retrainopt 0.2.0__tar.gz

retrainopt-0.2.0/CHANGELOG.md

@@ -0,0 +1,37 @@
+# Changelog
+
+## 0.2.0 — 2026-10-14
+
+### Correctness
+
+- Apply acquisition functions to complete weighted per-stage costs. Combine
+  independent training/loss posterior variances with squared weights.
+- Use zero uncertainty for measured costs, one observed stage-cost incumbent
+  for EI/PI, and the paper's zero-standard-deviation EI/PI convention.
+- Honor an explicit initial-loss baseline even with a nonempty first block.
+- Validate configuration, timeline inputs and evaluated costs instead of
+  silently substituting defaults for invalid values.
+
+### Public API
+
+- Add evaluator injection through `EvaluationProvider` and publicly expose
+  `CandidateEvaluation`.
+- Freeze planner configuration and isolate planner configuration snapshots.
+- Add `PlanResult.weighted_loss_cost`; preserve the raw `loss_cost` field.
+  Serialized results use schema version 2 and versioned metadata.
+
+### Distribution
+
+- Add an algorithm guide, public API reference, migration notes and runnable
+  documentation, plus optional scikit-learn, PyTorch and BoTorch examples.
+- Document source, installed-package and documentation validation, and a
+  staged release procedure.
+
+Approximate plans can change under the corrected acquisition semantics.
+The frozen paper implementation and canonical experiment pin are unchanged.
+
+## 0.1.0 (unpublished)
+
+Initial standalone library with exact and approximate planning, timeline/model
+adapters, and a binary-timeline CLI.
+

retrainopt-0.2.0/CITATION.cff

@@ -0,0 +1,22 @@
+cff-version: 1.2.0
+message: "Please cite RetrainOpt and the paper describing its offline planning algorithms."
+type: software
+title: RetrainOpt
+version: 0.2.0
+authors:
+  - family-names: Yang
+    given-names: Jun
+repository-code: "https://github.com/yangjun42/retrainopt"
+license: Apache-2.0
+preferred-citation:
+  type: conference-paper
+  title: "Automated Retraining for Cost-Optimal ML"
+  authors:
+    - family-names: Yang
+      given-names: Jun
+    - family-names: Mathioudakis
+      given-names: Michael
+  year: 2026
+  conference:
+    name: "ECML PKDD 2026"
+

retrainopt-0.2.0/LICENSE

@@ -0,0 +1,184 @@
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retrainopt-0.2.0/MANIFEST.in

@@ -0,0 +1,13 @@
+include LICENSE
+include README.md
+include CHANGELOG.md
+include CITATION.cff
+include PUBLISHING.md
+include RELEASE_CHECKLIST.md
+recursive-include docs *.md *.py
+include uv.lock
+recursive-include scripts *.py
+recursive-include examples *.py
+recursive-include tests *.py
+global-exclude __pycache__
+global-exclude *.py[cod]

