roms-tools 1.4.0__tar.gz → 1.4.2__tar.gz

roms_tools-1.4.2/.github/workflows/pre-commit.yaml

@@ -0,0 +1,18 @@
+name: pre-commit
+
+on:
+  pull_request:
+  push:
+    branches: [main]
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: actions/setup-python@v4
+    - name: Install specific pre-commit version
+      run: pip install pre-commit==3.8.0
+    - uses: pre-commit/action@v3.0.1
+      with:
+        extra_args: --all-files

roms_tools-1.4.2/.github/workflows/sphinx.yaml

@@ -0,0 +1,30 @@
+
+name: Build Documentation
+on:
+  pull_request:
+    branches:
+      - "*"
+
+jobs:
+  docs:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Create conda environment
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          cache-downloads: true
+          cache-environment: true
+          micromamba-version: 'latest'
+          environment-file: docs/environment.yml
+      - name: Conda info
+        run: conda info
+      - name: Install roms-tools
+        shell: micromamba-shell {0}
+        run: |
+           python - V
+           python -m pip install -e . --force-reinstall
+      - name: Build Docs
+        shell: bash -l {0}
+        run: |
+          cd docs ; make fresh; make html

roms_tools-1.4.2/.pre-commit-config.yaml

@@ -0,0 +1,48 @@
+default_stages: [commit, push]
+ci:
+  autoupdate_schedule: monthly
+
+exclude: roms_tools/tests/test_setup/test_data/
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-docstring-first
+      - id: check-json
+      - id: check-yaml
+#      - id: double-quote-string-fixer  # seems to argue with black-jupyter
+      - id: debug-statements
+      - id: mixed-line-ending
+
+  - repo: https://github.com/MarcoGorelli/absolufy-imports
+    rev: v0.3.1
+    hooks:
+      - id: absolufy-imports
+        name: absolufy-imports
+        files: ^roms_tools/
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: 'v0.1.4'
+    hooks:
+      - id: ruff
+        args: ["--fix"]
+
+  - repo: https://github.com/psf/black
+    rev: 22.8.0
+    hooks:
+      - id: black-jupyter
+
+  - repo: https://github.com/keewis/blackdoc
+    rev: v0.3.6
+    hooks:
+      - id: blackdoc
+
+  - repo: https://github.com/PyCQA/docformatter
+    rev: v1.7.5
+    hooks:
+      - id: docformatter
+        args: ["--in-place", "--recursive", "--wrap-summaries=88", "--wrap-descriptions=88"]

roms_tools-1.4.2/.readthedocs.yaml

@@ -0,0 +1,25 @@
+# .readthedocs.yaml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the OS, Python version and other tools you might need
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "mambaforge-22.9"
+
+# Build documentation in the "docs/" directory with Sphinx
+sphinx:
+   configuration: docs/conf.py
+
+conda:
+    environment: docs/environment.yml
+
+# Python dependencies and install method
+python:
+  install:
+    - method: pip
+      path: .

roms_tools-1.4.2/LICENSE

@@ -0,0 +1,201 @@
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roms_tools-1.4.2/PKG-INFO

@@ -0,0 +1,123 @@
+Metadata-Version: 2.1
+Name: roms-tools
+Version: 1.4.2
+Summary: Tools for running and analysing UCLA-ROMS simulations
+Author-email: Nora Loose <nora.loose@gmail.com>, Thomas Nicholas <tom@cworthy.org>
+License: Apache-2
+Project-URL: Home, https://github.com/CWorthy-ocean/roms-tools
+Project-URL: Documentation, https://roms-tools.readthedocs.io/en/latest/
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: xarray>=2022.6.0
+Requires-Dist: numpy
+Requires-Dist: pooch
+Requires-Dist: matplotlib
+Requires-Dist: cartopy
+Requires-Dist: packaging
+Requires-Dist: scipy
+Requires-Dist: gcm_filters
+Requires-Dist: netcdf4
+Requires-Dist: PyYAML
+Requires-Dist: pyamg
+Requires-Dist: bottleneck
+Provides-Extra: dask
+Requires-Dist: dask; extra == "dask"
+
+# ROMS-Tools
+[![PyPI version](https://img.shields.io/pypi/v/roms-tools.svg)](https://pypi.org/project/roms-tools/)
+[![codecov](https://codecov.io/gh/CWorthy-ocean/roms-tools/graph/badge.svg?token=5S1oNu39xE)](https://codecov.io/gh/CWorthy-ocean/roms-tools)
+[![Documentation Status](https://readthedocs.org/projects/roms-tools/badge/?version=latest)](https://roms-tools.readthedocs.io/en/latest/?badge=latest)
+![Run Tests](https://github.com/CWorthy-ocean/roms-tools/actions/workflows/tests.yaml/badge.svg)
+![Supported Python Versions](https://img.shields.io/pypi/pyversions/roms-tools)
+
+
+## Overview
+
+A suite of python tools for setting up a [ROMS](https://github.com/CESR-lab/ucla-roms) simulation.
+
+<mark>**DISCLAIMER**: This project is **ALPHA** and will be **EXPERIMENTAL** at least throughout Fall 2024. We do not recommend to use this software before this ALPHA development and test phase is completed.</mark>
+
+## Installation instructions
+
+### Installation from pip
+
+```bash
+pip install roms-tools
+```
+
+If you want to use `ROMS-Tools` together with dask (which we recommend), you can
+install `ROMS-Tools` along with the additional dependency via:
+
+```bash
+pip install roms-tools[dask]
+```
+
+### Installation from GitHub
+
+To obtain the latest development version, first clone the source repository:
+
+```bash
+git clone https://github.com/CWorthy-ocean/roms-tools.git
+cd roms-tools
+```
+
+Next, install and activate the following conda environment:
+
+```bash
+conda env create -f ci/environment.yml
+conda activate romstools
+```
+
+Finally, install `ROMS-Tools` in the same environment:
+
+```bash
+pip install -e .
+```
+
+If you want to use `ROMS-Tools` together with dask (which we recommend), you can
+install `ROMS-Tools` along with the additional dependency via:
+
+```bash
+pip install -e .[dask]
+```
+
+
+### Run the tests
+
+Before running the tests, you can activate the conda environment created in the previous section:
+
+```bash
+conda activate romstools
+```
+
+Check the installation of `ROMS-Tools` has worked by running the test suite
+```bash
+cd roms-tools
+pytest
+```
+
+## Getting Started
+
+To learn how to use `ROMS-Tools`, check out the [documentation](https://roms-tools.readthedocs.io/en/latest/).
+
+## Feedback and contributions
+
+**If you find a bug, have a feature suggestion, or any other kind of feedback, please start a Discussion.**
+
+We also accept contributions in the form of Pull Requests.
+
+
+## See also
+
+- [ROMS source code](https://github.com/CESR-lab/ucla-roms)
+- [C-Star](https://github.com/CWorthy-ocean/C-Star)

