research-plugins 1.0.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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  1. research_plugins-1.0.0/LICENSE +21 -0
  2. research_plugins-1.0.0/MANIFEST.in +4 -0
  3. research_plugins-1.0.0/PKG-INFO +222 -0
  4. research_plugins-1.0.0/README.md +204 -0
  5. research_plugins-1.0.0/curated/analysis/README.md +64 -0
  6. research_plugins-1.0.0/curated/domains/README.md +104 -0
  7. research_plugins-1.0.0/curated/literature/README.md +53 -0
  8. research_plugins-1.0.0/curated/research/README.md +62 -0
  9. research_plugins-1.0.0/curated/tools/README.md +87 -0
  10. research_plugins-1.0.0/curated/writing/README.md +61 -0
  11. research_plugins-1.0.0/mcp-configs/academic-db/ChatSpatial.json +17 -0
  12. research_plugins-1.0.0/mcp-configs/academic-db/academia-mcp.json +17 -0
  13. research_plugins-1.0.0/mcp-configs/academic-db/academic-paper-explorer.json +17 -0
  14. research_plugins-1.0.0/mcp-configs/academic-db/academic-search-mcp-server.json +17 -0
  15. research_plugins-1.0.0/mcp-configs/academic-db/agentinterviews-mcp.json +17 -0
  16. research_plugins-1.0.0/mcp-configs/academic-db/all-in-mcp.json +17 -0
  17. research_plugins-1.0.0/mcp-configs/academic-db/apple-health-mcp.json +17 -0
  18. research_plugins-1.0.0/mcp-configs/academic-db/arxiv-latex-mcp.json +17 -0
  19. research_plugins-1.0.0/mcp-configs/academic-db/arxiv-mcp-server.json +17 -0
  20. research_plugins-1.0.0/mcp-configs/academic-db/bgpt-mcp.json +17 -0
  21. research_plugins-1.0.0/mcp-configs/academic-db/biomcp.json +17 -0
  22. research_plugins-1.0.0/mcp-configs/academic-db/biothings-mcp.json +17 -0
  23. research_plugins-1.0.0/mcp-configs/academic-db/catalysishub-mcp-server.json +17 -0
  24. research_plugins-1.0.0/mcp-configs/academic-db/clinicaltrialsgov-mcp-server.json +17 -0
  25. research_plugins-1.0.0/mcp-configs/academic-db/deep-research-mcp.json +17 -0
  26. research_plugins-1.0.0/mcp-configs/academic-db/dicom-mcp.json +17 -0
  27. research_plugins-1.0.0/mcp-configs/academic-db/enrichr-mcp-server.json +17 -0
  28. research_plugins-1.0.0/mcp-configs/academic-db/fec-mcp-server.json +17 -0
  29. research_plugins-1.0.0/mcp-configs/academic-db/fhir-mcp-server-themomentum.json +17 -0
  30. research_plugins-1.0.0/mcp-configs/academic-db/fhir-mcp.json +19 -0
  31. research_plugins-1.0.0/mcp-configs/academic-db/gget-mcp.json +17 -0
  32. research_plugins-1.0.0/mcp-configs/academic-db/google-researcher-mcp.json +17 -0
  33. research_plugins-1.0.0/mcp-configs/academic-db/idea-reality-mcp.json +17 -0
  34. research_plugins-1.0.0/mcp-configs/academic-db/legiscan-mcp.json +19 -0
  35. research_plugins-1.0.0/mcp-configs/academic-db/lex.json +17 -0
  36. research_plugins-1.0.0/mcp-configs/ai-platform/Adaptive-Graph-of-Thoughts-MCP-server.json +17 -0
  37. research_plugins-1.0.0/mcp-configs/ai-platform/ai-counsel.json +17 -0
  38. research_plugins-1.0.0/mcp-configs/ai-platform/atlas-mcp-server.json +17 -0
  39. research_plugins-1.0.0/mcp-configs/ai-platform/counsel-mcp.json +17 -0
  40. research_plugins-1.0.0/mcp-configs/ai-platform/cross-llm-mcp.json +17 -0
  41. research_plugins-1.0.0/mcp-configs/ai-platform/gptr-mcp.json +17 -0
  42. research_plugins-1.0.0/mcp-configs/browser/decipher-research-agent.json +17 -0
  43. research_plugins-1.0.0/mcp-configs/browser/deep-research.json +17 -0
  44. research_plugins-1.0.0/mcp-configs/browser/everything-claude-code.json +17 -0
  45. research_plugins-1.0.0/mcp-configs/browser/gpt-researcher.json +17 -0
  46. research_plugins-1.0.0/mcp-configs/browser/heurist-agent-framework.json +17 -0
  47. research_plugins-1.0.0/mcp-configs/data-platform/4everland-hosting-mcp.json +17 -0
  48. research_plugins-1.0.0/mcp-configs/data-platform/context-keeper.json +17 -0
  49. research_plugins-1.0.0/mcp-configs/data-platform/context7.json +19 -0
  50. research_plugins-1.0.0/mcp-configs/data-platform/contextstream-mcp.json +17 -0
  51. research_plugins-1.0.0/mcp-configs/data-platform/email-mcp.json +17 -0
  52. research_plugins-1.0.0/mcp-configs/note-knowledge/ApeRAG.json +17 -0
  53. research_plugins-1.0.0/mcp-configs/note-knowledge/In-Memoria.json +17 -0
  54. research_plugins-1.0.0/mcp-configs/note-knowledge/agent-memory.json +17 -0
  55. research_plugins-1.0.0/mcp-configs/note-knowledge/aimemo.json +17 -0
  56. research_plugins-1.0.0/mcp-configs/note-knowledge/biel-mcp.json +19 -0
  57. research_plugins-1.0.0/mcp-configs/note-knowledge/cognee.json +17 -0
  58. research_plugins-1.0.0/mcp-configs/note-knowledge/context-awesome.json +17 -0
  59. research_plugins-1.0.0/mcp-configs/note-knowledge/context-mcp.json +17 -0
  60. research_plugins-1.0.0/mcp-configs/note-knowledge/conversation-handoff-mcp.json +17 -0
  61. research_plugins-1.0.0/mcp-configs/note-knowledge/cortex.json +17 -0
