rock-physics-open 0.2.3__tar.gz → 0.3.1__tar.gz

rock_physics_open-0.3.1/.devcontainer/devcontainer.json

@@ -0,0 +1,68 @@
+// Definition for the devcontainer used by GitHub Codespaces.
+{
+  "name": "Full-stack devcontainer (Backend & Frontend)",
+  "image": "mcr.microsoft.com/devcontainers/universal:2",
+  "remoteEnv": {
+    "COMPOSE_BAKE": "true"
+  },
+  "customizations": {
+    "vscode": {
+      "settings": {
+        // Set formatter for specific filetypes and enable format on save
+        "[toml]": {
+          "editor.defaultFormatter": "tamasfe.even-better-toml",
+          "editor.formatOnSave": true
+        },
+        "[json][jsonc]": {
+          "editor.defaultFormatter": "vscode.json-language-features",
+          "editor.formatOnSave": true
+        },
+        "[dockercompose]": {
+          "editor.defaultFormatter": "ms-azuretools.vscode-containers",
+          "editor.formatOnSave": true
+        },
+        "[github-actions-workflow][github-workflow][yaml]": {
+          "editor.defaultFormatter": "redhat.vscode-yaml",
+          "editor.formatOnSave": true
+        },
+        "[python]": {
+          "editor.formatOnSave": true,
+          "editor.defaultFormatter": "charliermarsh.ruff",
+          "editor.codeActionsOnSave": {
+            "source.organizeImports": "explicit",
+            "source.fixAll": "explicit"
+          }
+        },
+        "[typescriptreact][typescript][javascript][javascriptreact][css]": {
+          "editor.formatOnSave": true,
+          "editor.defaultFormatter": "biomejs.biome",
+          "editor.codeActionsOnSave": {
+            "source.organizeImports.biome": "explicit",
+            "source.fixAll.biome": "explicit"
+          }
+        },
+        // Python specific settings
+        "notebook.formatOnSave.enabled": true,
+        "basedpyright.analysis.diagnosticMode": "openFilesOnly",
+      },
+      // Extensions that is handy to have in the devcontainer
+      "extensions": [
+        "biomejs.biome",
+        "charliermarsh.ruff",
+        "ms-python.python",
+        "ms-toolsai.jupyter",
+        "detachhead.basedpyright",
+        "tamasfe.even-better-toml",
+        "docker.docker",
+        "redhat.vscode-yaml",
+        "eamodio.gitlens",
+        "ms-azuretools.vscode-containers",
+        "streetsidesoftware.code-spell-checker",
+        "streetsidesoftware.code-spell-checker-norwegian-bokmal",
+        "streetsidesoftware.code-spell-checker-scientific-terms",
+        "github.vscode-github-actions",
+        "DavidAnson.vscode-markdownlint"
+      ]
+    }
+  }
+}

rock_physics_open-0.3.1/.github/release-please-manifest.json

@@ -0,0 +1 @@
+{".":"0.3.1"}

rock_physics_open-0.3.1/.github/workflows/lint-and-format.yaml

@@ -0,0 +1,25 @@
+name: lint-and-format
+permissions:
+  contents: read
+
+on:
+  workflow_call:
+  workflow_dispatch:
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v5
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+
+      - name: Install dependencies
+        run: uv sync --locked --all-extras --dev
+
+      - name: Run pre-commit
+        run: uv run pre-commit run --all-files

{rock_physics_open-0.2.3 → rock_physics_open-0.3.1}/.github/workflows/on-pull-request.yaml

@@ -3,6 +3,9 @@ name: on-pull-request
 on:
   pull_request:
 
+permissions:
+  contents: read
+
 jobs:
   lint-and-format:
     uses: ./.github/workflows/lint-and-format.yaml

{rock_physics_open-0.2.3 → rock_physics_open-0.3.1}/.github/workflows/on-push-main.yaml

@@ -1,5 +1,8 @@
 name: push to main branch
 
+permissions:
+  contents: read
+
 on:
   push:
     branches:
@@ -14,6 +17,10 @@ jobs:
 
   release-please:
     needs: test
+    permissions:
+      contents: write
+      issues: write
+      pull-requests: write
     uses: ./.github/workflows/release-please.yaml
 
   build:
@@ -23,12 +30,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
         with:
           fetch-depth: 0
 
       - name: Setup Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v6
         with:
           python-version: 3.11
 