retrainopt-0.2.0/PKG-INFO

@@ -0,0 +1,134 @@
+Metadata-Version: 2.4
+Name: retrainopt
+Version: 0.2.0
+Summary: RetrainOpt - Cost-aware retraining planning
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/yangjun42/retrainopt
+Project-URL: Repository, https://github.com/yangjun42/retrainopt
+Project-URL: Issues, https://github.com/yangjun42/retrainopt/issues
+Project-URL: Documentation, https://yangjun42.github.io/retrainopt/
+Keywords: retraining,model-maintenance,cost-aware,time-sliced-datasets
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Provides-Extra: sklearn
+Requires-Dist: scikit-learn>=1.4.2; extra == "sklearn"
+Provides-Extra: torch
+Requires-Dist: torch>=2.4; extra == "torch"
+Provides-Extra: botorch
+Requires-Dist: botorch>=0.16.1; extra == "botorch"
+Requires-Dist: gpytorch; extra == "botorch"
+Requires-Dist: torch>=2.4; extra == "botorch"
+Dynamic: license-file
+
+# RetrainOpt
+
+Offline planning for **when to retrain a model and how much data to use**,
+balancing training cost and predictive loss.
+
+RetrainOpt provides exact dynamic programming and surrogate-guided approximate
+search over a supplied timeline. It implements the offline core of
+*Automated Retraining for Cost-Optimal ML* (Jun Yang and Michael Mathioudakis,
+2026). It is an algorithm library: deployment, online drift detection and
+experiment orchestration are outside its scope.
+
+## Install
+
+Python 3.10 or later. The core has no mandatory third-party runtime dependencies.
+
+```shell
+python -m pip install retrainopt
+```
+
+Optional integrations:
+
+```shell
+python -m pip install 'retrainopt[sklearn]'
+python -m pip install 'retrainopt[torch]'
+python -m pip install 'retrainopt[botorch]'
+```
+
+## Quick start
+
+```python
+from retrainopt import PlannerConfig, RetrainingPlanner
+from retrainopt.adapters import ArrayTimelineAdapter, PrototypeModelAdapter
+
+timeline = ArrayTimelineAdapter(
+    train_blocks=[
+        [((0.0,), 0), ((1.0,), 1)],
+        [((0.0,), 1), ((1.0,), 0)],
+    ],
+    eval_blocks=[
+        [((0.1,), 0), ((0.9,), 1)],
+        [((0.1,), 1), ((0.9,), 0)],
+    ],
+)
+config = PlannerConfig(
+    n_choices=(1.0,),       # Full block; integer 1 would mean one sample.
+    initial_loss=1.0,      # Explicit initial baseline; no bootstrap fit.
+    time_cost_weight=0.0,  # Ignore wall-clock noise in this small example.
+    loss_cost_weight=1.0,
+)
+result = RetrainingPlanner(timeline, PrototypeModelAdapter(), config).plan("exact")
+print([decision.action.value for decision in result.decisions])
+print(result.total_cost)
+# ['retrain', 'retrain']
+# 0.0
+```
+
+Each train block is the complete available dataset at that time; blocks are
+not accumulated automatically. The planner can inspect the entire timeline,
+including evaluation blocks. These are optimization inputs, so the selected
+plan's cost is not an independent future-performance estimate.
+
+## Choosing a method
+
+| Method | What it does |
+| --- | --- |
+| `exact` | Measures every configured candidate and finds the minimum-cost schedule over that finite candidate set. |
+| `bayes`, `lightweight` backend | Uses a dependency-free nearest-neighbor heuristic to select candidates. |
+| `bayes`, `botorch` backend | Uses optional Gaussian-process surrogates for acquisition-guided search. |
+
+For `bayes`, `estimated_total_cost` is the surrogate estimate, while
+`total_cost` is measured for the selected schedule. Approximate search does not
+guarantee the global optimum. Sequence selection can train more models than
+`bayes_candidates_per_iteration`, which is a minimum target, not a hard budget.
+
+`PlanResult.training_cost` is weighted training cost, `loss_cost` is raw summed
+loss, and `weighted_loss_cost` is the loss contribution to `total_cost`.
+Planning's exploratory fits are not part of the selected schedule's objective.
+
+## Documentation and examples
+
+- [Quick start](https://yangjun42.github.io/retrainopt/quickstart.html), [algorithm semantics](https://yangjun42.github.io/retrainopt/algorithms.html)
+- [Initial models, costs and evaluator injection](https://yangjun42.github.io/retrainopt/evaluation.html)
+- [Optional adapters and CLI](https://yangjun42.github.io/retrainopt/integrations.html), [API](https://yangjun42.github.io/retrainopt/api.html)
+- [Migration from 0.1](https://yangjun42.github.io/retrainopt/migration.html), [changelog](https://github.com/yangjun42/retrainopt/blob/main/CHANGELOG.md)
+- [Development and validation](https://yangjun42.github.io/retrainopt/development.html), [publishing](https://github.com/yangjun42/retrainopt/blob/main/PUBLISHING.md)
+
+```shell
+python examples/minimal_array_timeline.py
+python examples/verify_exact_against_bruteforce.py
+# After installing the corresponding extra:
+python examples/sklearn_timeline.py
+python examples/torch_timeline.py
+python examples/botorch_timeline.py
+```
+
+Version 0.2 corrects acquisition composition and tightens public contracts.
+It does not replace the paper's frozen code or the separate canonical
+`retrainopt-paper-repro` pin `ecml-pkdd-2026-camera-ready-retrainopt`.
+Use [CITATION.cff](https://github.com/yangjun42/retrainopt/blob/main/CITATION.cff) to cite this software and the paper.
+
+Apache-2.0 licensed. Source and issues:
+[github.com/yangjun42/retrainopt](https://github.com/yangjun42/retrainopt).

