risk-network 0.0.4b3__tar.gz → 0.0.5b1__tar.gz

{risk_network-0.0.4b3 → risk_network-0.0.5b1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.4b3
+Version: 0.0.5b1
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

risk_network-0.0.5b1/risk/__init__.py

@@ -0,0 +1,10 @@
+"""
+risk
+~~~~
+
+RISK: RISK Infers Spatial Kinships
+"""
+
+from risk.risk import RISK
+
+__version__ = "0.0.5-beta.1"

{risk_network-0.0.4b3 → risk_network-0.0.5b1}/risk/network/plot.py

@@ -33,6 +33,7 @@ class NetworkPlotter:
         plot_outline: bool = True,
         outline_color: str = "black",
         outline_scale: float = 1.0,
+        linestyle: str = "dashed",
     ) -> None:
         """Initialize the NetworkPlotter with a NetworkGraph object and plotting parameters.
 
@@ -43,11 +44,18 @@ class NetworkPlotter:
             plot_outline (bool, optional): Whether to plot the network perimeter circle. Defaults to True.
             outline_color (str, optional): Color of the network perimeter circle. Defaults to "black".
             outline_scale (float, optional): Outline scaling factor for the perimeter diameter. Defaults to 1.0.
+            linestyle (str): Line style for the network perimeter circle (e.g., dashed, solid). Defaults to "dashed".
         """
         self.graph = graph
         # Initialize the plot with the specified parameters
         self.ax = self._initialize_plot(
-            graph, figsize, background_color, plot_outline, outline_color, outline_scale
+            graph,
+            figsize,
+            background_color,
+            plot_outline,
+            outline_color,
+            outline_scale,
+            linestyle,
         )
 
     def _initialize_plot(
@@ -58,6 +66,7 @@ class NetworkPlotter:
         plot_outline: bool,
         outline_color: str,
         outline_scale: float,
+        linestyle: str,
     ) -> plt.Axes:
         """Set up the plot with figure size, optional circle perimeter, and background color.
 
@@ -68,6 +77,7 @@ class NetworkPlotter:
             plot_outline (bool): Whether to plot the network perimeter circle.
             outline_color (str): Color of the network perimeter circle.
             outline_scale (float): Outline scaling factor for the perimeter diameter.
+            linestyle (str): Line style for the network perimeter circle (e.g., dashed, solid).
 
         Returns:
             plt.Axes: The axis object for the plot.
@@ -87,7 +97,7 @@ class NetworkPlotter:
             circle = plt.Circle(
                 center,
                 scaled_radius,
-                linestyle="--",
+                linestyle=linestyle,  # Use the linestyle argument here
                 color=outline_color,
                 fill=False,
                 linewidth=1.5,

{risk_network-0.0.4b3 → risk_network-0.0.5b1}/risk/risk.py

@@ -352,6 +352,7 @@ class RISK(NetworkIO, AnnotationsIO):
         plot_outline: bool = True,
         outline_color: str = "black",
         outline_scale: float = 1.00,
+        linestyle: str = "dashed",
     ) -> NetworkPlotter:
         """Get a NetworkPlotter object for plotting.
 
@@ -362,6 +363,7 @@ class RISK(NetworkIO, AnnotationsIO):
             plot_outline (bool, optional): Whether to plot the network outline. Defaults to True.
             outline_color (str, optional): Color of the outline. Defaults to "black".
             outline_scale (float, optional): Scaling factor for the outline. Defaults to 1.00.
+            linestyle (str): Line style for the network perimeter circle (e.g., dashed, solid). Defaults to "dashed".
 
         Returns:
             NetworkPlotter: A NetworkPlotter object configured with the given parameters.
@@ -374,6 +376,7 @@ class RISK(NetworkIO, AnnotationsIO):
             plot_outline=plot_outline,
             outline_color=outline_color,
             outline_scale=outline_scale,
+            linestyle=linestyle,
         )
 
         # Initialize and return a NetworkPlotter object
@@ -384,6 +387,7 @@ class RISK(NetworkIO, AnnotationsIO):
             plot_outline=plot_outline,
             outline_color=outline_color,
             outline_scale=outline_scale,
+            linestyle=linestyle,
         )
 
     def _load_neighborhoods(

{risk_network-0.0.4b3 → risk_network-0.0.5b1}/risk_network.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: risk-network
-Version: 0.0.4b3
+Version: 0.0.5b1
 Summary: A Python package for biological network analysis
 Author: Ira Horecka
 Author-email: Ira Horecka <ira89@icloud.com>

risk_network-0.0.4b3/risk/__init__.py

@@ -1,10 +0,0 @@
-"""
-risk
-~~~~
-
-RISK: RISK Infers Spatial Kinship
-"""
-
-from risk.risk import RISK
-
-__version__ = "0.0.4-beta.3"