ricgraph 2.6__tar.gz → 2.7__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ricgraph
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- Version: 2.6
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+ Version: 2.7
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  Summary: Ricgraph - Research in context graph
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  Author: Rik D.T. Janssen
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  Project-URL: Website, https://www.ricgraph.eu
@@ -17,36 +17,30 @@ Classifier: Programming Language :: Python :: 3
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  Requires-Python: >=3.9
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: connexion[flask,swagger-ui,uvicorn]
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- Requires-Dist: flask
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- Requires-Dist: gunicorn
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- Requires-Dist: markupsafe
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  Requires-Dist: neo4j>=5.8
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  Requires-Dist: numpy
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- Requires-Dist: openapi_markdown
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  Requires-Dist: pandas
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- Requires-Dist: pyalex
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- Requires-Dist: ratelimit
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  Requires-Dist: requests
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- Requires-Dist: Sickle
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- Requires-Dist: xmltodict
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-
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- [![Static Badge](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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- [![Static Badge](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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- [![Static Badge](https://img.shields.io/badge/Website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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- ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph)
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- ![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)
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+
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+ [![DOI software](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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+ [![DOI reference publication](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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+ [![website](https://img.shields.io/badge/website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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+ ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph?color=green)
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+ [![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)](https://github.com/UtrechtUniversity/ricgraph/releases)
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  ![GitHub commits since latest release](https://img.shields.io/github/commits-since/UtrechtUniversity/ricgraph/latest?color=green)
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- ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph)
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- [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph)](LICENSE)
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+ ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph?color=green)
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+ [![PyPI version](https://img.shields.io/pypi/v/ricgraph?label=PyPI%20version&color=green)](https://pypi.org/project/ricgraph)
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+ [![PyPI downloads](https://img.shields.io/pypi/dm/ricgraph?label=PyPI%20downloads&color=green)](https://pypistats.org/packages/ricgraph)
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+ [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph?color=green)](LICENSE)
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  [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
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- [![Technology Readiness Level 6/9 - Late Prototype - Technology demonstrated in target setting, end-users adopt it for testing purposes](https://w3id.org/research-technology-readiness-levels/Level6LatePrototype.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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+ [![Technology Readiness Level 7/9 - Release Candidate - Technology ready enough and in initial use by end-users in intended scholarly environments](https://w3id.org/research-technology-readiness-levels/Level7ReleaseCandidate.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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  [![FAIR checklist badge](https://fairsoftwarechecklist.net/badge.svg)](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32110&r=123)
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  <!---
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  Note, the lines 'Website' and
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- 'GitHub last commit' end in two spaces, to force a line break but not a paragraph break.
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+ 'PyPI downloads' end in two spaces, to force a line break but not a paragraph break.
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  --->
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- <img src="https://raw.githubusercontent.com/UtrechtUniversity/ricgraph/refs/heads/main/docs/images/ricgraph_logo.jpg" height="30">
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+
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+ <img alt="Ricgraph logo" src="https://raw.githubusercontent.com/UtrechtUniversity/ricgraph/refs/heads/main/docs/images/ricgraph_logo.png" height="30">
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  # Ricgraph - Research in context graph
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@@ -1,19 +1,22 @@
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- [![Static Badge](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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- [![Static Badge](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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- [![Static Badge](https://img.shields.io/badge/Website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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- ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph)
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- ![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)
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+ [![DOI software](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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+ [![DOI reference publication](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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+ [![website](https://img.shields.io/badge/website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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+ ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph?color=green)
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+ [![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)](https://github.com/UtrechtUniversity/ricgraph/releases)
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  ![GitHub commits since latest release](https://img.shields.io/github/commits-since/UtrechtUniversity/ricgraph/latest?color=green)
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- ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph)
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- [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph)](LICENSE)
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+ ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph?color=green)
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+ [![PyPI version](https://img.shields.io/pypi/v/ricgraph?label=PyPI%20version&color=green)](https://pypi.org/project/ricgraph)
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+ [![PyPI downloads](https://img.shields.io/pypi/dm/ricgraph?label=PyPI%20downloads&color=green)](https://pypistats.org/packages/ricgraph)
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+ [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph?color=green)](LICENSE)
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  [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
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- [![Technology Readiness Level 6/9 - Late Prototype - Technology demonstrated in target setting, end-users adopt it for testing purposes](https://w3id.org/research-technology-readiness-levels/Level6LatePrototype.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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+ [![Technology Readiness Level 7/9 - Release Candidate - Technology ready enough and in initial use by end-users in intended scholarly environments](https://w3id.org/research-technology-readiness-levels/Level7ReleaseCandidate.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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  [![FAIR checklist badge](https://fairsoftwarechecklist.net/badge.svg)](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32110&r=123)
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  <!---
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  Note, the lines 'Website' and
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- 'GitHub last commit' end in two spaces, to force a line break but not a paragraph break.