  62. research_plugins-1.0.0/mcp-configs/note-knowledge/devrag.json +17 -0
  63. research_plugins-1.0.0/mcp-configs/note-knowledge/easy-obsidian-mcp.json +17 -0
  64. research_plugins-1.0.0/mcp-configs/note-knowledge/engram.json +17 -0
  65. research_plugins-1.0.0/mcp-configs/note-knowledge/gnosis-mcp.json +17 -0
  66. research_plugins-1.0.0/mcp-configs/note-knowledge/graphlit-mcp-server.json +19 -0
  67. research_plugins-1.0.0/mcp-configs/reference-mgr/arxiv-cli.json +17 -0
  68. research_plugins-1.0.0/mcp-configs/reference-mgr/arxiv-search-mcp.json +17 -0
  69. research_plugins-1.0.0/mcp-configs/reference-mgr/chiken.json +17 -0
  70. research_plugins-1.0.0/mcp-configs/reference-mgr/claude-scholar.json +17 -0
  71. research_plugins-1.0.0/mcp-configs/reference-mgr/devonthink-mcp.json +17 -0
  72. research_plugins-1.0.0/mcp-configs/registry.json +447 -0
  73. research_plugins-1.0.0/pyproject.toml +32 -0
  74. research_plugins-1.0.0/research_plugins/__init__.py +3 -0
  75. research_plugins-1.0.0/research_plugins/cli.py +55 -0
  76. research_plugins-1.0.0/research_plugins.egg-info/PKG-INFO +222 -0
  77. research_plugins-1.0.0/research_plugins.egg-info/SOURCES.txt +252 -0
  78. research_plugins-1.0.0/research_plugins.egg-info/dependency_links.txt +1 -0
  79. research_plugins-1.0.0/research_plugins.egg-info/entry_points.txt +2 -0
  80. research_plugins-1.0.0/research_plugins.egg-info/top_level.txt +1 -0
  81. research_plugins-1.0.0/setup.cfg +4 -0
  82. research_plugins-1.0.0/skills/analysis/dataviz/color-accessibility-guide/SKILL.md +230 -0
  83. research_plugins-1.0.0/skills/analysis/dataviz/geospatial-viz-guide/SKILL.md +218 -0
  84. research_plugins-1.0.0/skills/analysis/dataviz/interactive-viz-guide/SKILL.md +287 -0
  85. research_plugins-1.0.0/skills/analysis/dataviz/network-visualization-guide/SKILL.md +195 -0
  86. research_plugins-1.0.0/skills/analysis/dataviz/publication-figures-guide/SKILL.md +238 -0
  87. research_plugins-1.0.0/skills/analysis/dataviz/python-dataviz-guide/SKILL.md +195 -0
  88. research_plugins-1.0.0/skills/analysis/econometrics/causal-inference-guide/SKILL.md +197 -0
  89. research_plugins-1.0.0/skills/analysis/econometrics/iv-regression-guide/SKILL.md +198 -0
  90. research_plugins-1.0.0/skills/analysis/econometrics/panel-data-guide/SKILL.md +274 -0
  91. research_plugins-1.0.0/skills/analysis/econometrics/robustness-checks/SKILL.md +250 -0
  92. research_plugins-1.0.0/skills/analysis/econometrics/stata-regression/SKILL.md +117 -0
  93. research_plugins-1.0.0/skills/analysis/econometrics/time-series-guide/SKILL.md +235 -0
  94. research_plugins-1.0.0/skills/analysis/statistics/bayesian-statistics-guide/SKILL.md +221 -0
  95. research_plugins-1.0.0/skills/analysis/statistics/hypothesis-testing-guide/SKILL.md +210 -0
  96. research_plugins-1.0.0/skills/analysis/statistics/meta-analysis-guide/SKILL.md +206 -0
  97. research_plugins-1.0.0/skills/analysis/statistics/nonparametric-tests-guide/SKILL.md +221 -0
  98. research_plugins-1.0.0/skills/analysis/statistics/power-analysis-guide/SKILL.md +240 -0
  99. research_plugins-1.0.0/skills/analysis/statistics/sem-guide/SKILL.md +231 -0
  100. research_plugins-1.0.0/skills/analysis/statistics/survival-analysis-guide/SKILL.md +195 -0
  101. research_plugins-1.0.0/skills/analysis/wrangling/missing-data-handling/SKILL.md +224 -0
  102. research_plugins-1.0.0/skills/analysis/wrangling/pandas-data-wrangling/SKILL.md +242 -0
  103. research_plugins-1.0.0/skills/analysis/wrangling/questionnaire-design-guide/SKILL.md +234 -0
  104. research_plugins-1.0.0/skills/analysis/wrangling/text-mining-guide/SKILL.md +225 -0
  105. research_plugins-1.0.0/skills/domains/ai-ml/computer-vision-guide/SKILL.md +213 -0
  106. research_plugins-1.0.0/skills/domains/ai-ml/deep-learning-papers-guide/SKILL.md +200 -0
  107. research_plugins-1.0.0/skills/domains/ai-ml/llm-evaluation-guide/SKILL.md +194 -0
  108. research_plugins-1.0.0/skills/domains/ai-ml/prompt-engineering-research/SKILL.md +233 -0
  109. research_plugins-1.0.0/skills/domains/ai-ml/reinforcement-learning-guide/SKILL.md +254 -0
  110. research_plugins-1.0.0/skills/domains/ai-ml/transformer-architecture-guide/SKILL.md +233 -0
  111. research_plugins-1.0.0/skills/domains/biomedical/clinical-research-guide/SKILL.md +232 -0
  112. research_plugins-1.0.0/skills/domains/biomedical/clinicaltrials-api/SKILL.md +177 -0
  113. research_plugins-1.0.0/skills/domains/biomedical/epidemiology-guide/SKILL.md +200 -0
  114. research_plugins-1.0.0/skills/domains/biomedical/genomics-analysis-guide/SKILL.md +270 -0
  115. research_plugins-1.0.0/skills/domains/business/market-analysis-guide/SKILL.md +112 -0
  116. research_plugins-1.0.0/skills/domains/business/strategic-management-guide/SKILL.md +154 -0