retrainopt-0.2.0/PUBLISHING.md

@@ -0,0 +1,83 @@
+# Publishing RetrainOpt
+
+Publishing uses GitHub Actions and PyPI Trusted Publishing (OIDC). A local
+build or green pull request does not upload a release. The publishing workflow
+runs only on `v*` tags, checks that the tag exactly matches `pyproject.toml`, and
+validates that tagged revision before uploading its artifacts.
+
+## Repository and publisher setup
+
+The account owner must configure these external settings before publication:
+
+1. On TestPyPI and PyPI, configure the project `retrainopt` (or a pending
+   publisher for a new project) with repository `yangjun42/retrainopt`, workflow
+   `publish.yml`, and GitHub environment `testpypi` or `pypi`, respectively.
+2. Create the corresponding GitHub environments and configure their protection
+   rules. Restrict production publishing to reviewed release tags.
+3. Enable GitHub Pages with GitHub Actions as its source. Documentation deploys
+   through the `github-pages` environment.
+4. Confirm the workflows are enabled and that the publisher names, repository
+   ownership and environment names match exactly.
+
+The checked-in workflow expects this setup; it does not create publisher
+accounts. It does not require a `PYPI_API_TOKEN` secret. Do not replace the
+Trusted Publishing configuration with an unreviewed manual upload workaround.
+
+## Validate before tagging
+
+Use the locked groups and commands in [Development](docs/development.md).
+The release checks cover:
+
+- core tests and optional sklearn/Torch/BoTorch integrations;
+- exact-vs-exhaustive verification and acquisition regression cases;
+- warning-free HTML and doctest builds;
+- built wheel and source-distribution validation;
+- installation and smoke execution outside the source checkout.
+
+Review [CHANGELOG.md](CHANGELOG.md), migration notes and `CITATION.cff`. Version
+metadata must match the intended release. Keep the paper's frozen reproduction
+pin unchanged.
+
+## Release candidate
+
+For a candidate such as `0.2.0rc1`, set the package version to `0.2.0rc1` and use
+the corresponding tag `v0.2.0rc1`. After the reviewed commit is ready:
+
+```shell
+git tag -a v0.2.0rc1 -m 'RetrainOpt 0.2.0rc1'
+git push origin v0.2.0rc1
+```
+
+The workflow routes `rc` versions to **TestPyPI** using environment `testpypi`.
+It reuses the validated distributions, verifies their checksums, uploads them,
+then tests an anonymous installation from that index. Only after verification
+succeeds does it create the GitHub prerelease with artifacts and checksums.
+
+This core-only manual verification is useful after the workflow completes:
+
+```shell
+python -m pip install --no-deps --index-url https://test.pypi.org/simple/ 'retrainopt==0.2.0rc1'
+python -c 'import retrainopt; print(retrainopt.__version__)'
+```
+
+Use a clean environment and run outside the source checkout. TestPyPI is for
+the candidate package; optional integration dependencies should come from
+their normal package indexes through the locked validation environment.
+
+## Final release
+
+After candidate verification, update the package and citation version to
+`0.2.0`, refresh the lock as needed, and merge the reviewed release changes to
+`main`. Create and push `v0.2.0` from that revision. The workflow requires a
+stable release tag to be an ancestor of `origin/main`.
+
+Stable versions route to **PyPI** using environment `pypi`. Upload, anonymous
+index-install verification, and GitHub release creation follow the same order
+as the candidate. The documentation workflow deploys `main` on a push or an
+explicit dispatch targeting `main`; release uploads do not independently
+publish documentation.
+
+If publisher configuration is missing or a check fails, preserve the failed
+run and artifacts and fix the cause. Report publication as incomplete. PyPI
+versions are not overwriteable; use a new candidate version for changed
+candidate artifacts rather than moving an already published tag.

