risk-network 0.0.3b3__tar.gz → 0.0.3b4__tar.gz

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Files changed (33) hide show
  1. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/PKG-INFO +1 -1
  2. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/__init__.py +1 -1
  3. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/stats/stats.py +3 -1
  4. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk_network.egg-info/PKG-INFO +1 -1
  5. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/LICENSE +0 -0
  6. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/MANIFEST.in +0 -0
  7. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/README.md +0 -0
  8. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/pyproject.toml +0 -0
  9. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/annotations/__init__.py +0 -0
  10. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/annotations/annotations.py +0 -0
  11. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/annotations/io.py +0 -0
  12. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/constants.py +0 -0
  13. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/log/__init__.py +0 -0
  14. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/log/console.py +0 -0
  15. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/log/params.py +0 -0
  16. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/neighborhoods/__init__.py +0 -0
  17. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/neighborhoods/community.py +0 -0
  18. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/neighborhoods/domains.py +0 -0
  19. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/neighborhoods/neighborhoods.py +0 -0
  20. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/network/__init__.py +0 -0
  21. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/network/geometry.py +0 -0
  22. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/network/graph.py +0 -0
  23. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/network/io.py +0 -0
  24. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/network/plot.py +0 -0
  25. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/risk.py +0 -0
  26. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/stats/__init__.py +0 -0
  27. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/stats/permutation.py +0 -0
  28. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk_network.egg-info/SOURCES.txt +0 -0
  29. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk_network.egg-info/dependency_links.txt +0 -0
  30. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk_network.egg-info/requires.txt +0 -0
  31. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk_network.egg-info/top_level.txt +0 -0
  32. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/setup.cfg +0 -0
  33. {risk_network-0.0.3b3 → risk_network-0.0.3b4}/setup.py +0 -0
{risk_network-0.0.3b3 → risk_network-0.0.3b4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.3b3
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+ Version: 0.0.3b4
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/__init__.py RENAMED
@@ -10,4 +10,4 @@ RISK: RISK Infers Spatial Kinship
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  from risk.risk import RISK
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- __version__ = "0.0.3-beta.3"
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+ __version__ = "0.0.3-beta.4"
{risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk/stats/stats.py RENAMED
@@ -153,9 +153,11 @@ def _run_permutation_test(
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  results = pool.starmap_async(_permutation_process_subset, params_list)
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  # Update progress bar based on progress_counter
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+ # NOTE: Waiting for results to be ready while updating progress bar gives a big improvement
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+ # in performance, especially for large number of permutations and workers
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  while not results.ready():
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  progress.update(progress_counter.value - progress.n)
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- results.wait(0.1)
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+ results.wait(1) # Wait for 1 second
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  # Ensure progress bar reaches 100%
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  progress.update(total_progress - progress.n)
{risk_network-0.0.3b3 → risk_network-0.0.3b4}/risk_network.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: risk-network
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- Version: 0.0.3b3
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+ Version: 0.0.3b4
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  Summary: A Python package for biological network analysis
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  Author: Ira Horecka
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  Author-email: Ira Horecka <ira89@icloud.com>
{risk_network-0.0.3b3 → risk_network-0.0.3b4}/LICENSE RENAMED
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{risk_network-0.0.3b3 → risk_network-0.0.3b4}/README.md RENAMED
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{risk_network-0.0.3b3 → risk_network-0.0.3b4}/setup.cfg RENAMED
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{risk_network-0.0.3b3 → risk_network-0.0.3b4}/setup.py RENAMED
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