PyPI - rowan-python - Versions diffs - 2.1.0__tar.gz → 2.1.2__tar.gz - Mend

rowan-python 2.1.0tar.gz → 2.1.2tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (44) hide show

{rowan_python-2.1.0 → rowan_python-2.1.2}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rowan-python
-Version: 2.1.0
+Version: 2.1.2
 Summary: Rowan Python Library
 Project-URL: Homepage, https://github.com/rowansci/rowan-client
 Project-URL: Bug Tracker, https://github.com/rowansci/rowan-client/issues

{rowan_python-2.1.0 → rowan_python-2.1.2}/docs/index.md RENAMED Viewed

@@ -38,6 +38,16 @@
       members_order: source        # show items in the order they appear in code
       group_by_category: true      # adds “Classes”, “Functions”, … headings -->
+## Project Class and Functions
+::: rowan.project
+    handler: python
+    options:
+      show_source: false
+      show_root_heading: false
+      show_root_toc_entry: false
+      members_order: source        # show items in the order they appear in code
+      group_by_category: true      # adds “Classes”, “Functions”, … headings -->
 ## Utilities
 ::: rowan.utils
     handler: python

{rowan_python-2.1.0 → rowan_python-2.1.2}/pixi.lock RENAMED Viewed

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-- pypi: https://files.pythonhosted.org/packages/3b/dd/a24ee3de56954bfafb6ede7cd63c2413bb842cc48eb45e41c43a05a33074/mkdocstrings_python-1.16.12-py3-none-any.whl
+- pypi: https://files.pythonhosted.org/packages/5d/96/7ecc71bb9f01ee20f201b2531960b401159c6730aec90ec76a1b74bc81e1/mkdocstrings_python-1.18.0-py3-none-any.whl
   name: mkdocstrings-python
-  version: 1.16.12
-  sha256: 22ded3a63b3d823d57457a70ff9860d5a4de9e8b1e482876fc9baabaf6f5f374
+  version: 1.18.0
+  sha256: f5056d8afe9a9683ad0c59001df1ecd9668b51c19b9a6b4dc0ff02cc9b76265a
   requires_dist:
-  - mkdocstrings>=0.28.3
+  - mkdocstrings>=0.30
   - mkdocs-autorefs>=1.4
-  - griffe>=1.6.2
+  - griffe>=1.13
   - typing-extensions>=4.0 ; python_full_version < '3.11'
   requires_python: '>=3.9'
 - pypi: https://files.pythonhosted.org/packages/2b/9f/7ba6f94fc1e9ac3d2b853fdff3035fb2fa5afbed898c4a72b8a020610594/more_itertools-10.7.0-py3-none-any.whl
@@ -1141,16 +1128,16 @@ packages:
   - pytest ; extra == 'dev'
   - tox ; extra == 'dev'
   - black ; extra == 'lint'
-- pypi: https://files.pythonhosted.org/packages/c6/ac/dac4a63f978e4dcb3c6d3a78c4d8e0192a113d288502a1216950c41b1027/parso-0.8.4-py2.py3-none-any.whl
+- pypi: https://files.pythonhosted.org/packages/16/32/f8e3c85d1d5250232a5d3477a2a28cc291968ff175caeadaf3cc19ce0e4a/parso-0.8.5-py2.py3-none-any.whl
   name: parso
-  version: 0.8.4
-  sha256: a418670a20291dacd2dddc80c377c5c3791378ee1e8d12bffc35420643d43f18
+  version: 0.8.5
+  sha256: 646204b5ee239c396d040b90f9e272e9a8017c630092bf59980beb62fd033887
   requires_dist:
+  - pytest ; extra == 'testing'
+  - docopt ; extra == 'testing'
   - flake8==5.0.4 ; extra == 'qa'
   - mypy==0.971 ; extra == 'qa'
   - types-setuptools==67.2.0.1 ; extra == 'qa'
-  - docopt ; extra == 'testing'
-  - pytest ; extra == 'testing'
   requires_python: '>=3.6'
 - pypi: https://files.pythonhosted.org/packages/cc/20/ff623b09d963f88bfde16306a54e12ee5ea43e9b597108672ff3a408aad6/pathspec-0.12.1-py3-none-any.whl
   name: pathspec
@@ -1223,10 +1210,10 @@ packages:
   - typing-extensions ; python_full_version < '3.10' and extra == 'typing'
   - defusedxml ; extra == 'xmp'
   requires_python: '>=3.9'
-- pypi: https://files.pythonhosted.org/packages/fe/39/979e8e21520d4e47a0bbe349e2713c0aac6f3d853d0e5b34d76206c439aa/platformdirs-4.3.8-py3-none-any.whl
+- pypi: https://files.pythonhosted.org/packages/40/4b/2028861e724d3bd36227adfa20d3fd24c3fc6d52032f4a93c133be5d17ce/platformdirs-4.4.0-py3-none-any.whl
   name: platformdirs
-  version: 4.3.8
-  sha256: ff7059bb7eb1179e2685604f4aaf157cfd9535242bd23742eadc3c13542139b4
+  version: 4.4.0
+  sha256: abd01743f24e5287cd7a5db3752faf1a2d65353f38ec26d98e25a6db65958c85
   requires_dist:
   - furo>=2024.8.6 ; extra == 'docs'
   - proselint>=0.14 ; extra == 'docs'
@@ -1480,10 +1467,10 @@ packages:
   purls: []
   size: 252359
