robust-mixed-dist 0.1.0__tar.gz

robust_mixed_dist-0.1.0/LICENSE

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+Copyright (c) 2018 The Python Packaging Authority
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

robust_mixed_dist-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: robust-mixed-dist
+Version: 0.1.0
+Summary: For more information, check out the official documentation of `robust_mixed_dist` at: https://fabioscielzoortiz.github.io/robust_mixed_dist-docu/intro.html
+Home-page: https://github.com/FabioScielzoOrtiz/robust_mixed_dist-package
+Author: Fabio Scielzo Ortiz
+Author-email: fabio.scielzoortiz@gmail.com
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.7
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: license-file
+Dynamic: requires-python
+Dynamic: summary
+
+# robust_mixed_dist
+
+For more information, check out the official documentation of `robust_mixed_dist` at: https://fabioscielzoortiz.github.io/robust_mixed_dist-docu/intro.html
+

robust_mixed_dist-0.1.0/README.md

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+# robust_mixed_dist
+
+For more information, check out the official documentation of `robust_mixed_dist` at: https://fabioscielzoortiz.github.io/robust_mixed_dist-docu/intro.html
+

robust_mixed_dist-0.1.0/robust_mixed_dist/binary.py

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+import polars as pl
+import pandas as pd
+from scipy.spatial import distance
+from scipy.spatial.distance import pdist, squareform
+
+################################################################################
+
+def sokal_dist_matrix(X):
+    """
+    Calculates the Sokal distance matrix for a data matrix `X` using SciPy.
+
+    Parameters (inputs)
+    ----------
+    X: a pandas/polars DataFrame or a NumPy array. It represents a data matrix.
+
+    Returns (outputs)
+    -------
+    M: the Sokal distance matrix between the rows of X.
+    """
+        
+    if isinstance(X, pl.DataFrame):
+        X = X.to_numpy()
+    if isinstance(X, pd.DataFrame):
+        X = X.to_numpy()    
+
+    # Compute the pairwise distances using pdist and convert to a square form.
+    M = squareform(pdist(X, metric='sokalmichener'))
+    
+    return M
+
+################################################################################
+
+def sokal_dist(xi, xr) :
+    """
+    Calculates the Sokal distance between a pair of vectors.
+
+    Parameters (inputs)
+    ----------
+    xi, xr: a pair of quantitative vectors. They represent a couple of statistical observations.
+
+    Returns (outputs)
+    -------
+    The Sokal distance between the observations `xi` and `xr`.
+    """
+
+    if isinstance(xi, (pl.DataFrame, pd.DataFrame)) :
+        xi = xi.to_numpy().flatten()
+    elif isinstance(xi, (pd.Series, pl.Series)) :
+        xi = xi.to_numpy() 
+    if isinstance(xr, (pl.DataFrame, pd.DataFrame)) :
+        xr = xr.to_numpy().flatten()
+    elif isinstance(xr, (pd.Series, pl.Series)) :
+        xr = xr.to_numpy() 
+
+    return distance.sokalmichener(xi, xr)
+
+################################################################################
+
+def jaccard_dist_matrix(X):
+    """
+    Calculates the Jaccard distance matrix for a data matrix `X` using SciPy.
+
+    Parameters (inputs)
+    ----------
+    X: a pandas/polars DataFrame or a NumPy array. It represents a data matrix.
+
+    Returns (outputs)
+    -------
+    M: the Jaccard distance matrix between the rows of X.
+    """
+
+    if isinstance(X, pl.DataFrame):
+        X = X.to_numpy()
+    if isinstance(X, pd.DataFrame):
+        X = X.to_numpy()    
+
+    # Compute the pairwise distances using pdist and convert to a square form.
+    M = squareform(pdist(X, metric='jaccard'))
+    
+    return M
+
+################################################################################
+
+def jaccard_dist(xi, xr) :
+    """
+    Calculates the Jaccard distance between a pair of vectors.
+
+    Parameters (inputs)
+    ----------
+    xi, xr: a pair of quantitative vectors. They represent a couple of statistical observations.
+
+    Returns (outputs)
+    -------
+    The Jaccard distance between the observations `xi` and `xr`.
+    """
+
+    if isinstance(xi, (pl.DataFrame, pd.DataFrame)) :
+        xi = xi.to_numpy().flatten()
+    elif isinstance(xi, (pd.Series, pl.Series)) :
+        xi = xi.to_numpy() 
+    if isinstance(xr, (pl.DataFrame, pd.DataFrame)) :
+        xr = xr.to_numpy().flatten()
+    elif isinstance(xr, (pd.Series, pl.Series)) :
+        xr = xr.to_numpy() 
+        
+    return distance.jaccard(xi, xr)
+
+################################################################################
+
+