roifile 2024.9.15__tar.gz → 2025.5.10__tar.gz

{roifile-2024.9.15 → roifile-2025.5.10}/CHANGES.rst

@@ -1,6 +1,14 @@
 Revisions
 ---------
 
+2025.5.10
+
+- Support Python 3.14.
+
+2025.2.20
+
+- Drop support for Python 3.9.
+
 2024.9.15
 
 - Improve typing.

{roifile-2024.9.15 → roifile-2025.5.10}/LICENSE

@@ -1,6 +1,6 @@
-BSD 3-Clause License
+BSD-3-Clause license
 
-Copyright (c) 2020-2024, Christoph Gohlke
+Copyright (c) 2020-2025, Christoph Gohlke
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

{roifile-2024.9.15 → roifile-2025.5.10}/MANIFEST.in

@@ -1,6 +1,7 @@
 include LICENSE
 include README.rst
 include CHANGES.rst
+include pyproject.toml
 include roifile_demo.py
 
 include roifile/py.typed

{roifile-2024.9.15/roifile.egg-info → roifile-2025.5.10}/PKG-INFO

@@ -1,16 +1,15 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: roifile
-Version: 2024.9.15
+Version: 2025.5.10
 Summary: Read and write ImageJ ROI format
 Home-page: https://www.cgohlke.com
 Author: Christoph Gohlke
 Author-email: cgohlke@cgohlke.com
-License: BSD
+License: BSD-3-Clause
 Project-URL: Bug Tracker, https://github.com/cgohlke/roifile/issues
 Project-URL: Source Code, https://github.com/cgohlke/roifile
 Platform: any
 Classifier: Development Status :: 4 - Beta
-Classifier: License :: OSI Approved :: BSD License
 Classifier: Intended Audience :: Science/Research
 Classifier: Intended Audience :: Developers
 Classifier: Operating System :: OS Independent
@@ -19,13 +18,28 @@ Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
-Requires-Python: >=3.9
+Classifier: Programming Language :: Python :: 3.14
+Requires-Python: >=3.10
 Description-Content-Type: text/x-rst
 License-File: LICENSE
 Requires-Dist: numpy
 Provides-Extra: all
 Requires-Dist: matplotlib; extra == "all"
 Requires-Dist: tifffile; extra == "all"
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license
+Dynamic: license-file
+Dynamic: platform
+Dynamic: project-url
+Dynamic: provides-extra
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
 
 Read and write ImageJ ROI format
 ================================
@@ -37,8 +51,8 @@ interest, geometric shapes, paths, text, and whatnot for image overlays.
 .. _ImageJ: https://imagej.net
 
 :Author: `Christoph Gohlke <https://www.cgohlke.com>`_
-:License: BSD 3-Clause
-:Version: 2024.9.15
+:License: BSD-3-Clause
+:Version: 2025.5.10
 :DOI: `10.5281/zenodo.6941603 <https://doi.org/10.5281/zenodo.6941603>`_
 
 Quickstart
@@ -64,14 +78,22 @@ Requirements
 This revision was tested with the following requirements and dependencies
 (other versions may work):
 
-- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.5, 3.13.0rc2
-- `Numpy <https://pypi.org/project/numpy/>`_ 2.2.1
-- `Tifffile <https://pypi.org/project/tifffile/>`_ 2024.8.30 (optional)
-- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.9.2 (optional)
+- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.10, 3.13.3 64-bit
+- `NumPy <https://pypi.org/project/numpy/>`_ 2.2.5
+- `Tifffile <https://pypi.org/project/tifffile/>`_ 2025.5.10 (optional)
+- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.10.3 (optional)
 
 Revisions
 ---------
 
+2025.5.10
+
+- Support Python 3.14.
+
+2025.2.20
+
+- Drop support for Python 3.9.
+
 2024.9.15
 
 - Improve typing.
@@ -182,6 +204,7 @@ Read the ROIs from the ZIP file:
 
 Write the ROIs to an ImageJ formatted TIFF file:
 
+>>> import numpy
 >>> import tifffile
 >>> tifffile.imwrite(
 ...     '_test.tif',

