risk-network 0.0.6b9__tar.gz → 0.0.6b10__tar.gz

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Files changed (37) hide show
  1. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/PKG-INFO +1 -1
  2. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/__init__.py +1 -1
  3. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/log/params.py +2 -0
  4. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/risk.py +3 -3
  5. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk_network.egg-info/PKG-INFO +1 -1
  6. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/LICENSE +0 -0
  7. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/MANIFEST.in +0 -0
  8. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/README.md +0 -0
  9. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/pyproject.toml +0 -0
  10. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/annotations/__init__.py +0 -0
  11. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/annotations/annotations.py +0 -0
  12. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/annotations/io.py +0 -0
  13. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/constants.py +0 -0
  14. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/log/__init__.py +0 -0
  15. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/log/console.py +0 -0
  16. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/neighborhoods/__init__.py +0 -0
  17. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/neighborhoods/community.py +0 -0
  18. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/neighborhoods/domains.py +0 -0
  19. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/neighborhoods/neighborhoods.py +0 -0
  20. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/network/__init__.py +0 -0
  21. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/network/geometry.py +0 -0
  22. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/network/graph.py +0 -0
  23. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/network/io.py +0 -0
  24. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/network/plot.py +0 -0
  25. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/stats/__init__.py +0 -0
  26. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/stats/fisher_exact.py +0 -0
  27. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/stats/hypergeom.py +0 -0
  28. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/stats/permutation/__init__.py +0 -0
  29. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/stats/permutation/permutation.py +0 -0
  30. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/stats/permutation/test_functions.py +0 -0
  31. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/stats/stats.py +0 -0
  32. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk_network.egg-info/SOURCES.txt +0 -0
  33. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk_network.egg-info/dependency_links.txt +0 -0
  34. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk_network.egg-info/requires.txt +0 -0
  35. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk_network.egg-info/top_level.txt +0 -0
  36. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/setup.cfg +0 -0
  37. {risk_network-0.0.6b9 → risk_network-0.0.6b10}/setup.py +0 -0
{risk_network-0.0.6b9 → risk_network-0.0.6b10}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.6b9
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+ Version: 0.0.6b10
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/__init__.py RENAMED
@@ -7,4 +7,4 @@ RISK: RISK Infers Spatial Kinships
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  from risk.risk import RISK
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- __version__ = "0.0.6-beta.9"
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+ __version__ = "0.0.6-beta.10"
{risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/log/params.py RENAMED
@@ -7,6 +7,7 @@ import csv
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  import json
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  import warnings
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  from datetime import datetime
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+ from functools import wraps
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  from typing import Any, Dict
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  import numpy as np
@@ -27,6 +28,7 @@ def _safe_param_export(func):
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  function: The wrapped function with error handling.
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  """
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+ @wraps(func)
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  def wrapper(*args, **kwargs):
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  try:
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  result = func(*args, **kwargs)
{risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk/risk.py RENAMED
@@ -62,7 +62,7 @@ class RISK(NetworkIO, AnnotationsIO):
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  Args:
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  network (nx.Graph): The network graph.
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- annotations (pd.DataFrame): The matrix of annotations associated with the network.
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+ annotations (dict): The annotations associated with the network.
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  distance_metric (str, optional): Distance metric for neighborhood analysis. Defaults to "dijkstra".
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  louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
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  edge_length_threshold (float, optional): Edge length threshold for neighborhood analysis. Defaults to 0.5.
@@ -131,7 +131,7 @@ class RISK(NetworkIO, AnnotationsIO):
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  Args:
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  network (nx.Graph): The network graph.
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- annotations (pd.DataFrame): The matrix of annotations associated with the network.
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+ annotations (dict): The annotations associated with the network.
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  distance_metric (str, optional): Distance metric for neighborhood analysis. Defaults to "dijkstra".
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  louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
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  edge_length_threshold (float, optional): Edge length threshold for neighborhood analysis. Defaults to 0.5.
@@ -187,7 +187,7 @@ class RISK(NetworkIO, AnnotationsIO):
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  Args:
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  network (nx.Graph): The network graph.
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- annotations (pd.DataFrame): The matrix of annotations associated with the network.
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+ annotations (dict): The annotations associated with the network.
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  distance_metric (str, optional): Distance metric for neighborhood analysis. Defaults to "dijkstra".
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  louvain_resolution (float, optional): Resolution parameter for Louvain clustering. Defaults to 0.1.
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  edge_length_threshold (float, optional): Edge length threshold for neighborhood analysis. Defaults to 0.5.
{risk_network-0.0.6b9 → risk_network-0.0.6b10}/risk_network.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.6b9
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+ Version: 0.0.6b10
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.6b9 → risk_network-0.0.6b10}/LICENSE RENAMED
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{risk_network-0.0.6b9 → risk_network-0.0.6b10}/setup.py RENAMED
File without changes