = "0.33.2"
17
17
  mimalloc = "0.1.47"
18
18
  num-complex = "0.4.6"
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: rust-sasa-python
3
- Version: 0.5.0
3
+ Version: 0.6.0
4
4
  Classifier: Programming Language :: Rust
5
5
  Classifier: Programming Language :: Python :: Implementation :: CPython
6
6
  Classifier: Programming Language :: Python :: Implementation :: PyPy
@@ -372,7 +372,7 @@ pub fn calculate_sasa_internal(
372
372
  .into_iter()
373
373
  .enumerate()
374
374
  .map(|(index, (pos, radius, parent_id))| Atom {
375
- position: Point3::new(pos.0, pos.1, pos.2),
375
+ position: [pos.0, pos.1, pos.2],
376
376
  id: index,
377
377
  parent_id: Some(parent_id as isize),
378
378
  radius,