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+ 'PyPI downloads' end in two spaces, to force a line break but not a paragraph break.
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  --->
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- <img src="https://raw.githubusercontent.com/UtrechtUniversity/ricgraph/refs/heads/main/docs/images/ricgraph_logo.jpg" height="30">
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+
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+ <img alt="Ricgraph logo" src="https://raw.githubusercontent.com/UtrechtUniversity/ricgraph/refs/heads/main/docs/images/ricgraph_logo.png" height="30">
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  # Ricgraph - Research in context graph
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@@ -1,19 +1,22 @@
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- [![Static Badge](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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- [![Static Badge](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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- [![Static Badge](https://img.shields.io/badge/Website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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- ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph)
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- ![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)
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+ [![DOI software](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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+ [![DOI reference publication](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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+ [![website](https://img.shields.io/badge/website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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+ ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph?color=green)
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+ [![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)](https://github.com/UtrechtUniversity/ricgraph/releases)
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  ![GitHub commits since latest release](https://img.shields.io/github/commits-since/UtrechtUniversity/ricgraph/latest?color=green)
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- ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph)
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- [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph)](LICENSE)
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+ ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph?color=green)
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+ [![PyPI version](https://img.shields.io/pypi/v/ricgraph?label=PyPI%20version&color=green)](https://pypi.org/project/ricgraph)
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+ [![PyPI downloads](https://img.shields.io/pypi/dm/ricgraph?label=PyPI%20downloads&color=green)](https://pypistats.org/packages/ricgraph)
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+ [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph?color=green)](LICENSE)
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  [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
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- [![Technology Readiness Level 6/9 - Late Prototype - Technology demonstrated in target setting, end-users adopt it for testing purposes](https://w3id.org/research-technology-readiness-levels/Level6LatePrototype.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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+ [![Technology Readiness Level 7/9 - Release Candidate - Technology ready enough and in initial use by end-users in intended scholarly environments](https://w3id.org/research-technology-readiness-levels/Level7ReleaseCandidate.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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  [![FAIR checklist badge](https://fairsoftwarechecklist.net/badge.svg)](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32110&r=123)
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  <!---
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  Note, the lines 'Website' and
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- 'GitHub last commit' end in two spaces, to force a line break but not a paragraph break.
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+ 'PyPI downloads' end in two spaces, to force a line break but not a paragraph break.
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  --->
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- <img src="docs/images/ricgraph_logo.jpg" height="30">
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+
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+ <img alt="Ricgraph logo" src="docs/images/ricgraph_logo.png" height="30">
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  # Ricgraph - Research in context graph
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@@ -111,7 +114,7 @@ For a further introduction, you might want to read these two presentations:
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  (and other source systems) using Ricgraph
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  and [BackToPure](https://github.com/UtrechtUniversity/BackToPure):
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  https://doi.org/10.5281/zenodo.12634658.
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- This presentation explains that after harvesting several Pure's
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+ This presentation explains that after harvesting several Pure systems
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  (from different institutions) and other source systems,
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  such as [OpenAlex](https://openalex.org),
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  one can enrich its own Pure _A_ by using information in other source
@@ -304,7 +307,7 @@ More examples can be found in [Ricgraph details](docs/ricgraph_details.md).
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  (and other source systems) using Ricgraph
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  and [BackToPure](https://github.com/UtrechtUniversity/BackToPure):
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  https://doi.org/10.5281/zenodo.12634658.