   timestamp: 1740379663071
-- pypi: https://files.pythonhosted.org/packages/7c/e4/56027c4a6b4ae70ca9de302488c5ca95ad4a39e190093d6c1a8ace08341b/requests-2.32.4-py3-none-any.whl
+- pypi: https://files.pythonhosted.org/packages/1e/db/4254e3eabe8020b458f1a747140d32277ec7a271daf1d235b70dc0b4e6e3/requests-2.32.5-py3-none-any.whl
   name: requests
-  version: 2.32.4
-  sha256: 27babd3cda2a6d50b30443204ee89830707d396671944c998b5975b031ac2b2c
+  version: 2.32.5
+  sha256: 2462f94637a34fd532264295e186976db0f5d453d1cdd31473c85a6a161affb6
   requires_dist:
   - charset-normalizer>=2,<4
   - idna>=2.5,<4
@@ -1491,11 +1478,11 @@ packages:
   - certifi>=2017.4.17
   - pysocks>=1.5.6,!=1.5.7 ; extra == 'socks'
   - chardet>=3.0.2,<6 ; extra == 'use-chardet-on-py3'
-  requires_python: '>=3.8'
+  requires_python: '>=3.9'
 - pypi: ./
   name: rowan-python
-  version: 2.1.0
-  sha256: c8838a78320174b0b9f997ab09b77e7c3b08a6f64e39f1aaad16c22921535ee6
+  version: 2.1.2
+  sha256: de8a1541322c4b6721fe37f8aa52b2a8679f35670d2728089d7eee93eca9b396
   requires_dist:
   - httpx
   - stjames>=0.0.83
@@ -1504,15 +1491,15 @@ packages:
   - nest-asyncio
   requires_python: '>=3.9'
   editable: true
-- pypi: https://files.pythonhosted.org/packages/99/9d/e91f84dfe3866fa648c10512904991ecc326fd0b66578b324ee6ecb8f725/ruff-0.12.8-py3-none-macosx_11_0_arm64.whl
+- pypi: https://files.pythonhosted.org/packages/c0/1d/b4207ec35e7babaee62c462769e77457e26eb853fbdc877af29417033333/ruff-0.12.10-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
   name: ruff
-  version: 0.12.8
-  sha256: 2fae54e752a3150f7ee0e09bce2e133caf10ce9d971510a9b925392dc98d2fec
+  version: 0.12.10
+  sha256: 1f68433c4fbc63efbfa3ba5db31727db229fa4e61000f452c540474b03de52a9
   requires_python: '>=3.7'
-- pypi: https://files.pythonhosted.org/packages/e8/67/0c3c9179a3ad19791ef1b8f7138aa27d4578c78700551c60d9260b2c660d/ruff-0.12.8-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+- pypi: https://files.pythonhosted.org/packages/d7/f1/97f509b4108d7bae16c48389f54f005b62ce86712120fd8b2d8e88a7cb49/ruff-0.12.10-py3-none-macosx_11_0_arm64.whl
   name: ruff
-  version: 0.12.8
-  sha256: 560e0cd641e45591a3e42cb50ef61ce07162b9c233786663fdce2d8557d99818
+  version: 0.12.10
+  sha256: d59e58586829f8e4a9920788f6efba97a13d1fa320b047814e8afede381c6839
   requires_python: '>=3.7'
 - pypi: https://files.pythonhosted.org/packages/a3/dc/17031897dae0efacfea57dfd3a82fdd2a2aeb58e0ff71b77b87e44edc772/setuptools-80.9.0-py3-none-any.whl
   name: setuptools
@@ -1594,10 +1581,10 @@ packages:
   - pygments ; extra == 'tests'
   - littleutils ; extra == 'tests'
   - cython ; extra == 'tests'
-- pypi: https://files.pythonhosted.org/packages/5b/90/184bc0c808dc643dfd35bd6cca3c7cf0e23cc8a8982fa93fdd9d5d5e7710/stjames-0.0.99-py3-none-any.whl
+- pypi: https://files.pythonhosted.org/packages/ed/96/f3b274b32a711fad65f317731411a6fefc65c6d738926dc9d1e607bddb81/stjames-0.0.102-py3-none-any.whl
   name: stjames
-  version: 0.0.99
-  sha256: 28019a6dd4e4dab576aae7b5eb0b6477539ce79a8e22b02f11af2b1b91c32c4a
+  version: 0.0.102
+  sha256: 234b3e9680d1eaaf613cb8cc9f2084f8fe4920d0ac566e1e503c9e8d4ff73a4e
   requires_dist:
   - pydantic>=2.4
   - numpy
@@ -1643,10 +1630,10 @@ packages:
   - pytest-mypy-testing ; extra == 'test'
   - pytest>=7.0,<8.2 ; extra == 'test'
   requires_python: '>=3.8'
-- pypi: https://files.pythonhosted.org/packages/b5/00/d631e67a838026495268c2f6884f3711a15a9a2a96cd244fdaea53b823fb/typing_extensions-4.14.1-py3-none-any.whl
+- pypi: https://files.pythonhosted.org/packages/18/67/36e9267722cc04a6b9f15c7f3441c2363321a3ea07da7ae0c0707beb2a9c/typing_extensions-4.15.0-py3-none-any.whl
   name: typing-extensions
-  version: 4.14.1
-  sha256: d1e1e3b58374dc93031d6eda2420a48ea44a36c2b4766a4fdeb3710755731d76
+  version: 4.15.0
+  sha256: f0fa19c6845758ab08074a0cfa8b7aecb71c999ca73d62883bc25cc018c4e548
   requires_python: '>=3.9'
 - pypi: https://files.pythonhosted.org/packages/17/69/cd203477f944c353c31bade965f880aa1061fd6bf05ded0726ca845b6ff7/typing_inspection-0.4.1-py3-none-any.whl
   name: typing-inspection