  117. research_plugins-1.0.0/skills/domains/chemistry/computational-chemistry-guide/SKILL.md +266 -0
  118. research_plugins-1.0.0/skills/domains/chemistry/retrosynthesis-guide/SKILL.md +215 -0
  119. research_plugins-1.0.0/skills/domains/cs/algorithms-complexity-guide/SKILL.md +194 -0
  120. research_plugins-1.0.0/skills/domains/cs/dblp-api/SKILL.md +129 -0
  121. research_plugins-1.0.0/skills/domains/cs/software-engineering-research/SKILL.md +218 -0
  122. research_plugins-1.0.0/skills/domains/ecology/biodiversity-data-guide/SKILL.md +296 -0
  123. research_plugins-1.0.0/skills/domains/ecology/conservation-biology-guide/SKILL.md +198 -0
  124. research_plugins-1.0.0/skills/domains/ecology/gbif-api/SKILL.md +158 -0
  125. research_plugins-1.0.0/skills/domains/ecology/inaturalist-api/SKILL.md +173 -0
  126. research_plugins-1.0.0/skills/domains/economics/behavioral-economics-guide/SKILL.md +239 -0
  127. research_plugins-1.0.0/skills/domains/economics/development-economics-guide/SKILL.md +181 -0
  128. research_plugins-1.0.0/skills/domains/economics/fred-api/SKILL.md +189 -0
  129. research_plugins-1.0.0/skills/domains/education/curriculum-design-guide/SKILL.md +144 -0
  130. research_plugins-1.0.0/skills/domains/education/learning-science-guide/SKILL.md +150 -0
  131. research_plugins-1.0.0/skills/domains/finance/financial-data-analysis/SKILL.md +152 -0
  132. research_plugins-1.0.0/skills/domains/finance/quantitative-finance-guide/SKILL.md +151 -0
  133. research_plugins-1.0.0/skills/domains/geoscience/climate-science-guide/SKILL.md +158 -0
  134. research_plugins-1.0.0/skills/domains/geoscience/gis-remote-sensing-guide/SKILL.md +129 -0
  135. research_plugins-1.0.0/skills/domains/humanities/digital-humanities-guide/SKILL.md +181 -0
  136. research_plugins-1.0.0/skills/domains/humanities/philosophy-research-guide/SKILL.md +148 -0
  137. research_plugins-1.0.0/skills/domains/law/courtlistener-api/SKILL.md +213 -0
  138. research_plugins-1.0.0/skills/domains/law/legal-research-guide/SKILL.md +250 -0
  139. research_plugins-1.0.0/skills/domains/math/linear-algebra-applications/SKILL.md +227 -0
  140. research_plugins-1.0.0/skills/domains/math/numerical-methods-guide/SKILL.md +236 -0
  141. research_plugins-1.0.0/skills/domains/math/oeis-api/SKILL.md +158 -0
  142. research_plugins-1.0.0/skills/domains/pharma/clinical-pharmacology-guide/SKILL.md +165 -0
  143. research_plugins-1.0.0/skills/domains/pharma/drug-development-guide/SKILL.md +177 -0
  144. research_plugins-1.0.0/skills/domains/physics/computational-physics-guide/SKILL.md +300 -0
  145. research_plugins-1.0.0/skills/domains/physics/nasa-ads-api/SKILL.md +150 -0
  146. research_plugins-1.0.0/skills/domains/physics/quantum-computing-guide/SKILL.md +234 -0
  147. research_plugins-1.0.0/skills/domains/social-science/social-research-methods/SKILL.md +194 -0
  148. research_plugins-1.0.0/skills/domains/social-science/survey-research-guide/SKILL.md +182 -0
  149. research_plugins-1.0.0/skills/literature/discovery/citation-alert-guide/SKILL.md +154 -0
  150. research_plugins-1.0.0/skills/literature/discovery/conference-proceedings-guide/SKILL.md +142 -0
  151. research_plugins-1.0.0/skills/literature/discovery/literature-mapping-guide/SKILL.md +175 -0
  152. research_plugins-1.0.0/skills/literature/discovery/paper-tracking-guide/SKILL.md +211 -0
  153. research_plugins-1.0.0/skills/literature/discovery/rss-paper-feeds/SKILL.md +214 -0
  154. research_plugins-1.0.0/skills/literature/discovery/semantic-scholar-recs-guide/SKILL.md +164 -0
  155. research_plugins-1.0.0/skills/literature/fulltext/doaj-api/SKILL.md +120 -0
  156. research_plugins-1.0.0/skills/literature/fulltext/interlibrary-loan-guide/SKILL.md +163 -0
  157. research_plugins-1.0.0/skills/literature/fulltext/open-access-guide/SKILL.md +183 -0
  158. research_plugins-1.0.0/skills/literature/fulltext/pmc-oai-api/SKILL.md +184 -0
  159. research_plugins-1.0.0/skills/literature/fulltext/preprint-servers-guide/SKILL.md +128 -0
  160. research_plugins-1.0.0/skills/literature/fulltext/repository-harvesting-guide/SKILL.md +207 -0
  161. research_plugins-1.0.0/skills/literature/fulltext/unpaywall-api/SKILL.md +113 -0
  162. research_plugins-1.0.0/skills/literature/metadata/altmetrics-guide/SKILL.md +132 -0
  163. research_plugins-1.0.0/skills/literature/metadata/citation-network-guide/SKILL.md +236 -0
  164. research_plugins-1.0.0/skills/literature/metadata/crossref-api/SKILL.md +133 -0
  165. research_plugins-1.0.0/skills/literature/metadata/datacite-api/SKILL.md +126 -0
  166. research_plugins-1.0.0/skills/literature/metadata/doi-resolution-guide/SKILL.md +168 -0
  167. research_plugins-1.0.0/skills/literature/metadata/h-index-guide/SKILL.md +183 -0
  168. research_plugins-1.0.0/skills/literature/metadata/journal-metrics-guide/SKILL.md +188 -0
