risk-network 0.0.8b6__tar.gz → 0.0.8b7__tar.gz

{risk_network-0.0.8b6 → risk_network-0.0.8b7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.8b6
+Version: 0.0.8b7
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

{risk_network-0.0.8b6 → risk_network-0.0.8b7}/risk/__init__.py

@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
 
 from risk.risk import RISK
 
-__version__ = "0.0.8-beta.6"
+__version__ = "0.0.8-beta.7"

risk_network-0.0.8b6/risk/network/plot.py → risk_network-0.0.8b7/risk/network/plot/base.py

@@ -213,6 +213,8 @@ class NetworkPlotter:
 
         # Convert color to RGBA using the _to_rgba helper function - use outline_alpha for the perimeter
         color = _to_rgba(color=color, alpha=outline_alpha)
+        # Set the fill_alpha to 0 if not provided
+        fill_alpha = fill_alpha if fill_alpha is not None else 0.0
         # Extract node coordinates from the network graph
         node_coordinates = self.graph.node_coordinates
         # Calculate the center and radius of the bounding box around the network
@@ -676,7 +678,7 @@ class NetworkPlotter:
         # Set the contour color and linestyle
         contour_colors = [color for _ in range(levels - 1)]
         # Plot the filled contours using fill_alpha for transparency
-        if fill_alpha > 0:
+        if fill_alpha and fill_alpha > 0:
             ax.contourf(
                 x,
                 y,

{risk_network-0.0.8b6 → risk_network-0.0.8b7}/risk/risk.py

@@ -3,7 +3,7 @@ risk/risk
 ~~~~~~~~~
 """
 
-from typing import Any, Dict, Tuple
+from typing import Any, Dict, Tuple, Union
 
 import networkx as nx
 import numpy as np
@@ -355,6 +355,7 @@ class RISK(NetworkIO, AnnotationsIO):
         graph: NetworkGraph,
         figsize: Tuple = (10, 10),
         background_color: str = "white",
+        background_alpha: Union[float, None] = 1.0,
     ) -> NetworkPlotter:
         """Get a NetworkPlotter object for plotting.
 
@@ -362,6 +363,8 @@ class RISK(NetworkIO, AnnotationsIO):
             graph (NetworkGraph): The graph to plot.
             figsize (tuple, optional): Size of the figure. Defaults to (10, 10).
             background_color (str, optional): Background color of the plot. Defaults to "white".
+            background_alpha (float, None, optional): Transparency level of the background color. If provided, it overrides
+                any existing alpha values found in background_color. Defaults to 1.0.
 
         Returns:
             NetworkPlotter: A NetworkPlotter object configured with the given parameters.
@@ -378,6 +381,7 @@ class RISK(NetworkIO, AnnotationsIO):
             graph,
             figsize=figsize,
             background_color=background_color,
+            background_alpha=background_alpha,
         )
 
     def _load_neighborhoods(

{risk_network-0.0.8b6 → risk_network-0.0.8b7}/risk_network.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.8b6
+Version: 0.0.8b7
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

{risk_network-0.0.8b6 → risk_network-0.0.8b7}/risk_network.egg-info/SOURCES.txt

@@ -20,7 +20,7 @@ risk/network/__init__.py
 risk/network/geometry.py
 risk/network/graph.py
 risk/network/io.py
-risk/network/plot.py
+risk/network/plot/base.py
 risk/stats/__init__.py
 risk/stats/hypergeom.py
 risk/stats/poisson.py