{rowan_python-2.1.0 → rowan_python-2.1.2}/pyproject.toml RENAMED Viewed

@@ -1,6 +1,6 @@
 [project]
 name = "rowan-python"
-version = "2.1.0"
+version = "2.1.2"
 description = "Rowan Python Library"
 readme = "README.md"
 requires-python = ">=3.9"

{rowan_python-2.1.0 → rowan_python-2.1.2}/rowan/protein.py RENAMED Viewed

@@ -162,7 +162,7 @@ def list_proteins(
     return [Protein(**item) for item in results]
-def upload_protein(name: str, file_path: Path) -> Protein:
+def upload_protein(name: str, file_path: Path, project_uuid: str | None = None) -> Protein:
     """
     Uploads a protein from a PDB file to the API.
@@ -181,7 +181,11 @@ def upload_protein(name: str, file_path: Path) -> Protein:
         protein_data = conversion_response.json()
         # Step 2: Use the converted data to create the final protein object.
-        creation_payload = {"name": name, "protein_data": protein_data, "ancestor_uuid": None}
+        creation_payload = {
+            "name": name,
+            "protein_data": protein_data,
+            "project_uuid": project_uuid,
+        }
         final_response = client.post("/protein", json=creation_payload)
         final_response.raise_for_status()
@@ -189,7 +193,7 @@ def upload_protein(name: str, file_path: Path) -> Protein:
         return Protein(**final_response.json())
-def create_protein_from_pdb_id(name: str, code: str, project_uuid: str) -> Protein:
+def create_protein_from_pdb_id(name: str, code: str, project_uuid: str | None = None) -> Protein:
     """
     Creates a protein from a PDB ID.