rowan-python 3.0.1__tar.gz → 3.0.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {rowan_python-3.0.1 → rowan_python-3.0.4}/PKG-INFO +1 -1
- {rowan_python-3.0.1 → rowan_python-3.0.4}/docs/index.md +1 -0
- rowan_python-3.0.4/examples/descriptors.py +25 -0
- rowan_python-3.0.4/examples/estimate_workflow.py +33 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/webhook.py +3 -1
- {rowan_python-3.0.1 → rowan_python-3.0.4}/pixi.lock +183 -194
- {rowan_python-3.0.1 → rowan_python-3.0.4}/pyproject.toml +1 -1
- rowan_python-3.0.4/rowan/rowan_rdkit/__init__.py +29 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/rowan_rdkit/chem_utils.py +9 -9
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/user.py +1 -1
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/__init__.py +1 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/admet.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/analogue_docking.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/base.py +66 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/basic_calculation.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/batch_docking.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/bde.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/conformer_search.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/descriptors.py +22 -6
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/docking.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/double_ended_ts_search.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/electronic_properties.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/fukui.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/hydrogen_bond_donor_acceptor_strength.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/interaction_energy_decomposition.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/ion_mobility.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/irc.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/macropka.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/membrane_permeability.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/msa.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/multistage_optimization.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/nmr.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/pka.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/pose_analysis_md.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/protein_binder_design.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/protein_cofolding.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/protein_md.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/rbfe_graph.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/redox_potential.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/relative_binding_free_energy_perturbation.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/scan.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/solubility.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/solvent_dependent_conformers.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/spin_states.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/strain.py +3 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/tautomer_search.py +3 -0
- rowan_python-3.0.1/rowan/rowan_rdkit/__init__.py +0 -14
- {rowan_python-3.0.1 → rowan_python-3.0.4}/.envrc +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/.github/workflows/build-and-deploy-docs.yml +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/.github/workflows/python-publish.yml +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/.github/workflows/test.yml +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/.gitignore +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/.pre-commit-config.yaml +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/LICENSE +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/README.md +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/docs/images/deciduous-tree-favicon.png +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/docs/rowan_rdkit.md +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/docs/stylesheets/colors.css +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/PROTAC_solubility.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/admet.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/analogue_docking.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/aqueous_solubility.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/basic_calculation.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/basic_calculation_from_json.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/basic_calculation_with_constraint.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/basic_calculation_with_solvent.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/batch_docking.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/bde.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/boltz_paired_msa.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/boltz_single_msa.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/chai_paired_msa.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/chai_single_msa.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/cofolding_screen.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/colabfold_paired_msa.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/colabfold_single_msa.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/conformer_dependent_redox.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/conformers.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/data/1iep_receptorH.pdb +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/data/citalopram_1iep.xyz +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/data/tyk2_ligands.sdf +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/data/tyk2_structure.pdb +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/data/workflow_example.json +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/dcd_download.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/docking_screen.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/double_ended_ts_search.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/electronic_properties.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/fukui_index.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/hydrogen_bond_basicity.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/interaction_energy_decomposition.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/ion_mobility.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/irc.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/macropka.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/membrane_permeability.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/multistage_optimization.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/nmr.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/optimization.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/pdb_download.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/phenol_pka.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/pka.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/pose_analysis_md.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/protein_binder_design.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/protein_cofolding.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/protein_md.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/rbfe_graph.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/redox_potential.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/relative_binding_free_energy_perturbation.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/retrieve_workflow.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/scan.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/solvent_dependent_conformers.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/spin_states.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/strain.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/tautomer.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/examples/template.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/mkdocs.yml +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/__init__.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/calculation.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/config.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/constants.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/folder.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/molecule.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/project.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/protein.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/py.typed +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/types.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/utils.py +0 -0
- {rowan_python-3.0.1 → rowan_python-3.0.4}/rowan/workflows/constants.py +0 -0
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"""
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Calculate molecular descriptors using the Rowan API.
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Computes molecular descriptors including COSMO descriptors (surface area,
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screening charge, dielectric energy, polar surface area) in water by default.
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See documentation at: https://docs.rowansci.com/science/workflows/descriptors
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"""
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import rowan
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# Set your API key or use the ROWAN_API_KEY environment variable
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# rowan.api_key = "rowan-sk..."
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folder = rowan.get_folder("examples")
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workflow = rowan.submit_descriptors_workflow(
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initial_molecule=rowan.Molecule.from_smiles("CC(=O)Oc1ccccc1C(=O)O"),
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name="Aspirin Descriptors",
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folder=folder,
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)
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print(f"View workflow privately at: https://labs.rowansci.com/descriptors/{workflow.uuid}")
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result = workflow.result()
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print(result)
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# e.g. <DescriptorsResult n=1686>
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"""Compare dispatch info for different property predictions to decide which to submit."""
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import rowan
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folder = rowan.get_folder("examples")
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smiles = "c1ccc(CC(=O)O)cc1" # phenylacetic acid
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# Create drafts, nothing runs yet
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admet_draft = rowan.submit_admet_workflow(
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initial_smiles=smiles, name="Estimate Workflow - ADMET", folder=folder, is_draft=True
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)
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solubility_draft = rowan.submit_solubility_workflow(
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initial_smiles=smiles, name="Estimate Workflow - Solubility", folder=folder, is_draft=True
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)
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membrane_draft = rowan.submit_membrane_permeability_workflow(
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initial_molecule=smiles,
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name="Estimate Workflow - Membrane Permeability",
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folder=folder,
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)
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# Check dispatch info for each
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print("ADMET:", admet_draft.dispatch_info())
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print("Solubility:", solubility_draft.dispatch_info())
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print("Membrane:", membrane_draft.dispatch_info())
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# Pick ADMET, clean up the rest
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membrane_draft.delete()
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result = admet_draft.result()
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print(result)
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folder = rowan.get_folder("examples")
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oseltamivir = "C1CCOC(=O)C1=C[C@@H](OC(CC)CC)[C@H](NC(C)=O)[C@@H]([NH3+])C1CCC1"
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workflow = rowan.submit_admet_workflow(
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name="
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name="Webhook - ADMET",
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folder=folder,
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webhook_url="https://your-server.com/webhook",
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