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- This presentation explains that after harvesting several Pure's
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+ This presentation explains that after harvesting several Pure systems
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  (from different institutions) and other source systems,
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  such as [OpenAlex](https://openalex.org),
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  one can enrich its own Pure _A_ by using information in other source
@@ -7,7 +7,7 @@ packages = ["ricgraph"]
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  [project]
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  name = "ricgraph"
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- version = "2.6"
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+ version = "2.7"
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  authors = [
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  { name="Rik D.T. Janssen" },
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  ]
@@ -24,19 +24,10 @@ keywords = ["Ricgraph", "Ricgraph Explorer", "Ricgraph REST API", "Research in c
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  "Graph", "Graph database", "Data harvesting", "Data enrichment", "Data linking",
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  "Linked data", "Knowledge graph", "Metadata", "Utrecht University"]
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  dependencies = [
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- "connexion[swagger-ui,flask,uvicorn]",
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- "flask",
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- "gunicorn",
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- "markupsafe",
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  "neo4j >= 5.8",
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  "numpy",
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- "openapi_markdown",
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  "pandas",
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- "pyalex",
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- "ratelimit",
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  "requests",
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- "Sickle",
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- "xmltodict",
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  ]
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  [project.urls]
@@ -33,6 +33,6 @@
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  #
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  # ########################################################################
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- __version__ = '2.6'
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+ __version__ = '2.7'
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  from .ricgraph import *
@@ -1317,7 +1317,11 @@ def read_all_nodes(name: str = '', category: str = '', value: str = '',
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  def read_all_values_of_property(node_property: str = '') -> list:
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  """Read all the values of a certain property.
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- :param node_property: the property to find all values.
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+ :param node_property: the property to find all values:
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+ 'name': all different name properties.
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+ 'category': all different category properties.
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+ '_source': all different _source properties.
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+ 'name_personal': all different name properties that are personal identifiers.
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  :return: a sorted list with all the values, or empty list on error.
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  """
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  global _graph
@@ -1327,13 +1331,23 @@ def read_all_values_of_property(node_property: str = '') -> list:
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  return []
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  if node_property != 'name' \
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+ and node_property != 'name_personal' \
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  and node_property != 'category' \
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  and node_property != '_source':
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  print('\nread_all_values_of_property(): Error: function does not work for property "'
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  + node_property + '".\n\n')
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  return []
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- cypher_query = 'MATCH (node:RicgraphNode) RETURN COLLECT (DISTINCT node.' + node_property + ') AS entries'
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+
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+ if node_property == 'name_personal':
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+ # Note that the comment property of 'person-root' contains FULL_NAMEs,
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+ # so it is also a name property that is a personal identifier.
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+ cypher_query = 'MATCH (node:RicgraphNode) '
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+ cypher_query += 'WHERE node.category = "person" '
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+ cypher_query += 'RETURN COLLECT (DISTINCT node.name) AS entries'
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+ else:
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+ cypher_query = 'MATCH (node:RicgraphNode) '
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+ cypher_query += 'RETURN COLLECT (DISTINCT node.' + node_property + ') AS entries'
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  result = _graph.execute_query(cypher_query,
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  result_transformer_=Result.data,
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  database_=ricgraph_databasename())
@@ -2139,6 +2153,15 @@ def get_all_neighbor_nodes(node: Node,
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  if node is None:
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  return []
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+ if name_want is None:
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+ name_want = []
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+ if name_dontwant is None:
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+ name_dontwant = []
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+ if category_want is None:
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+ category_want = []
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+ if category_dontwant is None:
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+ category_dontwant = []