retrainopt-0.2.0/README.md

@@ -0,0 +1,102 @@
+# RetrainOpt
+
+Offline planning for **when to retrain a model and how much data to use**,
+balancing training cost and predictive loss.
+
+RetrainOpt provides exact dynamic programming and surrogate-guided approximate
+search over a supplied timeline. It implements the offline core of
+*Automated Retraining for Cost-Optimal ML* (Jun Yang and Michael Mathioudakis,
+2026). It is an algorithm library: deployment, online drift detection and
+experiment orchestration are outside its scope.
+
+## Install
+
+Python 3.10 or later. The core has no mandatory third-party runtime dependencies.
+
+```shell
+python -m pip install retrainopt
+```
+
+Optional integrations:
+
+```shell
+python -m pip install 'retrainopt[sklearn]'
+python -m pip install 'retrainopt[torch]'
+python -m pip install 'retrainopt[botorch]'
+```
+
+## Quick start
+
+```python
+from retrainopt import PlannerConfig, RetrainingPlanner
+from retrainopt.adapters import ArrayTimelineAdapter, PrototypeModelAdapter
+
+timeline = ArrayTimelineAdapter(
+    train_blocks=[
+        [((0.0,), 0), ((1.0,), 1)],
+        [((0.0,), 1), ((1.0,), 0)],
+    ],
+    eval_blocks=[
+        [((0.1,), 0), ((0.9,), 1)],
+        [((0.1,), 1), ((0.9,), 0)],
+    ],
+)
+config = PlannerConfig(
+    n_choices=(1.0,),       # Full block; integer 1 would mean one sample.
+    initial_loss=1.0,      # Explicit initial baseline; no bootstrap fit.
+    time_cost_weight=0.0,  # Ignore wall-clock noise in this small example.
+    loss_cost_weight=1.0,
+)
+result = RetrainingPlanner(timeline, PrototypeModelAdapter(), config).plan("exact")
+print([decision.action.value for decision in result.decisions])
+print(result.total_cost)
+# ['retrain', 'retrain']
+# 0.0
+```
+
+Each train block is the complete available dataset at that time; blocks are
+not accumulated automatically. The planner can inspect the entire timeline,
+including evaluation blocks. These are optimization inputs, so the selected
+plan's cost is not an independent future-performance estimate.
+
+## Choosing a method
+
+| Method | What it does |
+| --- | --- |
+| `exact` | Measures every configured candidate and finds the minimum-cost schedule over that finite candidate set. |
+| `bayes`, `lightweight` backend | Uses a dependency-free nearest-neighbor heuristic to select candidates. |
+| `bayes`, `botorch` backend | Uses optional Gaussian-process surrogates for acquisition-guided search. |
+
+For `bayes`, `estimated_total_cost` is the surrogate estimate, while
+`total_cost` is measured for the selected schedule. Approximate search does not
+guarantee the global optimum. Sequence selection can train more models than
+`bayes_candidates_per_iteration`, which is a minimum target, not a hard budget.
+
+`PlanResult.training_cost` is weighted training cost, `loss_cost` is raw summed
+loss, and `weighted_loss_cost` is the loss contribution to `total_cost`.
+Planning's exploratory fits are not part of the selected schedule's objective.
+
+## Documentation and examples
+
+- [Quick start](https://yangjun42.github.io/retrainopt/quickstart.html), [algorithm semantics](https://yangjun42.github.io/retrainopt/algorithms.html)
+- [Initial models, costs and evaluator injection](https://yangjun42.github.io/retrainopt/evaluation.html)
+- [Optional adapters and CLI](https://yangjun42.github.io/retrainopt/integrations.html), [API](https://yangjun42.github.io/retrainopt/api.html)
+- [Migration from 0.1](https://yangjun42.github.io/retrainopt/migration.html), [changelog](https://github.com/yangjun42/retrainopt/blob/main/CHANGELOG.md)
+- [Development and validation](https://yangjun42.github.io/retrainopt/development.html), [publishing](https://github.com/yangjun42/retrainopt/blob/main/PUBLISHING.md)
+
+```shell
+python examples/minimal_array_timeline.py
+python examples/verify_exact_against_bruteforce.py
+# After installing the corresponding extra:
+python examples/sklearn_timeline.py
+python examples/torch_timeline.py
+python examples/botorch_timeline.py
+```
+
+Version 0.2 corrects acquisition composition and tightens public contracts.
+It does not replace the paper's frozen code or the separate canonical
+`retrainopt-paper-repro` pin `ecml-pkdd-2026-camera-ready-retrainopt`.
+Use [CITATION.cff](https://github.com/yangjun42/retrainopt/blob/main/CITATION.cff) to cite this software and the paper.
+
+Apache-2.0 licensed. Source and issues:
+[github.com/yangjun42/retrainopt](https://github.com/yangjun42/retrainopt).