  169. research_plugins-1.0.0/skills/literature/metadata/opencitations-api/SKILL.md +128 -0
  170. research_plugins-1.0.0/skills/literature/metadata/orcid-api/SKILL.md +136 -0
  171. research_plugins-1.0.0/skills/literature/metadata/orcid-integration-guide/SKILL.md +178 -0
  172. research_plugins-1.0.0/skills/literature/search/arxiv-api/SKILL.md +95 -0
  173. research_plugins-1.0.0/skills/literature/search/biorxiv-api/SKILL.md +123 -0
  174. research_plugins-1.0.0/skills/literature/search/boolean-search-guide/SKILL.md +199 -0
  175. research_plugins-1.0.0/skills/literature/search/citation-chaining-guide/SKILL.md +148 -0
  176. research_plugins-1.0.0/skills/literature/search/database-comparison-guide/SKILL.md +100 -0
  177. research_plugins-1.0.0/skills/literature/search/europe-pmc-api/SKILL.md +120 -0
  178. research_plugins-1.0.0/skills/literature/search/google-scholar-guide/SKILL.md +182 -0
  179. research_plugins-1.0.0/skills/literature/search/mesh-terms-guide/SKILL.md +164 -0
  180. research_plugins-1.0.0/skills/literature/search/openalex-api/SKILL.md +134 -0
  181. research_plugins-1.0.0/skills/literature/search/pubmed-api/SKILL.md +130 -0
  182. research_plugins-1.0.0/skills/literature/search/scientify-literature-survey/SKILL.md +203 -0
  183. research_plugins-1.0.0/skills/literature/search/semantic-scholar-api/SKILL.md +134 -0
  184. research_plugins-1.0.0/skills/literature/search/systematic-search-strategy/SKILL.md +214 -0
  185. research_plugins-1.0.0/skills/research/automation/ai-scientist-guide/SKILL.md +228 -0
  186. research_plugins-1.0.0/skills/research/automation/data-collection-automation/SKILL.md +248 -0
  187. research_plugins-1.0.0/skills/research/automation/research-workflow-automation/SKILL.md +266 -0
  188. research_plugins-1.0.0/skills/research/deep-research/meta-synthesis-guide/SKILL.md +174 -0
  189. research_plugins-1.0.0/skills/research/deep-research/research-cog/SKILL.md +153 -0
  190. research_plugins-1.0.0/skills/research/deep-research/scoping-review-guide/SKILL.md +217 -0
  191. research_plugins-1.0.0/skills/research/deep-research/systematic-review-guide/SKILL.md +250 -0
  192. research_plugins-1.0.0/skills/research/funding/figshare-api/SKILL.md +163 -0
  193. research_plugins-1.0.0/skills/research/funding/grant-writing-guide/SKILL.md +233 -0
  194. research_plugins-1.0.0/skills/research/funding/nsf-grant-guide/SKILL.md +206 -0
  195. research_plugins-1.0.0/skills/research/funding/open-science-guide/SKILL.md +255 -0
  196. research_plugins-1.0.0/skills/research/funding/zenodo-api/SKILL.md +174 -0
  197. research_plugins-1.0.0/skills/research/methodology/action-research-guide/SKILL.md +201 -0
  198. research_plugins-1.0.0/skills/research/methodology/experimental-design-guide/SKILL.md +236 -0
  199. research_plugins-1.0.0/skills/research/methodology/grad-school-guide/SKILL.md +182 -0
  200. research_plugins-1.0.0/skills/research/methodology/grounded-theory-guide/SKILL.md +171 -0
  201. research_plugins-1.0.0/skills/research/methodology/mixed-methods-guide/SKILL.md +208 -0
  202. research_plugins-1.0.0/skills/research/methodology/qualitative-research-guide/SKILL.md +234 -0
  203. research_plugins-1.0.0/skills/research/methodology/scientify-idea-generation/SKILL.md +222 -0
  204. research_plugins-1.0.0/skills/research/paper-review/paper-reading-assistant/SKILL.md +266 -0
  205. research_plugins-1.0.0/skills/research/paper-review/peer-review-guide/SKILL.md +227 -0
  206. research_plugins-1.0.0/skills/research/paper-review/rebuttal-writing-guide/SKILL.md +185 -0
  207. research_plugins-1.0.0/skills/research/paper-review/scientify-write-review-paper/SKILL.md +209 -0
  208. research_plugins-1.0.0/skills/tools/code-exec/jupyter-notebook-guide/SKILL.md +178 -0
  209. research_plugins-1.0.0/skills/tools/code-exec/python-reproducibility-guide/SKILL.md +341 -0
  210. research_plugins-1.0.0/skills/tools/code-exec/r-reproducibility-guide/SKILL.md +236 -0
  211. research_plugins-1.0.0/skills/tools/code-exec/sandbox-execution-guide/SKILL.md +221 -0
  212. research_plugins-1.0.0/skills/tools/diagram/mermaid-diagram-guide/SKILL.md +269 -0
  213. research_plugins-1.0.0/skills/tools/diagram/plantuml-guide/SKILL.md +397 -0
  214. research_plugins-1.0.0/skills/tools/diagram/scientific-illustration-guide/SKILL.md +225 -0
  215. research_plugins-1.0.0/skills/tools/document/anystyle-api/SKILL.md +199 -0
  216. research_plugins-1.0.0/skills/tools/document/grobid-pdf-parsing/SKILL.md +294 -0
  217. research_plugins-1.0.0/skills/tools/document/markdown-academic-guide/SKILL.md +217 -0
  218. research_plugins-1.0.0/skills/tools/document/pdf-extraction-guide/SKILL.md +321 -0
  219. research_plugins-1.0.0/skills/tools/knowledge-graph/knowledge-graph-construction/SKILL.md +306 -0