{roifile-2024.9.15 → roifile-2025.5.10}/README.rst

@@ -11,8 +11,8 @@ interest, geometric shapes, paths, text, and whatnot for image overlays.
 .. _ImageJ: https://imagej.net
 
 :Author: `Christoph Gohlke <https://www.cgohlke.com>`_
-:License: BSD 3-Clause
-:Version: 2024.9.15
+:License: BSD-3-Clause
+:Version: 2025.5.10
 :DOI: `10.5281/zenodo.6941603 <https://doi.org/10.5281/zenodo.6941603>`_
 
 Quickstart
@@ -38,14 +38,22 @@ Requirements
 This revision was tested with the following requirements and dependencies
 (other versions may work):
 
-- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.5, 3.13.0rc2
-- `Numpy <https://pypi.org/project/numpy/>`_ 2.2.1
-- `Tifffile <https://pypi.org/project/tifffile/>`_ 2024.8.30 (optional)
-- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.9.2 (optional)
+- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.10, 3.13.3 64-bit
+- `NumPy <https://pypi.org/project/numpy/>`_ 2.2.5
+- `Tifffile <https://pypi.org/project/tifffile/>`_ 2025.5.10 (optional)
+- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.10.3 (optional)
 
 Revisions
 ---------
 
+2025.5.10
+
+- Support Python 3.14.
+
+2025.2.20
+
+- Drop support for Python 3.9.
+
 2024.9.15
 
 - Improve typing.
@@ -170,6 +178,7 @@ Write the ROIs to an ImageJ formatted TIFF file:
 
 .. code-block:: python
 
+    >>> import numpy
     >>> import tifffile
     >>> tifffile.imwrite(
     ...     '_test.tif',

roifile-2025.5.10/pyproject.toml

@@ -0,0 +1,3 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"

roifile-2025.5.10/roifile/__init__.py

@@ -0,0 +1,17 @@
+# roifile/__init__.py
+
+from .roifile import *
+from .roifile import __all__, __doc__, __version__
+
+
+def _set_module() -> None:
+    """Set __module__ attribute for all public objects."""
+    globs = globals()
+    module = globs['__name__']
+    for item in __all__:
+        obj = globs[item]
+        if hasattr(obj, '__module__'):
+            obj.__module__ = module
+
+
+_set_module()

{roifile-2024.9.15 → roifile-2025.5.10}/roifile/roifile.py

@@ -1,6 +1,6 @@
 # roifile.py
 
-# Copyright (c) 2020-2024, Christoph Gohlke
+# Copyright (c) 2020-2025, Christoph Gohlke
 # All rights reserved.
 #
 # Redistribution and use in source and binary forms, with or without
@@ -38,8 +38,8 @@ interest, geometric shapes, paths, text, and whatnot for image overlays.
 .. _ImageJ: https://imagej.net
 
 :Author: `Christoph Gohlke <https://www.cgohlke.com>`_
-:License: BSD 3-Clause
-:Version: 2024.9.15
+:License: BSD-3-Clause
+:Version: 2025.5.10
 :DOI: `10.5281/zenodo.6941603 <https://doi.org/10.5281/zenodo.6941603>`_
 
 Quickstart
@@ -65,14 +65,22 @@ Requirements
 This revision was tested with the following requirements and dependencies
 (other versions may work):
 
-- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.5, 3.13.0rc2
-- `Numpy <https://pypi.org/project/numpy/>`_ 2.2.1
-- `Tifffile <https://pypi.org/project/tifffile/>`_ 2024.8.30 (optional)
-- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.9.2 (optional)
+- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.10, 3.13.3 64-bit
+- `NumPy <https://pypi.org/project/numpy/>`_ 2.2.5
+- `Tifffile <https://pypi.org/project/tifffile/>`_ 2025.5.10 (optional)
+- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.10.3 (optional)
 
 Revisions
 ---------
 
+2025.5.10
+
+- Support Python 3.14.
+
+2025.2.20
+
+- Drop support for Python 3.9.
+
 2024.9.15
 
 - Improve typing.
@@ -183,6 +191,7 @@ Read the ROIs from the ZIP file:
 
 Write the ROIs to an ImageJ formatted TIFF file:
 