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+
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  cypher_query = 'MATCH (node:RicgraphNode)-[]->(neighbor:RicgraphNode) '
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  if ricgraph_database() == 'neo4j':
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  cypher_query += 'WHERE (elementId(node)=$node_element_id) '
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: ricgraph
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- Version: 2.6
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+ Version: 2.7
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  Summary: Ricgraph - Research in context graph
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  Author: Rik D.T. Janssen
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  Project-URL: Website, https://www.ricgraph.eu
@@ -17,36 +17,30 @@ Classifier: Programming Language :: Python :: 3
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  Requires-Python: >=3.9
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: connexion[flask,swagger-ui,uvicorn]
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- Requires-Dist: flask
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- Requires-Dist: gunicorn
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- Requires-Dist: markupsafe
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  Requires-Dist: neo4j>=5.8
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  Requires-Dist: numpy
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- Requires-Dist: openapi_markdown
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  Requires-Dist: pandas
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- Requires-Dist: pyalex
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- Requires-Dist: ratelimit
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  Requires-Dist: requests
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- Requires-Dist: Sickle
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- Requires-Dist: xmltodict
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-
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- [![Static Badge](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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- [![Static Badge](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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- [![Static Badge](https://img.shields.io/badge/Website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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- ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph)
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- ![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)
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+
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+ [![DOI software](https://img.shields.io/badge/DOI%20%20software-10.5281/zenodo.7524314-blue)](https://doi.org/10.5281/zenodo.7524314)
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+ [![DOI reference publication](https://img.shields.io/badge/DOI%20reference%20publication-10.1016%2Fj.softx.2024.101736-blue)](https://doi.org/10.1016/j.softx.2024.101736)
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+ [![website](https://img.shields.io/badge/website-www.ricgraph.eu-blue)](https://www.ricgraph.eu)
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+ ![GitHub release date](https://img.shields.io/github/release-date/UtrechtUniversity/ricgraph?color=green)
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+ [![GitHub latest release](https://img.shields.io/github/release/UtrechtUniversity/ricgraph?color=green)](https://github.com/UtrechtUniversity/ricgraph/releases)
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  ![GitHub commits since latest release](https://img.shields.io/github/commits-since/UtrechtUniversity/ricgraph/latest?color=green)
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- ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph)
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- [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph)](LICENSE)
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+ ![GitHub last commit](https://img.shields.io/github/last-commit/UtrechtUniversity/ricgraph?color=green)
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+ [![PyPI version](https://img.shields.io/pypi/v/ricgraph?label=PyPI%20version&color=green)](https://pypi.org/project/ricgraph)
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+ [![PyPI downloads](https://img.shields.io/pypi/dm/ricgraph?label=PyPI%20downloads&color=green)](https://pypistats.org/packages/ricgraph)
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+ [![GitHub license](https://img.shields.io/github/license/UtrechtUniversity/ricgraph?color=green)](LICENSE)
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  [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
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- [![Technology Readiness Level 6/9 - Late Prototype - Technology demonstrated in target setting, end-users adopt it for testing purposes](https://w3id.org/research-technology-readiness-levels/Level6LatePrototype.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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+ [![Technology Readiness Level 7/9 - Release Candidate - Technology ready enough and in initial use by end-users in intended scholarly environments](https://w3id.org/research-technology-readiness-levels/Level7ReleaseCandidate.svg)](https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md#15--you-should-express-a-technology-readiness-level)
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  [![FAIR checklist badge](https://fairsoftwarechecklist.net/badge.svg)](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32110&r=123)
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  <!---
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  Note, the lines 'Website' and
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- 'GitHub last commit' end in two spaces, to force a line break but not a paragraph break.
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+ 'PyPI downloads' end in two spaces, to force a line break but not a paragraph break.
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  --->
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- <img src="https://raw.githubusercontent.com/UtrechtUniversity/ricgraph/refs/heads/main/docs/images/ricgraph_logo.jpg" height="30">
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+
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+ <img alt="Ricgraph logo" src="https://raw.githubusercontent.com/UtrechtUniversity/ricgraph/refs/heads/main/docs/images/ricgraph_logo.png" height="30">
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  # Ricgraph - Research in context graph
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@@ -0,0 +1,4 @@
1
+ neo4j>=5.8
2
+ numpy
3
+ pandas
4
+ requests
@@ -1,13 +0,0 @@
1
- connexion[flask,swagger-ui,uvicorn]
2
- flask
3
- gunicorn
4
- markupsafe
5
- neo4j>=5.8
6
- numpy
7
- openapi_markdown
8
- pandas
9
- pyalex
10
- ratelimit
11
- requests
12
- Sickle
13
- xmltodict
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