  220. research_plugins-1.0.0/skills/tools/knowledge-graph/ontology-design-guide/SKILL.md +214 -0
  221. research_plugins-1.0.0/skills/tools/knowledge-graph/rag-methodology-guide/SKILL.md +325 -0
  222. research_plugins-1.0.0/skills/tools/ocr-translate/formula-recognition-guide/SKILL.md +367 -0
  223. research_plugins-1.0.0/skills/tools/ocr-translate/handwriting-recognition-guide/SKILL.md +211 -0
  224. research_plugins-1.0.0/skills/tools/ocr-translate/latex-ocr-guide/SKILL.md +204 -0
  225. research_plugins-1.0.0/skills/tools/ocr-translate/multilingual-research-guide/SKILL.md +234 -0
  226. research_plugins-1.0.0/skills/tools/scraping/academic-web-scraping/SKILL.md +326 -0
  227. research_plugins-1.0.0/skills/tools/scraping/api-data-collection-guide/SKILL.md +301 -0
  228. research_plugins-1.0.0/skills/tools/scraping/web-scraping-ethics-guide/SKILL.md +250 -0
  229. research_plugins-1.0.0/skills/writing/citation/bibtex-management-guide/SKILL.md +246 -0
  230. research_plugins-1.0.0/skills/writing/citation/citation-style-guide/SKILL.md +248 -0
  231. research_plugins-1.0.0/skills/writing/citation/reference-manager-comparison/SKILL.md +208 -0
  232. research_plugins-1.0.0/skills/writing/citation/zotero-api/SKILL.md +188 -0
  233. research_plugins-1.0.0/skills/writing/composition/abstract-writing-guide/SKILL.md +188 -0
  234. research_plugins-1.0.0/skills/writing/composition/discussion-writing-guide/SKILL.md +194 -0
  235. research_plugins-1.0.0/skills/writing/composition/introduction-writing-guide/SKILL.md +194 -0
  236. research_plugins-1.0.0/skills/writing/composition/literature-review-writing/SKILL.md +196 -0
  237. research_plugins-1.0.0/skills/writing/composition/methods-section-guide/SKILL.md +185 -0
  238. research_plugins-1.0.0/skills/writing/composition/response-to-reviewers/SKILL.md +215 -0
  239. research_plugins-1.0.0/skills/writing/composition/scientific-writing-guide/SKILL.md +152 -0
  240. research_plugins-1.0.0/skills/writing/latex/bibliography-management-guide/SKILL.md +206 -0
  241. research_plugins-1.0.0/skills/writing/latex/latex-drawing-guide/SKILL.md +234 -0
  242. research_plugins-1.0.0/skills/writing/latex/latex-ecosystem-guide/SKILL.md +240 -0
  243. research_plugins-1.0.0/skills/writing/latex/math-typesetting-guide/SKILL.md +231 -0
  244. research_plugins-1.0.0/skills/writing/latex/overleaf-collaboration-guide/SKILL.md +211 -0
  245. research_plugins-1.0.0/skills/writing/latex/tikz-diagrams-guide/SKILL.md +211 -0
  246. research_plugins-1.0.0/skills/writing/polish/academic-translation-guide/SKILL.md +175 -0
  247. research_plugins-1.0.0/skills/writing/polish/academic-writing-refiner/SKILL.md +143 -0
  248. research_plugins-1.0.0/skills/writing/polish/ai-writing-humanizer/SKILL.md +178 -0
  249. research_plugins-1.0.0/skills/writing/polish/grammar-checker-guide/SKILL.md +184 -0
  250. research_plugins-1.0.0/skills/writing/polish/plagiarism-detection-guide/SKILL.md +167 -0
  251. research_plugins-1.0.0/skills/writing/templates/beamer-presentation-guide/SKILL.md +263 -0
  252. research_plugins-1.0.0/skills/writing/templates/conference-paper-template/SKILL.md +219 -0
  253. research_plugins-1.0.0/skills/writing/templates/thesis-template-guide/SKILL.md +200 -0
  254. research_plugins-1.0.0/skills/writing/templates/thesis-writing-guide/SKILL.md +220 -0
@@ -0,0 +1,21 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2026 Wentor AI
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
@@ -0,0 +1,4 @@
1
+ recursive-include skills *.md
2
+ recursive-include mcp-configs *.json
3
+ recursive-include curated *.md
4
+ include LICENSE README.md
@@ -0,0 +1,222 @@
1
+ Metadata-Version: 2.4
2
+ Name: research-plugins
3
+ Version: 1.0.0
4
+ Summary: 350+ academic research skills, MCP configs, and plugins for Research-Claw and AI agents
5
+ License: MIT
6
+ Project-URL: Homepage, https://wentor.ai
7
+ Project-URL: Repository, https://github.com/wentorai/research-plugins
8
+ Keywords: academic,research,skills,ai-agents,openclaw
9
+ Classifier: Development Status :: 4 - Beta
10
+ Classifier: Intended Audience :: Science/Research
11
+ Classifier: License :: OSI Approved :: MIT License
12
+ Classifier: Programming Language :: Python :: 3
13
+ Classifier: Topic :: Scientific/Engineering
14
+ Requires-Python: >=3.10
15
+ Description-Content-Type: text/markdown
16
+ License-File: LICENSE
17
+ Dynamic: license-file
18
+
19
+ # @wentorai/research-plugins
20
+
21
+ **[English](#english)** | **[中文](#中文)**
22
+
23
+ ---
24
+
25
+ <a id="english"></a>
26
+
27
+ ## Research Plugins for Research-Claw
28
+
29
+ An open-source collection of **173 academic research skills**, **61 MCP server configs**, **13 agent tools**, and **6 curated resource lists** for [Research-Claw](https://wentor.ai) and other AI coding agents.
