risk-network 0.0.9b15__tar.gz → 0.0.9b16__tar.gz

{risk_network-0.0.9b15 → risk_network-0.0.9b16}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: risk-network
-Version: 0.0.9b15
+Version: 0.0.9b16
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>
@@ -710,6 +710,8 @@ Requires-Dist: scipy
 Requires-Dist: statsmodels
 Requires-Dist: threadpoolctl
 Requires-Dist: tqdm
+Dynamic: author
+Dynamic: requires-python
 
 # RISK Network
 
@@ -726,7 +728,7 @@ Requires-Dist: tqdm
 ![Downloads](https://img.shields.io/pypi/dm/risk-network)
 ![Platforms](https://img.shields.io/badge/platform-linux%20%7C%20macos%20%7C%20windows-lightgrey)
 
-**RISK (RISK Infers Spatial Kinships)** is a next-generation tool designed to streamline the analysis of biological and non-biological networks. RISK enhances network analysis with its modular architecture, extensive file format support, and advanced clustering algorithms. It simplifies the creation of publication-quality figures, making it an important tool for researchers across disciplines.
+**RISK** (Regional Inference of Significant Kinships) is a next-generation tool designed to streamline the analysis of biological and non-biological networks. RISK enhances network analysis with its modular architecture, extensive file format support, and advanced clustering algorithms. It simplifies the creation of publication-quality figures, making it an important tool for researchers across disciplines.
 
 ## Documentation and Tutorial
 

{risk_network-0.0.9b15 → risk_network-0.0.9b16}/README.md

@@ -13,7 +13,7 @@
 ![Downloads](https://img.shields.io/pypi/dm/risk-network)
 ![Platforms](https://img.shields.io/badge/platform-linux%20%7C%20macos%20%7C%20windows-lightgrey)
 
-**RISK (RISK Infers Spatial Kinships)** is a next-generation tool designed to streamline the analysis of biological and non-biological networks. RISK enhances network analysis with its modular architecture, extensive file format support, and advanced clustering algorithms. It simplifies the creation of publication-quality figures, making it an important tool for researchers across disciplines.
+**RISK** (Regional Inference of Significant Kinships) is a next-generation tool designed to streamline the analysis of biological and non-biological networks. RISK enhances network analysis with its modular architecture, extensive file format support, and advanced clustering algorithms. It simplifies the creation of publication-quality figures, making it an important tool for researchers across disciplines.
 
 ## Documentation and Tutorial
 

risk_network-0.0.9b16/risk/__init__.py

@@ -0,0 +1,10 @@
+"""
+risk
+~~~~
+
+RISK: Regional Inference of Significant Kinships
+"""
+
+from risk.risk import RISK
+
+__version__ = "0.0.9-beta.16"

{risk_network-0.0.9b15 → risk_network-0.0.9b16}/risk/network/plot/contour.py

@@ -270,8 +270,20 @@ class Contour:
         )
 
         # Set linewidth for the contour lines to 0 for levels other than the base level
-        for i in range(1, len(contour_levels)):
-            c.collections[i].set_linewidth(0)
+        c.set_linewidth(0)
+        try:
+            # Try setting linewidth directly on the QuadContourSet
+            c.set_linewidth(0)
+        except AttributeError:
+            # Fallback: Iterate over collections if the direct method fails
+            if hasattr(c, "collections"):
+                for i, collection in enumerate(c.collections):
+                    collection.set_linewidth(0)
+            else:
+                # Raise an error if 'collections' is also not available
+                raise AttributeError(
+                    "'QuadContourSet' object has neither 'set_linewidth' nor 'collections'"
+                )
 
