returnn 1.20250416.134058__tar.gz → 1.20250416.172956__tar.gz
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- {returnn-1.20250416.134058/returnn.egg-info → returnn-1.20250416.172956}/PKG-INFO +1 -1
- returnn-1.20250416.172956/_setup_info_generated.py +2 -0
- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/returnn/datasets/hdf.py +12 -2
- {returnn-1.20250416.134058 → returnn-1.20250416.172956/returnn.egg-info}/PKG-INFO +1 -1
- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/tests/test_HDFDataset.py +75 -0
- returnn-1.20250416.134058/_setup_info_generated.py +0 -2
- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/.editorconfig +0 -0
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- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/MANIFEST.in +0 -0
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- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/__init__.py +0 -0
- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/demos/12AX.cluster_map +0 -0
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- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/demos/demo-hyper-param-tuning.config +0 -0
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- {returnn-1.20250416.134058 → returnn-1.20250416.172956}/demos/mdlstm/artificial/create_test_h5.py +0 -0
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@@ -1201,6 +1201,7 @@ class SimpleHDFWriter:
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shape = [None] * ndim # type: typing.List[typing.Optional[int]]
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if ndim >= 2:
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shape[-1] = dim
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assert all(shape[1:]), f"{self} extra {data_key!r} supports only dyn dim in first axis, got shape {shape!r}"
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if dtype == "string":
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# noinspection PyUnresolvedReferences
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dtype = h5py.special_dtype(vlen=str)
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self._datasets[name] = self._file.create_dataset(
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name, raw_data.shape, raw_data.dtype, maxshape=tuple(None for _ in raw_data.shape)
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)
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expected_shape = (raw_data.shape[0],) + self._datasets[name].shape[1:]
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self._datasets[name].resize(old_shape[0] + raw_data.shape[0], axis=0)
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assert (
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), f"{self} insert: shape mismatch: expected {expected_shape}, got {raw_data.shape}"
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self._datasets[name][self._file.attrs["numTimesteps"] :] = raw_data
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self._file.attrs["numTimesteps"] += raw_data.shape[0]
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@@ -1286,13 +1292,17 @@ class SimpleHDFWriter:
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self._seq_lengths[seq_idx, data_key_idx_0 + 1] = self._extra_num_time_steps[data_key_]
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self._extra_num_time_steps[data_key] += raw_data.shape[0]
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self._datasets[data_key]
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hdf_data = self._datasets[data_key]
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hdf_data.resize(self._extra_num_time_steps[data_key], axis=0)
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data_key_idx = sorted(self._prepared_extra).index(data_key) + 1
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self._seq_lengths[seq_idx, data_key_idx] = raw_data.shape[0]
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offset = self._extra_num_time_steps[data_key] - raw_data.shape[0]
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-
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expected_shape = (raw_data.shape[0],) + hdf_data.shape[1:]
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+
assert (
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expected_shape == raw_data.shape
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), f"{self} insert other {data_key!r}: shape mismatch: expected {expected_shape}, got {raw_data.shape}"
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hdf_data[offset:] = raw_data
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1308
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def insert_batch(self, inputs, seq_len, seq_tag, extra=None):
|
|
@@ -576,6 +576,81 @@ def test_SimpleHDFWriter_labels():
|
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576
576
|
assert reader.seq_lens[i]["data"] == seq_len
|
|
577
577
|
|
|
578
578
|
|
|
579
|
+
def test_SimpleHDFWriter_extra_with_feat():
|
|
580
|
+
from returnn.tensor import TensorDict, Dim, batch_dim
|
|
581
|
+
from returnn.tensor.utils import tensor_dict_fill_random_numpy_
|
|
582
|
+
|
|
583
|
+
fn = get_test_tmp_file(suffix=".hdf")