30
+
31
+ Built by [Wentor AI](https://wentor.ai) for the global research community.
32
+
33
+ ### What's Inside
34
+
35
+ | Component | Count | Description |
36
+ |-----------|-------|-------------|
37
+ | **Skills** | 173 | Practical SKILL.md guides covering literature search, academic writing, data analysis, research methods, 16 domain specialties, and productivity tools |
38
+ | **Agent Tools** | 13 | TypeScript API wrappers for Semantic Scholar, OpenAlex, CrossRef, arXiv, PubMed, and Unpaywall |
39
+ | **MCP Configs** | 61 | Ready-to-use MCP server configurations for reference managers, knowledge bases, research databases, and AI platforms |
40
+ | **Curated Lists** | 6 | Hand-picked resource collections for each skill category |
41
+
42
+ ### Taxonomy
43
+
44
+ Skills are organized into **6 categories** with **40 subcategories**:
45
+
46
+ | Category | Subcategories | Skills |
47
+ |----------|---------------|--------|
48
+ | **literature** | search, discovery, fulltext, metadata | Paper search, citation tracking, open access |
49
+ | **writing** | composition, polish, latex, templates, citation | Academic writing, LaTeX, reference management |
50
+ | **analysis** | statistics, econometrics, wrangling, dataviz | Statistical methods, data cleaning, visualization |
51
+ | **research** | methodology, deep-research, paper-review, automation, funding | Research design, systematic reviews, grant writing |
52
+ | **domains** | 16 disciplines (CS, AI/ML, biomedical, chemistry, economics, finance, law, physics, math, ecology, etc.) | Domain-specific research methods and tools |
53
+ | **tools** | diagram, document, code-exec, scraping, knowledge-graph, ocr-translate | Diagrams, PDF parsing, reproducible code, OCR |
54
+
55
+ ### Install
56
+
57
+ #### As OpenClaw Plugin
58
+
59
+ ```bash
60
+ openclaw plugins install @wentorai/research-plugins
61
+ ```
62
+
63
+ #### As Skills Collection (Claude Code, Cursor, Windsurf, OpenCode)
64
+
65
+ ```bash
66
+ npx skills add wentorai/research-plugins
67
+ ```
68
+
69
+ #### Via npm
70
+
71
+ ```bash
72
+ npm install @wentorai/research-plugins
73
+ ```
74
+
75
+ #### Via pip
76
+
77
+ ```bash
78
+ pip install research-plugins
79
+ ```
80
+
81
+ ### Configuration
82
+
83
+ Optional: set a Semantic Scholar API key for higher rate limits:
84
+
85
+ ```json
86
+ {
87
+ "plugins": {
88
+ "entries": {
89
+ "research-plugins": {
90
+ "semanticScholarApiKey": "your-key-here"
91
+ }
92
+ }
93
+ }
94
+ }
95
+ ```
96
+
97
+ Get a free API key at [semanticscholar.org/product/api](https://www.semanticscholar.org/product/api).
98
+
99
+ ### Agent Tools
100
+
101
+ 13 tools across 6 academic API integrations, registered automatically when used as an OpenClaw plugin:
102
+
103
+ | Module | Tools | API |
104
+ |--------|-------|-----|
105
+ | `semantic-scholar` | `search_papers`, `get_paper`, `get_citations` | Semantic Scholar |
106
+ | `openalex` | `search_openalex`, `get_work`, `get_author_openalex` | OpenAlex |
107
+ | `crossref` | `resolve_doi`, `search_crossref` | CrossRef |
108
+ | `arxiv` | `search_arxiv`, `get_arxiv_paper` | arXiv |
109
+ | `pubmed` | `search_pubmed`, `get_article` | PubMed / NCBI |
110
+ | `unpaywall` | `find_oa_version` | Unpaywall |
111
+
112
+ ### Community Attribution
113
+
114
+ This project curates, organizes, and enhances publicly available academic resources from across the open-source ecosystem. We are grateful to the researchers, developers, and open-source communities whose work makes this collection possible.
115
+
116
+ - **Skills** are authored guides based on established research methodologies, public API documentation, and widely-used academic workflows. Where content is derived from specific open-source projects, the `source` field in each SKILL.md frontmatter links to the original.