+>>> import numpy
 >>> import tifffile
 >>> tifffile.imwrite(
 ...     '_test.tif',
@@ -206,9 +215,10 @@ For an advanced example, see `roifile_demo.py` in the source distribution.
 
 from __future__ import annotations
 
-__version__ = '2024.9.15'
+__version__ = '2025.5.10'
 
 __all__ = [
+    '__version__',
     'roiread',
     'roiwrite',
     'ImagejRoi',
@@ -232,8 +242,8 @@ from typing import TYPE_CHECKING
 import numpy
 
 if TYPE_CHECKING:
-    from collections.abc import Iterable
-    from typing import Any, Iterator, Literal
+    from collections.abc import Iterable, Iterator
+    from typing import Any, Literal
 
     from matplotlib.axes import Axes
     from numpy.typing import ArrayLike, NDArray
@@ -286,6 +296,7 @@ def roiwrite(
 
     import zipfile
 
+    assert mode is not None
     with zipfile.ZipFile(filename, mode) as zf:
         for r in roi:
             if name is None:
@@ -750,6 +761,7 @@ class ImagejRoi:
                 mode = 'a' if os.path.exists(filename) else 'w'
             import zipfile
 
+            assert mode is not None
             with zipfile.ZipFile(filename, mode) as zf:
                 with zf.open(name, 'w') as fh:
                     fh.write(self.tobytes())
@@ -1096,9 +1108,11 @@ class ImagejRoi:
         multi_coordinates: NDArray[numpy.float32], /
     ) -> list[NDArray[numpy.float32]]:
         """Return list of coordinate arrays from 2D geometric path."""
-        coordinates = []
+        coordinates: list[NDArray[numpy.float32]] = []
         points: list[list[float]] = []
-        path: list[float] = multi_coordinates.tolist()
+        path: list[float] = []
+
+        path = multi_coordinates.tolist()  # type: ignore[assignment]
         n = 0
         m = 0
         while n < len(path):
@@ -1302,8 +1316,8 @@ def enumstr(v: enum.Enum | None, /) -> str:
 
 
 def logger() -> logging.Logger:
-    """Return logging.getLogger('roifile')."""
-    return logging.getLogger(__name__.replace('roifile.roifile', 'roifile'))
+    """Return logger for roifile module."""
+    return logging.getLogger('roifile')
 
 
 def test(verbose: bool = False) -> None:

{roifile-2024.9.15 → roifile-2025.5.10/roifile.egg-info}/PKG-INFO

@@ -1,16 +1,15 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: roifile
-Version: 2024.9.15
+Version: 2025.5.10
 Summary: Read and write ImageJ ROI format
 Home-page: https://www.cgohlke.com
 Author: Christoph Gohlke
 Author-email: cgohlke@cgohlke.com
-License: BSD
+License: BSD-3-Clause
 Project-URL: Bug Tracker, https://github.com/cgohlke/roifile/issues
 Project-URL: Source Code, https://github.com/cgohlke/roifile
 Platform: any
 Classifier: Development Status :: 4 - Beta
-Classifier: License :: OSI Approved :: BSD License
 Classifier: Intended Audience :: Science/Research
 Classifier: Intended Audience :: Developers
 Classifier: Operating System :: OS Independent
@@ -19,13 +18,28 @@ Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
-Requires-Python: >=3.9
+Classifier: Programming Language :: Python :: 3.14
+Requires-Python: >=3.10
 Description-Content-Type: text/x-rst
 License-File: LICENSE
 Requires-Dist: numpy
 Provides-Extra: all
 Requires-Dist: matplotlib; extra == "all"
 Requires-Dist: tifffile; extra == "all"
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license
+Dynamic: license-file
+Dynamic: platform
+Dynamic: project-url
+Dynamic: provides-extra
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
 
 Read and write ImageJ ROI format
 ================================
@@ -37,8 +51,8 @@ interest, geometric shapes, paths, text, and whatnot for image overlays.
 .. _ImageJ: https://imagej.net
 
 :Author: `Christoph Gohlke <https://www.cgohlke.com>`_
-:License: BSD 3-Clause
-:Version: 2024.9.15
+:License: BSD-3-Clause
+:Version: 2025.5.10
 :DOI: `10.5281/zenodo.6941603 <https://doi.org/10.5281/zenodo.6941603>`_
 