|
|
584
|
+
os.remove(fn) # SimpleHDFWriter expects that the file does not exist
|
|
585
|
+
|
|
586
|
+
# See i6_experiments.users.zeyer.forward_to_hdf._returnn_get_forward_callback.
|
|
587
|
+
# (Maybe also somewhat similar: HDFDumpLayer)
|
|
588
|
+
spatial_dim = Dim(None, name="spatial")
|
|
589
|
+
k_dim = Dim(5, name="k")
|
|
590
|
+
vocab_dim = Dim(11, name="vocab")
|
|
591
|
+
expected_outputs = TensorDict()
|
|
592
|
+
expected_outputs.update(
|
|
593
|
+
{
|
|
594
|
+
"output": {"dims": [batch_dim, spatial_dim, k_dim], "dtype": "int32", "sparse_dim": vocab_dim},
|
|
595
|
+
"k_log_probs": {"dims": [batch_dim, spatial_dim, k_dim], "dtype": "float32"},
|
|
596
|
+
},
|
|
597
|
+
auto_convert=True,
|
|
598
|
+
)
|
|
599
|
+
output = expected_outputs["output"]
|
|
600
|
+
|
|
601
|
+
writer = SimpleHDFWriter(
|
|
602
|
+
filename=fn,
|
|
603
|
+
dim=output.dim,
|
|
604
|
+
ndim=output.ndim,
|
|
605
|
+
labels=output.vocab and output.vocab.labels,
|
|
606
|
+
# Note: in HDFDumpLayer, we use ndim=min(v.ndim - len(v.size_placeholder) + 1, 2) instead of just v.ndim...
|
|
607
|
+
extra_type={k: (v.shape[-1], v.ndim, v.dtype) for k, v in expected_outputs.data.items() if k != "output"},
|
|
608
|
+
extra_labels={k: v.vocab.labels for k, v in expected_outputs.data.items() if k != "output" and v.vocab},
|
|
609
|
+
)
|
|
610
|
+
|
|
611
|
+
expected_outputs.reset_content()
|
|
612
|
+
tensor_dict_fill_random_numpy_(expected_outputs)
|
|
613
|
+
|
|
614
|
+
# Note: HDFDumpLayer does a lot of extra stuff for the extra data...
|
|
615
|
+
# We are following i6_experiments.users.zeyer.forward_to_hdf here.
|
|
616
|
+
# We iterate over the batch dim, to insert each seq separately,
|
|
617
|
+
# which is important that the extra data seq lens are correct
|
|
618
|
+
# (insert_batch would not know this otherwise).
|
|
619
|
+
batch_size = output.raw_tensor.shape[0]
|
|
620
|
+
for b in range(batch_size):
|
|
621
|
+
writer.insert_batch(
|
|
622
|
+
inputs=output.raw_tensor[b : b + 1, : spatial_dim.dyn_size[b]],
|
|
623
|
+
# We are following i6_experiments.users.zeyer.forward_to_hdf here.
|
|
624
|
+
# This logic then in turn will flatten the dims internally.
|
|
625
|
+
seq_len={0: spatial_dim.dyn_size[b : b + 1], 1: [k_dim.dimension]},
|
|
626
|
+
seq_tag=[f"seq-{b}"],
|
|
627
|
+
extra={
|
|
628
|
+
k: v.raw_tensor[b : b + 1, : spatial_dim.dyn_size[b]]
|
|
629
|
+
for k, v in expected_outputs.data.items()
|
|
630
|
+
if k != "output"
|
|
631
|
+
},
|
|
632
|
+
)
|
|
633
|
+
|
|
634
|
+
writer.close()
|
|
635
|
+
|
|
636
|
+
dataset = HDFDataset(files=[fn])
|
|
637
|
+
reader = DatasetTestReader(dataset=dataset)
|
|
638
|
+
reader.read_all()
|
|
639
|
+
assert reader.num_seqs > 0
|
|
640
|
+
assert set(reader.data.keys()) == {"data", "k_log_probs", "sizes"}
|
|
641
|
+
for i in range(reader.num_seqs):
|
|
642
|
+
# data dims will be flattened.
|
|
643
|
+
data0 = reader.data["data"][i]
|
|
644
|
+
print(f"** seq_idx {i} data key 'data' shape {data0.shape}")
|
|
645
|
+
assert data0.ndim == 1 and data0.shape[0] % k_dim.dimension == 0
|
|
646
|
+
time0 = data0.shape[0] // k_dim.dimension
|
|
647
|
+
sizes0 = reader.data["sizes"][i]
|
|
648
|
+
assert sizes0.shape == (2,)
|
|
649
|
+
assert sizes0.tolist() == [time0, k_dim.dimension]
|
|
650
|
+
probs0 = reader.data["k_log_probs"][i]
|
|
651
|
+
assert probs0.shape == (time0, k_dim.dimension)
|
|
652
|
+
|
|
653
|
+
|
|
579
654
|
class Old2018HDFDataset(CachedDataset):
|
|
580
655
|
"""
|
|
581
656
|
Copied and adapted from an early RETURNN version:
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