rowan-python 2.1.12__tar.gz → 2.1.13__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (68) hide show
  1. {rowan_python-2.1.12 → rowan_python-2.1.13}/.github/workflows/build-and-deploy-docs.yml +3 -2
  2. {rowan_python-2.1.12 → rowan_python-2.1.13}/PKG-INFO +2 -2
  3. rowan_python-2.1.13/examples/membrane_permeability.py +25 -0
  4. {rowan_python-2.1.12 → rowan_python-2.1.13}/pixi.lock +339 -364
  5. {rowan_python-2.1.12 → rowan_python-2.1.13}/pyproject.toml +2 -2
  6. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/workflow.py +80 -44
  7. rowan_python-2.1.12/examples/membrane_permeability.py +0 -12
  8. {rowan_python-2.1.12 → rowan_python-2.1.13}/.envrc +0 -0
  9. {rowan_python-2.1.12 → rowan_python-2.1.13}/.github/workflows/python-publish.yml +0 -0
  10. {rowan_python-2.1.12 → rowan_python-2.1.13}/.github/workflows/test.yml +0 -0
  11. {rowan_python-2.1.12 → rowan_python-2.1.13}/.gitignore +0 -0
  12. {rowan_python-2.1.12 → rowan_python-2.1.13}/.pre-commit-config.yaml +0 -0
  13. {rowan_python-2.1.12 → rowan_python-2.1.13}/LICENSE +0 -0
  14. {rowan_python-2.1.12 → rowan_python-2.1.13}/README.md +0 -0
  15. {rowan_python-2.1.12 → rowan_python-2.1.13}/docs/images/deciduous-tree-favicon.png +0 -0
  16. {rowan_python-2.1.12 → rowan_python-2.1.13}/docs/index.md +0 -0
  17. {rowan_python-2.1.12 → rowan_python-2.1.13}/docs/rowan_rdkit.md +0 -0
  18. {rowan_python-2.1.12 → rowan_python-2.1.13}/docs/stylesheets/colors.css +0 -0
  19. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/PROTAC_solubility.py +0 -0
  20. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/admet.py +0 -0
  21. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/aqueous_solubility.py +0 -0
  22. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/basic_calculation.py +0 -0
  23. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/basic_calculation_from_json.py +0 -0
  24. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/basic_calculation_with_constraint.py +0 -0
  25. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/basic_calculation_with_solvent.py +0 -0
  26. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/batch_docking.py +0 -0
  27. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/bde.py +0 -0
  28. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/boltz_paired_msa.py +0 -0
  29. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/boltz_single_msa.py +0 -0
  30. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/chai_paired_msa.py +0 -0
  31. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/chai_single_msa.py +0 -0
  32. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/cofolding_screen.py +0 -0
  33. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/colabfold_paired_msa.py +0 -0
  34. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/colabfold_single_msa.py +0 -0
  35. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/conformer_dependent_redox.py +0 -0
  36. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/conformers.py +0 -0
  37. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/data/workflow_example.json +0 -0
  38. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/dcd_download.py +0 -0
  39. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/docking_screen.py +0 -0
  40. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/double_ended_ts_search.py +0 -0
  41. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/fukui_index.py +0 -0
  42. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/ion_mobility.py +0 -0
  43. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/irc.py +0 -0
  44. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/macropka.py +0 -0
  45. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/multistage_opt.py +0 -0
  46. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/nmr.py +0 -0
  47. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/optimization.py +0 -0
  48. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/pdb_download.py +0 -0
  49. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/phenol_pka.py +0 -0
  50. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/pka.py +0 -0
  51. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/pose_analysis_md.py +0 -0
  52. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/protein_cofolding.py +0 -0
  53. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/redox_potential.py +0 -0
  54. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/scan.py +0 -0
  55. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/strain.py +0 -0
  56. {rowan_python-2.1.12 → rowan_python-2.1.13}/examples/tautomer.py +0 -0
  57. {rowan_python-2.1.12 → rowan_python-2.1.13}/mkdocs.yml +0 -0
  58. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/__init__.py +0 -0
  59. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/constants.py +0 -0
  60. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/folder.py +0 -0
  61. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/project.py +0 -0
  62. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/protein.py +0 -0
  63. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/py.typed +0 -0
  64. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/rowan_rdkit/__init__.py +0 -0
  65. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/rowan_rdkit/chem_utils.py +0 -0
  66. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/user.py +0 -0
  67. {rowan_python-2.1.12 → rowan_python-2.1.13}/rowan/utils.py +0 -0
  68. {rowan_python-2.1.12 → rowan_python-2.1.13}/tests/test_macropka_loop.py +0 -0
@@ -3,6 +3,7 @@ name: Build & Deploy Rowan Python Docs
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  on:
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  release:
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  types: [published]
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+ workflow_dispatch:
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  permissions:
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  contents: read
@@ -16,7 +17,7 @@ jobs:
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  uses: actions/checkout@v4
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  with:
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  fetch-depth: 0
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- ref: main
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+ ref: master
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  - name: Install Pixi
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  uses: prefix-dev/setup-pixi@v0.9.1
@@ -39,4 +40,4 @@ jobs:
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  - name: Deploy with rsync
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  run: |
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  rsync -avz --delete ./ \
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- ${{ secrets.DOCS_USERNAME }}@${{ secrets.DOCS_IP }}:{{ secrets.DOCS_TARGET_DIR }}
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+ ${{ secrets.DOCS_USERNAME }}@${{ secrets.DOCS_IP }}:${{ secrets.DOCS_TARGET_DIR }}
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: rowan-python
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- Version: 2.1.12
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+ Version: 2.1.13
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  Summary: Rowan Python Library
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  Project-URL: Homepage, https://github.com/rowansci/rowan-client
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  Project-URL: Bug Tracker, https://github.com/rowansci/rowan-client/issues
@@ -11,7 +11,7 @@ Requires-Dist: httpx
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  Requires-Dist: nest-asyncio
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  Requires-Dist: rdkit
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  Requires-Dist: setuptools
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- Requires-Dist: stjames>=0.0.137
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+ Requires-Dist: stjames>=0.0.144
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  Description-Content-Type: text/markdown
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  # Rowan Python Library
@@ -0,0 +1,25 @@
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+ from rdkit import Chem
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+
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+ import rowan
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+
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+ smiles = "CC1=C(N=CN1)CSCCNC(=NC)NC#N"
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+
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+ gnn_mtl_result = rowan.submit_membrane_permeability_workflow(
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+ smiles,
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+ name="GNN=MTL permeability",
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+ )
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+
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+ pypermm_result = rowan.submit_membrane_permeability_workflow(
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+ Chem.MolFromSmiles(smiles),
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+ method="pypermm",
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+ name="Oseltamivir Membrane Permeability (PyPermm)",
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+ )
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+
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+ gnn_mtl_result.wait_for_result().fetch_latest(in_place=True)
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+ pypermm_result.wait_for_result().fetch_latest(in_place=True)
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+
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+ print(f"Caco-2 Papp (GNN-MTL): {gnn_mtl_result.data['caco_2_P_app']}")
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+ print(f"Caco-2 P0 (PyPermm): {pypermm_result.data['caco_2_logP']}")
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+ print("View these workflows privately:")
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+ print(f"\thttps://labs.rowansci.com/workflow/{gnn_mtl_result.uuid}")
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+ print(f"\thttps://labs.rowansci.com/workflow/{pypermm_result.uuid}")