risk-network 0.0.14b0__tar.gz → 0.0.14b1__tar.gz

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Files changed (53) hide show
  1. {risk_network-0.0.14b0/src/risk_network.egg-info → risk_network-0.0.14b1}/PKG-INFO +1 -1
  2. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/__init__.py +1 -1
  3. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_api.py +0 -3
  4. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_graph/_api.py +0 -3
  5. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_io.py +0 -18
  6. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_api.py +0 -3
  7. {risk_network-0.0.14b0 → risk_network-0.0.14b1/src/risk_network.egg-info}/PKG-INFO +1 -1
  8. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/LICENSE +0 -0
  9. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/README.md +0 -0
  10. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/pyproject.toml +0 -0
  11. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/setup.cfg +0 -0
  12. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_annotation/__init__.py +0 -0
  13. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_annotation/_annotation.py +0 -0
  14. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_annotation/_io.py +0 -0
  15. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_annotation/_nltk_setup.py +0 -0
  16. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_log/__init__.py +0 -0
  17. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_log/_console.py +0 -0
  18. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_log/_parameters.py +0 -0
  19. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/__init__.py +0 -0
  20. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_community.py +0 -0
  21. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_domains.py +0 -0
  22. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_neighborhoods.py +0 -0
  23. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_stats/__init__.py +0 -0
  24. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_stats/_permutation/__init__.py +0 -0
  25. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_stats/_permutation/_permutation.py +0 -0
  26. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_stats/_permutation/_test_functions.py +0 -0
  27. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_neighborhoods/_stats/_tests.py +0 -0
  28. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/__init__.py +0 -0
  29. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_graph/__init__.py +0 -0
  30. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_graph/_graph.py +0 -0
  31. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_graph/_stats.py +0 -0
  32. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_graph/_summary.py +0 -0
  33. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/__init__.py +0 -0
  34. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_canvas.py +0 -0
  35. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_contour.py +0 -0
  36. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_labels.py +0 -0
  37. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_network.py +0 -0
  38. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_plotter.py +0 -0
  39. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_utils/__init__.py +0 -0
  40. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_utils/_colors.py +0 -0
  41. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_network/_plotter/_utils/_layout.py +0 -0
  42. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk/_risk.py +0 -0
  43. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk_network.egg-info/SOURCES.txt +0 -0
  44. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk_network.egg-info/dependency_links.txt +0 -0
  45. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk_network.egg-info/requires.txt +0 -0
  46. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/src/risk_network.egg-info/top_level.txt +0 -0
  47. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/tests/test_load_annotation.py +0 -0
  48. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/tests/test_load_graph.py +0 -0
  49. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/tests/test_load_io_combinations.py +0 -0
  50. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/tests/test_load_neighborhoods.py +0 -0
  51. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/tests/test_load_network.py +0 -0
  52. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/tests/test_load_plotter.py +0 -0
  53. {risk_network-0.0.14b0 → risk_network-0.0.14b1}/tests/test_log.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: risk-network
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- Version: 0.0.14b0
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+ Version: 0.0.14b1
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  Summary: A Python package for scalable network analysis and high-quality visualization.
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  Author-email: Ira Horecka <ira89@icloud.com>
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  License: GPL-3.0-or-later
@@ -8,4 +8,4 @@ RISK: Regional Inference of Significant Kinships
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  from ._risk import RISK
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  __all__ = ["RISK"]
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- __version__ = "0.0.14-beta.0"
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+ __version__ = "0.0.14-beta.1"
@@ -29,9 +29,6 @@ class NeighborhoodsAPI:
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  The NeighborhoodsAPI class provides methods to load neighborhood results from statistical tests.
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  """
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- def __init__(self) -> None:
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- pass
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-
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  def load_neighborhoods_binom(
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  self,
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  network: nx.Graph,
@@ -27,9 +27,6 @@ class GraphAPI:
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  The GraphAPI class provides methods to load and process network graphs, annotations, and neighborhoods.
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  """
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- def __init__(self) -> None:
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- pass
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-
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  def load_graph(
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  self,
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  network: nx.Graph,
@@ -24,24 +24,6 @@ class NetworkAPI:
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  Delegates to the NetworkIO worker class for actual I/O and processing.
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  """
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- def __init__(
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- self,
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- compute_sphere: bool = True,
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- surface_depth: float = 0.0,
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- min_edges_per_node: int = 0,
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- ):
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- """
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- Initialize the NetworkAPI.
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-
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- Args:
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- compute_sphere (bool): Whether to map nodes to a sphere. Defaults to True.
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- surface_depth (float): Surface depth for the sphere. Defaults to 0.0.
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- min_edges_per_node (int): Minimum number of edges per node. Defaults to 0.
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- """
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- self.compute_sphere = compute_sphere
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- self.surface_depth = surface_depth
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- self.min_edges_per_node = min_edges_per_node
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-
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  def load_network_gpickle(
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  self,
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  filepath: str,
@@ -19,9 +19,6 @@ class PlotterAPI:
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  The PlotterAPI class provides methods to load and configure Plotter objects for plotting network graphs.
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  """
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- def __init__(self) -> None:
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- pass
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-
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  def load_plotter(
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  self,
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  graph: Graph,
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: risk-network
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- Version: 0.0.14b0
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+ Version: 0.0.14b1
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  Summary: A Python package for scalable network analysis and high-quality visualization.
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  Author-email: Ira Horecka <ira89@icloud.com>
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  License: GPL-3.0-or-later
File without changes