@@ -51,11 +58,11 @@ jobs:
       name: pypi
       url: https://pypi.org/p/rock-physics-open
     permissions:
-      id-token: write  # required for Trusted Publishing to PyPI
+      id-token: write # required for Trusted Publishing to PyPI
 
     steps:
       - name: Download Artifact
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v5
         with:
           name: distribution
           path: dist/

rock_physics_open-0.3.1/.github/workflows/test.yaml

@@ -0,0 +1,40 @@
+name: test
+permissions:
+  contents: read
+
+on:
+  workflow_call:
+  workflow_dispatch:
+
+jobs:
+  test:
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [windows-latest, ubuntu-latest, macos-latest]
+        python-version: ["3.11", "3.12", "3.13"]
+    runs-on: ${{ matrix.os }}
+    name: ${{ matrix.os }} / ${{ matrix.python-version }}
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v5
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v6
+        with:
+          enable-cache: true
+          python-version: ${{ matrix.python-version }}
+
+      - name: Show Machine Information
+        run: uvx --from py-cpuinfo cpuinfo
+
+      - name: Install dependencies
+        run: uv sync --locked --all-extras --dev
+
+      - name: Test
+        if: ${{ matrix.os == 'windows-latest' }}
+        run: uv run pytest
+
+      - name: Test ( -m "not use_graphics" )
+        if: ${{ matrix.os != 'windows-latest' }}
+        run: uv run pytest -m "not use_graphics"

{rock_physics_open-0.2.3 → rock_physics_open-0.3.1}/.gitignore

@@ -4,7 +4,6 @@
 .venv
 venv/
 .tool-versions
-.python-version
 
 build/
 __pycache__/

rock_physics_open-0.3.1/.pre-commit-config.yaml

@@ -0,0 +1,41 @@
+default_stages: [pre-commit]
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: check-ast
+        language_version: python3.11
+      - id: debug-statements
+      - id: check-merge-conflict
+      - id: detect-private-key
+      - id: check-case-conflict
+      - id: check-toml
+      - id: check-yaml
+      - id: check-json
+        exclude: ".devcontainer|.vscode"
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+
+  - repo: local
+    hooks:
+      - id: ruff
+        name: "Python: lint"
+        entry: uv run ruff check --fix
+        language: system
+        files: .*\.py$
+        pass_filenames: false
+
+      - id: ruff-format
+        name: "Python: format"
+        entry: uv run ruff format
+        language: system
+        pass_filenames: false
+        files: .*\.py$
+
+      - id: basedpyright
+        name: "Python: static type checking"
+        entry: uv run basedpyright
+        language: system
+        pass_filenames: false
+        files: .*\.py$

rock_physics_open-0.3.1/.python-version

@@ -0,0 +1 @@
+3.11

{rock_physics_open-0.2.3 → rock_physics_open-0.3.1}/CHANGELOG.md

@@ -1,5 +1,33 @@
 # Changelog
 
+## [0.3.1](https://github.com/equinor/rock-physics-open/compare/v0.3.0...v0.3.1) (2025-10-28)
+
+
+### Bug Fixes
+
+* Add static typing to std_functions and various_utilities ([1ed5353](https://github.com/equinor/rock-physics-open/commit/1ed5353d0886e0d7625ae1e998535bd5c78b9e31))
+* catch cases with non-consistent input lengths ([7843c8e](https://github.com/equinor/rock-physics-open/commit/7843c8ed3e9d4144bbe7079d314af20c087d48be))
+* make proper reference to cell in numpy array with ndim > 0 ([0abca8f](https://github.com/equinor/rock-physics-open/commit/0abca8fcb82a5d35a990857d4ecbd2f050077b08))
+* remove redundant prototypes ([7843c8e](https://github.com/equinor/rock-physics-open/commit/7843c8ed3e9d4144bbe7079d314af20c087d48be))
+
+## [0.3.0](https://github.com/equinor/rock-physics-open/compare/v0.2.3...v0.3.0) (2025-10-21)
+
+
+### Features
+
+* add an abstract base class for all pressure sensitivity models, add models for polynomial, friable, patchy cement; add tests ([a8cfbdb](https://github.com/equinor/rock-physics-open/commit/a8cfbdb4e7d890f5199a18cf06a98c030003fbc9))
+* Add static type checking to gen_utilities ([f3c9424](https://github.com/equinor/rock-physics-open/commit/f3c94246e86810cc40e2a51682e8168ad8f0a28c))
+
+
+### Bug Fixes
+
+* enforce SI units in all fluid models, update snapshots ([c8fe5c0](https://github.com/equinor/rock-physics-open/commit/c8fe5c0f443c7821036e56153f82503a6b098642))
+* Potential fix for code scanning alert no. 3: Workflow does not contain permissions ([8f520ec](https://github.com/equinor/rock-physics-open/commit/8f520ec8fe9990c50dd0d64611022e5a7c233a3d))
+* Potential fix for code scanning alert no. 6: Workflow does not contain permissions ([55fe74e](https://github.com/equinor/rock-physics-open/commit/55fe74eedd4c38f1de54a65e7d9980f0f858e785))
+* Potential fix for code scanning alert no. 7: Workflow does not contain permissions ([09aa44f](https://github.com/equinor/rock-physics-open/commit/09aa44f936522c541269b3c0aeab7674084b745b))
+* Potential fix for code scanning alert no. 9: Workflow does not contain permissions ([d8983f4](https://github.com/equinor/rock-physics-open/commit/d8983f45542dee6c5d6f253273ee35055d44ef07))
+* revert isinstance checking ([f3c9424](https://github.com/equinor/rock-physics-open/commit/f3c94246e86810cc40e2a51682e8168ad8f0a28c))
+
 ## [0.2.3](https://github.com/equinor/rock-physics-open/compare/v0.2.2...v0.2.3) (2025-08-21)
 