     def get_annotated_contour_colors(
         self,

{risk_network-0.0.9b15 → risk_network-0.0.9b16}/risk/risk.py

@@ -63,7 +63,7 @@ class RISK(NetworkIO, AnnotationsIO):
             network (nx.Graph): The network graph.
             annotations (Dict[str, Any]): The annotations associated with the network.
             distance_metric (str, List, Tuple, or np.ndarray, optional): The distance metric(s) to use. Can be a string for one
-                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'label_propagation',
+                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'leiden', 'label_propagation',
                 'markov_clustering', 'walktrap', 'spinglass'). Defaults to 'louvain'.
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
             leiden_resolution (float, optional): Resolution parameter for Leiden clustering. Defaults to 1.0.
@@ -127,7 +127,7 @@ class RISK(NetworkIO, AnnotationsIO):
             network (nx.Graph): The network graph.
             annotations (Dict[str, Any]): The annotations associated with the network.
             distance_metric (str, List, Tuple, or np.ndarray, optional): The distance metric(s) to use. Can be a string for one
-                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'label_propagation',
+                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'leiden', 'label_propagation',
                 'markov_clustering', 'walktrap', 'spinglass'). Defaults to 'louvain'.
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
             leiden_resolution (float, optional): Resolution parameter for Leiden clustering. Defaults to 1.0.
@@ -194,7 +194,7 @@ class RISK(NetworkIO, AnnotationsIO):
             network (nx.Graph): The network graph.
             annotations (Dict[str, Any]): The annotations associated with the network.
             distance_metric (str, List, Tuple, or np.ndarray, optional): The distance metric(s) to use. Can be a string for one
-                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'label_propagation',
+                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'leiden', 'label_propagation',
                 'markov_clustering', 'walktrap', 'spinglass'). Defaults to 'louvain'.
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
             leiden_resolution (float, optional): Resolution parameter for Leiden clustering. Defaults to 1.0.
@@ -430,7 +430,7 @@ class RISK(NetworkIO, AnnotationsIO):
             network (nx.Graph): The network graph.
             annotations (pd.DataFrame): The matrix of annotations associated with the network.
             distance_metric (str, List, Tuple, or np.ndarray, optional): The distance metric(s) to use. Can be a string for one
-                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'label_propagation',
+                metric or a list/tuple/ndarray of metrics ('greedy_modularity', 'louvain', 'leiden', 'label_propagation',
                 'markov_clustering', 'walktrap', 'spinglass'). Defaults to 'louvain'.
             louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
             leiden_resolution (float, optional): Resolution parameter for Leiden clustering. Defaults to 1.0.

{risk_network-0.0.9b15 → risk_network-0.0.9b16}/risk_network.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: risk-network
-Version: 0.0.9b15
+Version: 0.0.9b16
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>
@@ -710,6 +710,8 @@ Requires-Dist: scipy
 Requires-Dist: statsmodels
 Requires-Dist: threadpoolctl
 Requires-Dist: tqdm
+Dynamic: author
+Dynamic: requires-python
 
 # RISK Network
 
@@ -726,7 +728,7 @@ Requires-Dist: tqdm
 ![Downloads](https://img.shields.io/pypi/dm/risk-network)
 ![Platforms](https://img.shields.io/badge/platform-linux%20%7C%20macos%20%7C%20windows-lightgrey)
 
-**RISK (RISK Infers Spatial Kinships)** is a next-generation tool designed to streamline the analysis of biological and non-biological networks. RISK enhances network analysis with its modular architecture, extensive file format support, and advanced clustering algorithms. It simplifies the creation of publication-quality figures, making it an important tool for researchers across disciplines.
+**RISK** (Regional Inference of Significant Kinships) is a next-generation tool designed to streamline the analysis of biological and non-biological networks. RISK enhances network analysis with its modular architecture, extensive file format support, and advanced clustering algorithms. It simplifies the creation of publication-quality figures, making it an important tool for researchers across disciplines.
 
 ## Documentation and Tutorial
 

risk_network-0.0.9b15/risk/__init__.py

@@ -1,10 +0,0 @@
-"""
-risk
-~~~~
-
-RISK: RISK Infers Spatial Kinships
-"""
-
-from risk.risk import RISK
-
-__version__ = "0.0.9-beta.15"