retrainopt-0.2.0/RELEASE_CHECKLIST.md

@@ -0,0 +1,40 @@
+# Release checklist
+
+## Source and behavior
+
+- [ ] Release changes reviewed; working tree and tag identify the intended revision.
+- [ ] Package version, citation version and tag agree.
+- [ ] Changelog and migration notes describe acquisition and initial-model changes.
+- [ ] Exact DP passes independent exhaustive checks on small fixtures.
+- [ ] Whole-stage acquisition, weighted variance, observed entries and zero-variance EI/PI pass regression checks.
+- [ ] Evaluator, configuration, data and cost contracts pass tests.
+- [ ] Paper reproduction tag/pin and frozen artifacts remain unchanged.
+
+## Distribution and documentation
+
+- [ ] Locked test/build/docs groups resolve and validate.
+- [ ] Minimal example and optional sklearn/Torch/BoTorch examples pass.
+- [ ] Sphinx HTML and doctests build without warnings.
+- [ ] Wheel and sdist build, metadata checks pass, and checksums are recorded.
+- [ ] Wheel and sdist-derived installations run outside the source checkout.
+- [ ] Public API, assumptions, cost accounting and limitations are documented.
+
+## External configuration
+
+- [ ] TestPyPI Trusted Publisher matches `publish.yml` and `testpypi`.
+- [ ] PyPI Trusted Publisher matches `publish.yml` and `pypi`.
+- [ ] GitHub environments and protection rules are configured.
+- [ ] GitHub Pages uses Actions and its deployment environment is ready.
+
+## Publication
+
+- [ ] Candidate tag exactly matches the `rc` package version.
+- [ ] Tagged validation and TestPyPI upload succeed.
+- [ ] Anonymous TestPyPI install succeeds; GitHub prerelease contains verified artifacts/checksums.
+- [ ] Final version is reviewed on `main`; stable tag matches package version.
+- [ ] PyPI upload and anonymous PyPI installation succeed.
+- [ ] GitHub release contains verified artifacts/checksums and links to migration notes.
+- [ ] Documentation deployment succeeds and shows the intended release.
+
+Unchecked publisher/index/deployment steps mean publication is pending, even
+when local validation is complete. See [PUBLISHING.md](PUBLISHING.md).