 

{rock_physics_open-0.2.3/src/rock_physics_open.egg-info → rock_physics_open-0.3.1}/PKG-INFO

@@ -1,9 +1,9 @@
 Metadata-Version: 2.4
 Name: rock_physics_open
-Version: 0.2.3
+Version: 0.3.1
 Summary: Equinor Rock Physics Module
 Author-email: Harald Flesche <hfle@equinor.com>, Eivind Jahren <ejah@equinor.com>, Jimmy Zurcher <jiz@equinor.com>
-Maintainer-email: Harald Flesche <hfle@equinor.com>, Eirik Ola Aksnes <eoaksnes@equinor.com>, Christopher Collin Løkken <chcl@equinor.com>, Sivert Utne <sutn@equinor.com>, Einar Wigum Arbo <earb@equinor.com>
+Maintainer-email: Harald Flesche <hfle@equinor.com>, Eirik Ola Aksnes <eoaksnes@equinor.com>, Sivert Utne <sutn@equinor.com>, Einar Wigum Arbo <earb@equinor.com>
 Project-URL: Repository, https://github.com/equinor/rock-physics-open
 Project-URL: Homepage, https://github.com/equinor/rock-physics-open
 Project-URL: Changelog, https://github.com/equinor/rock-physics-open/blob/main/CHANGELOG.md
@@ -16,6 +16,7 @@ Classifier: Topic :: Utilities
 Classifier: Operating System :: POSIX :: Linux
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Classifier: Natural Language :: English
 Requires-Python: >=3.11
 Description-Content-Type: text/markdown
@@ -27,11 +28,6 @@ Requires-Dist: scipy<2,>=1.10.1
 Requires-Dist: scikit-learn>=1.2.2
 Requires-Dist: sympy>=1.13.3
 Requires-Dist: tmatrix>=1.0.0
-Provides-Extra: tests
-Requires-Dist: pytest>=8.3.5; extra == "tests"
-Requires-Dist: pytest-cov>=6.1.1; extra == "tests"
-Requires-Dist: ruff>=0.11.6; extra == "tests"
-Requires-Dist: pre-commit>=4.2.0; extra == "tests"
 Dynamic: license-file
 
 <div align="center">
@@ -80,7 +76,7 @@ Alternatively, you can update the dependencies in your `pyproject.toml` file:
 <!-- x-release-please-start-version -->
 ```toml
 dependencies = [
-    "rock-physics-open == 0.2.3",
+    "rock-physics-open == 0.3.1",
 ]
 ```
 <!-- x-release-please-end-version -->

{rock_physics_open-0.2.3 → rock_physics_open-0.3.1}/README.md

@@ -44,7 +44,7 @@ Alternatively, you can update the dependencies in your `pyproject.toml` file:
 <!-- x-release-please-start-version -->
 ```toml
 dependencies = [
-    "rock-physics-open == 0.2.3",
+    "rock-physics-open == 0.3.1",
 ]
 ```
 <!-- x-release-please-end-version -->