117
+ - **MCP Configs** reference third-party open-source MCP servers. Each config's `source` field links to the original GitHub repository. We do not host or redistribute these servers.
118
+ - **Curated Lists** aggregate links to community resources and are provided for discovery purposes.
119
+
120
+ All original content in this repository is released under the [MIT License](LICENSE). Third-party projects referenced retain their own licenses.
121
+
122
+ ### Contributing
123
+
124
+ See [CONTRIBUTING.md](CONTRIBUTING.md) for guidelines on adding skills, MCP configs, and curated resources.
125
+
126
+ ### License
127
+
128
+ [MIT](LICENSE) -- Copyright (c) 2026 Wentor AI
129
+
130
+ ---
131
+
132
+ <a id="中文"></a>
133
+
134
+ ## Research-Claw 科研插件集
135
+
136
+ 一个开源的学术科研资源集合,包含 **173 个科研技能**、**61 个 MCP 服务器配置**、**13 个智能体工具** 和 **6 个精选资源列表**,为 [Research-Claw (科研龙虾)](https://wentor.ai) 及其他 AI 编程助手而构建。
137
+
138
+ 由 [Wentor AI](https://wentor.ai) 为全球科研社区打造。
139
+
140
+ ### 包含内容
141
+
142
+ | 组件 | 数量 | 说明 |
143
+ |------|------|------|
144
+ | **技能 (Skills)** | 173 | 涵盖文献检索、学术写作、数据分析、研究方法、16 个学科领域及生产力工具的实用指南 |
145
+ | **智能体工具** | 13 | 封装 Semantic Scholar、OpenAlex、CrossRef、arXiv、PubMed、Unpaywall 六大学术 API 的 TypeScript 工具 |
146
+ | **MCP 配置** | 61 | 即用型 MCP 服务器配置,涵盖文献管理、知识库、学术数据库、AI 平台等 |
147
+ | **精选列表** | 6 | 按分类整理的优质资源推荐 |
148
+
149
+ ### 分类体系
150
+
151
+ 技能按 **6 大类别** 和 **40 个子分类** 组织:
152
+
153
+ | 类别 | 子分类 | 覆盖范围 |
154
+ |------|--------|---------|
155
+ | **文献 (literature)** | 检索、发现、全文获取、元数据 | 论文搜索、引文追踪、开放获取 |
156
+ | **写作 (writing)** | 写作、润色、LaTeX、模板、引用 | 学术写作、LaTeX 排版、参考文献管理 |
157
+ | **分析 (analysis)** | 统计、计量经济、数据处理、可视化 | 统计方法、数据清洗、图表制作 |
158
+ | **研究 (research)** | 方法论、深度研究、论文评审、自动化、基金 | 研究设计、系统综述、基金申请 |
159
+ | **学科 (domains)** | 16 个学科方向 | 各学科专属研究方法与工具 |
160
+ | **工具 (tools)** | 图表、文档、代码执行、爬虫、知识图谱、OCR | 流程图、PDF 解析、可复现代码、OCR 翻译 |
161
+
162
+ ### 安装方式
163
+
164
+ #### 作为 OpenClaw 插件
165
+
166
+ ```bash
167
+ openclaw plugins install @wentorai/research-plugins
168
+ ```
169
+
170
+ #### 作为技能集合 (Claude Code, Cursor, Windsurf, OpenCode)
171
+
172
+ ```bash
173
+ npx skills add wentorai/research-plugins
174
+ ```
175
+
176
+ #### 通过 npm
177
+
178
+ ```bash
179
+ npm install @wentorai/research-plugins
180
+ ```
181
+
182
+ #### 通过 pip
183
+
184
+ ```bash
185
+ pip install research-plugins
186
+ ```
187
+
188
+ ### 配置
189
+
190
+ 可选:设置 Semantic Scholar API Key 以提高速率限制:
191
+
192
+ ```json
193
+ {
194
+ "plugins": {
195
+ "entries": {
196
+ "research-plugins": {
197
+ "semanticScholarApiKey": "your-key-here"
198
+ }
199
+ }
200
+ }
201
+ }
202
+ ```
203
+
204
+ 在 [semanticscholar.org/product/api](https://www.semanticscholar.org/product/api) 免费获取 API Key。
205
+
206
+ ### 社区致谢与声明
207
+
208
+ 本项目对互联网上公开可用的学术资源进行了遴选、整理和增强。我们感谢所有使这个集合成为可能的研究者、开发者和开源社区。
209
+
210
+ - **技能** 是基于成熟研究方法、公开 API 文档和广泛使用的学术工作流编写的实用指南。凡内容源自特定开源项目的,每个 SKILL.md 的 frontmatter 中 `source` 字段均标注了原始链接。
211
+ - **MCP 配置** 引用第三方开源 MCP 服务器,每个配置的 `source` 字段链接到原始 GitHub 仓库。我们不托管或重新分发这些服务器。
212
+ - **精选列表** 汇集社区资源链接,仅供发现和参考之用。
213
+
214
+ 本仓库中的所有原创内容均以 [MIT 许可证](LICENSE) 发布。引用的第三方项目保留其各自的许可证。
215
+
216
+ ### 参与贡献
217
+
218
+ 请查阅 [CONTRIBUTING.md](CONTRIBUTING.md) 了解添加技能、MCP 配置和精选资源的指南。
219
+
220
+ ### 许可证
221
+
222
+ [MIT](LICENSE) -- Copyright (c) 2026 Wentor AI
@@ -0,0 +1,204 @@
1
+ # @wentorai/research-plugins
2
+
3
+ **[English](#english)** | **[中文](#中文)**
4
+
5
+ ---
6
+
7
+ <a id="english"></a>
8
+
9
+ ## Research Plugins for Research-Claw
10
+
11
+ An open-source collection of **173 academic research skills**, **61 MCP server configs**, **13 agent tools**, and **6 curated resource lists** for [Research-Claw](https://wentor.ai) and other AI coding agents.