roms_tools-1.4.2/README.md

@@ -0,0 +1,88 @@
+# ROMS-Tools
+[![PyPI version](https://img.shields.io/pypi/v/roms-tools.svg)](https://pypi.org/project/roms-tools/)
+[![codecov](https://codecov.io/gh/CWorthy-ocean/roms-tools/graph/badge.svg?token=5S1oNu39xE)](https://codecov.io/gh/CWorthy-ocean/roms-tools)
+[![Documentation Status](https://readthedocs.org/projects/roms-tools/badge/?version=latest)](https://roms-tools.readthedocs.io/en/latest/?badge=latest)
+![Run Tests](https://github.com/CWorthy-ocean/roms-tools/actions/workflows/tests.yaml/badge.svg)
+![Supported Python Versions](https://img.shields.io/pypi/pyversions/roms-tools)
+
+
+## Overview
+
+A suite of python tools for setting up a [ROMS](https://github.com/CESR-lab/ucla-roms) simulation.
+
+<mark>**DISCLAIMER**: This project is **ALPHA** and will be **EXPERIMENTAL** at least throughout Fall 2024. We do not recommend to use this software before this ALPHA development and test phase is completed.</mark>
+
+## Installation instructions
+
+### Installation from pip
+
+```bash
+pip install roms-tools
+```
+
+If you want to use `ROMS-Tools` together with dask (which we recommend), you can
+install `ROMS-Tools` along with the additional dependency via:
+
+```bash
+pip install roms-tools[dask]
+```
+
+### Installation from GitHub
+
+To obtain the latest development version, first clone the source repository:
+
+```bash
+git clone https://github.com/CWorthy-ocean/roms-tools.git
+cd roms-tools
+```
+
+Next, install and activate the following conda environment:
+
+```bash
+conda env create -f ci/environment.yml
+conda activate romstools
+```
+
+Finally, install `ROMS-Tools` in the same environment:
+
+```bash
+pip install -e .
+```
+
+If you want to use `ROMS-Tools` together with dask (which we recommend), you can
+install `ROMS-Tools` along with the additional dependency via:
+
+```bash
+pip install -e .[dask]
+```
+
+
+### Run the tests
+
+Before running the tests, you can activate the conda environment created in the previous section:
+
+```bash
+conda activate romstools
+```
+
+Check the installation of `ROMS-Tools` has worked by running the test suite
+```bash
+cd roms-tools
+pytest
+```
+
+## Getting Started
+
+To learn how to use `ROMS-Tools`, check out the [documentation](https://roms-tools.readthedocs.io/en/latest/).
+
+## Feedback and contributions
+
+**If you find a bug, have a feature suggestion, or any other kind of feedback, please start a Discussion.**
+
+We also accept contributions in the form of Pull Requests.
+
+
+## See also
+
+- [ROMS source code](https://github.com/CESR-lab/ucla-roms)
+- [C-Star](https://github.com/CWorthy-ocean/C-Star)

roms_tools-1.4.2/ci/environment.yml

@@ -0,0 +1,14 @@
+name: romstools-test
+channels:
+  - conda-forge
+  - nodefaults
+dependencies:
+  - python>=3.10
+  # testing
+  - zarr
+  - pytest
+  - pytest-xdist
+  - flake8
+  - black
+  - pre-commit
+  - coverage