rock_physics_open-0.3.1/pyproject.toml

@@ -0,0 +1,140 @@
+[build-system]
+requires = ["setuptools >= 69.5.1", "setuptools_scm[toml] >= 7.1.0", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools_scm]
+write_to = "src/rock_physics_open/version.py"
+version_scheme = "only-version"
+local_scheme = "no-local-version"
+
+[tool.setuptools]
+include-package-data = true
+
+[tool.setuptools.packages.find]
+where = ["src"]
+
+[tool.setuptools.package-data]
+"*" = ["*.dll", "*.so", "*.ini", "*.h5", "*.pkl"]
+
+[project]
+name = "rock_physics_open"
+description = "Equinor Rock Physics Module"
+authors = [
+    { name = "Harald Flesche", email = "hfle@equinor.com" },
+    { name = "Eivind Jahren", email = "ejah@equinor.com" },
+    { name = "Jimmy Zurcher", email = "jiz@equinor.com" },
+]
+maintainers = [
+    { name = "Harald Flesche", email = "hfle@equinor.com" },
+    { name = "Eirik Ola Aksnes", email = "eoaksnes@equinor.com" },
+    { name = "Sivert Utne", email = "sutn@equinor.com" },
+    { name = "Einar Wigum Arbo", email = "earb@equinor.com" },
+]
+readme = "README.md"
+requires-python = ">=3.11"
+keywords = [
+    "energy",
+    "subsurface",
+    "seismic",
+    "rock physics",
+    "scientific",
+    "engineering",
+]
+classifiers = [
+    "Intended Audience :: Science/Research",
+    "Topic :: Scientific/Engineering",
+    "Topic :: Scientific/Engineering :: Physics",
+    "Topic :: Software Development :: Libraries",
+    "Topic :: Utilities",
+    "Operating System :: POSIX :: Linux",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Natural Language :: English",
+]
+dynamic = ["version"]
+dependencies = [
+    "numpy >= 1.26.4",
+    "pandas >= 2.0.2",
+    "matplotlib >= 3.7.1",
+    "scipy >= 1.10.1, < 2",
+    "scikit-learn >= 1.2.2",
+    "sympy >= 1.13.3",       # TODO: remove? (only used 1 place in span_wagner co2 equations)
+    "tmatrix >= 1.0.0",
+]
+
+
+[project.urls]
+Repository = "https://github.com/equinor/rock-physics-open"
+Homepage = "https://github.com/equinor/rock-physics-open"
+Changelog = "https://github.com/equinor/rock-physics-open/blob/main/CHANGELOG.md"
+
+[dependency-groups]
+dev = [
+    "basedpyright>=1.31.4",
+    "matplotlib-stubs>=0.3.3",
+    "pandas-stubs>=2.3.2.250827",
+    "pre-commit>=4.3.0",
+    "pytest>=8.4.1",
+    "pytest-cov>=6.2.1",
+    "ruff>=0.12.11",
+    "scipy-stubs>=1.16.1.1",
+]
+
+[tool.ruff]
+lint.select = [
+    "C",       # Complexity
+    "E",       # Errors
+    "F",       # Flake (unused variables etc.)
+    "I",       # Imports
+    "NPY",     # Numpy
+    "PIE",     # Python idioms and style
+    "PLR1711", # Redundant Return
+    "PT",      # PyTest
+    "Q",       # Quotes
+    "RET",     # Return statements
+    "RSE",     # Raising exceptions
+    "SIM",     # Code simplification
+    "W",       # Warnings
+]
+lint.ignore = [
+    "C901", # Complex Code (too many branches/statements)
+    "E501", # Line Too Long
+]
+line-length = 88
+
+[tool.ruff.lint.isort]
+combine-as-imports = true
+
+[tool.ruff.lint.per-file-ignores]
+"*.ipynb" = ["E402", "E501"]
+
+[tool.pytest.ini_options]
+markers = [
+    "use_graphics", # marks test as dependent on display (deselect with '-m "not use_graphics")]
+]
+addopts = ["--color=yes", "--strict-markers"]
+
+[tool.basedpyright]
+pythonVersion = "3.11"
+include = [
+    # Currently only enabling on general utilities and the corresponding tests
+    "src/rock_physics_open/equinor_utilities/gen_utilities/*.py",
+    "src/rock_physics_open/equinor_utilities/various_utilities/*.py",
+    "src/rock_physics_open/equinor_utilities/std_functions/*.py",
+    "tests/gen_utilities_tests/*.py",
+]
+exclude = ["src/**/version.py"]
+allowedUntypedLibraries = [
+    "pandas",
+    "sklearn",
+    "tkinter",
+    "sympy",
+    "matplotlib.pyplot",
+    "matplotlib",
+    "pyplot",
+    "plt",
+]
+reportAny = false
+reportExplicitAny = false
+reportMissingTypeStubs = false