 Quickstart
@@ -64,14 +78,22 @@ Requirements
 This revision was tested with the following requirements and dependencies
 (other versions may work):
 
-- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.5, 3.13.0rc2
-- `Numpy <https://pypi.org/project/numpy/>`_ 2.2.1
-- `Tifffile <https://pypi.org/project/tifffile/>`_ 2024.8.30 (optional)
-- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.9.2 (optional)
+- `CPython <https://www.python.org>`_ 3.10.11, 3.11.9, 3.12.10, 3.13.3 64-bit
+- `NumPy <https://pypi.org/project/numpy/>`_ 2.2.5
+- `Tifffile <https://pypi.org/project/tifffile/>`_ 2025.5.10 (optional)
+- `Matplotlib <https://pypi.org/project/matplotlib/>`_ 3.10.3 (optional)
 
 Revisions
 ---------
 
+2025.5.10
+
+- Support Python 3.14.
+
+2025.2.20
+
+- Drop support for Python 3.9.
+
 2024.9.15
 
 - Improve typing.
@@ -182,6 +204,7 @@ Read the ROIs from the ZIP file:
 
 Write the ROIs to an ImageJ formatted TIFF file:
 
+>>> import numpy
 >>> import tifffile
 >>> tifffile.imwrite(
 ...     '_test.tif',

{roifile-2024.9.15 → roifile-2025.5.10}/roifile.egg-info/SOURCES.txt

@@ -2,6 +2,7 @@ CHANGES.rst
 LICENSE
 MANIFEST.in
 README.rst
+pyproject.toml
 roifile_demo.py
 setup.py
 roifile/__init__.py

{roifile-2024.9.15 → roifile-2025.5.10}/setup.py

@@ -8,7 +8,7 @@ import sys
 from setuptools import setup
 
 
-def search(pattern, string, flags=0):
+def search(pattern: str, string: str, flags: int = 0) -> str:
     """Return first match of pattern in string."""
     match = re.search(pattern, string, flags)
     if match is None:
@@ -16,7 +16,7 @@ def search(pattern, string, flags=0):
     return match.groups()[0]
 
 
-def fix_docstring_examples(docstring):
+def fix_docstring_examples(docstring: str) -> str:
     """Return docstring with examples fixed for GitHub."""
     start = True
     indent = False
@@ -64,7 +64,7 @@ if 'sdist' in sys.argv:
     license = license.replace('# ', '').replace('#', '')
 
     with open('LICENSE', 'w', encoding='utf-8') as fh:
-        fh.write('BSD 3-Clause License\n\n')
+        fh.write('BSD-3-Clause license\n\n')
         fh.write(license)
 
     revisions = search(
@@ -84,7 +84,7 @@ if 'sdist' in sys.argv:
 setup(
     name='roifile',
     version=version,
-    license='BSD',
+    license='BSD-3-Clause',
     description=description,
     long_description=readme,
     long_description_content_type='text/x-rst',
@@ -99,13 +99,12 @@ setup(
     packages=['roifile'],
     package_data={'roifile': ['py.typed']},
     entry_points={'console_scripts': ['roifile = roifile.roifile:main']},
-    python_requires='>=3.9',
+    python_requires='>=3.10',
     install_requires=['numpy'],
     extras_require={'all': ['matplotlib', 'tifffile']},
     platforms=['any'],
     classifiers=[
         'Development Status :: 4 - Beta',
-        'License :: OSI Approved :: BSD License',
         'Intended Audience :: Science/Research',
         'Intended Audience :: Developers',
         'Operating System :: OS Independent',
@@ -114,5 +113,6 @@ setup(
         'Programming Language :: Python :: 3.11',
         'Programming Language :: Python :: 3.12',
         'Programming Language :: Python :: 3.13',
+        'Programming Language :: Python :: 3.14',
     ],
 )

roifile-2024.9.15/roifile/__init__.py

@@ -1,4 +0,0 @@
-# roifile/__init__.py
-
-from .roifile import __doc__, __all__, __version__
-from .roifile import *