12
+
13
+ Built by [Wentor AI](https://wentor.ai) for the global research community.
14
+
15
+ ### What's Inside
16
+
17
+ | Component | Count | Description |
18
+ |-----------|-------|-------------|
19
+ | **Skills** | 173 | Practical SKILL.md guides covering literature search, academic writing, data analysis, research methods, 16 domain specialties, and productivity tools |
20
+ | **Agent Tools** | 13 | TypeScript API wrappers for Semantic Scholar, OpenAlex, CrossRef, arXiv, PubMed, and Unpaywall |
21
+ | **MCP Configs** | 61 | Ready-to-use MCP server configurations for reference managers, knowledge bases, research databases, and AI platforms |
22
+ | **Curated Lists** | 6 | Hand-picked resource collections for each skill category |
23
+
24
+ ### Taxonomy
25
+
26
+ Skills are organized into **6 categories** with **40 subcategories**:
27
+
28
+ | Category | Subcategories | Skills |
29
+ |----------|---------------|--------|
30
+ | **literature** | search, discovery, fulltext, metadata | Paper search, citation tracking, open access |
31
+ | **writing** | composition, polish, latex, templates, citation | Academic writing, LaTeX, reference management |
32
+ | **analysis** | statistics, econometrics, wrangling, dataviz | Statistical methods, data cleaning, visualization |
33
+ | **research** | methodology, deep-research, paper-review, automation, funding | Research design, systematic reviews, grant writing |
34
+ | **domains** | 16 disciplines (CS, AI/ML, biomedical, chemistry, economics, finance, law, physics, math, ecology, etc.) | Domain-specific research methods and tools |
35
+ | **tools** | diagram, document, code-exec, scraping, knowledge-graph, ocr-translate | Diagrams, PDF parsing, reproducible code, OCR |
36
+
37
+ ### Install
38
+
39
+ #### As OpenClaw Plugin
40
+
41
+ ```bash
42
+ openclaw plugins install @wentorai/research-plugins
43
+ ```
44
+
45
+ #### As Skills Collection (Claude Code, Cursor, Windsurf, OpenCode)
46
+
47
+ ```bash
48
+ npx skills add wentorai/research-plugins
49
+ ```
50
+
51
+ #### Via npm
52
+
53
+ ```bash
54
+ npm install @wentorai/research-plugins
55
+ ```
56
+
57
+ #### Via pip
58
+
59
+ ```bash
60
+ pip install research-plugins
61
+ ```
62
+
63
+ ### Configuration
64
+
65
+ Optional: set a Semantic Scholar API key for higher rate limits:
66
+
67
+ ```json
68
+ {
69
+ "plugins": {
70
+ "entries": {
71
+ "research-plugins": {
72
+ "semanticScholarApiKey": "your-key-here"
73
+ }
74
+ }
75
+ }
76
+ }
77
+ ```
78
+
79
+ Get a free API key at [semanticscholar.org/product/api](https://www.semanticscholar.org/product/api).
80
+
81
+ ### Agent Tools
82
+
83
+ 13 tools across 6 academic API integrations, registered automatically when used as an OpenClaw plugin:
84
+
85
+ | Module | Tools | API |
86
+ |--------|-------|-----|
87
+ | `semantic-scholar` | `search_papers`, `get_paper`, `get_citations` | Semantic Scholar |
88
+ | `openalex` | `search_openalex`, `get_work`, `get_author_openalex` | OpenAlex |
89
+ | `crossref` | `resolve_doi`, `search_crossref` | CrossRef |
90
+ | `arxiv` | `search_arxiv`, `get_arxiv_paper` | arXiv |
91
+ | `pubmed` | `search_pubmed`, `get_article` | PubMed / NCBI |
92
+ | `unpaywall` | `find_oa_version` | Unpaywall |
93
+
94
+ ### Community Attribution
95
+
96
+ This project curates, organizes, and enhances publicly available academic resources from across the open-source ecosystem. We are grateful to the researchers, developers, and open-source communities whose work makes this collection possible.
97
+
98
+ - **Skills** are authored guides based on established research methodologies, public API documentation, and widely-used academic workflows. Where content is derived from specific open-source projects, the `source` field in each SKILL.md frontmatter links to the original.
99
+ - **MCP Configs** reference third-party open-source MCP servers. Each config's `source` field links to the original GitHub repository. We do not host or redistribute these servers.
100
+ - **Curated Lists** aggregate links to community resources and are provided for discovery purposes.
101
+
102
+ All original content in this repository is released under the [MIT License](LICENSE). Third-party projects referenced retain their own licenses.
103
+
104
+ ### Contributing
105
+
106
+ See [CONTRIBUTING.md](CONTRIBUTING.md) for guidelines on adding skills, MCP configs, and curated resources.
107
+
108
+ ### License
109
+
110
+ [MIT](LICENSE) -- Copyright (c) 2026 Wentor AI
111
+
112
+ ---
113
+
114
+ <a id="中文"></a>
115
+
116
+ ## Research-Claw 科研插件集
117
+
118
+ 一个开源的学术科研资源集合,包含 **173 个科研技能**、**61 个 MCP 服务器配置**、**13 个智能体工具** 和 **6 个精选资源列表**,为 [Research-Claw (科研龙虾)](https://wentor.ai) 及其他 AI 编程助手而构建。
119
+
120
+ 由 [Wentor AI](https://wentor.ai) 为全球科研社区打造。
121
+
122
+ ### 包含内容
123
+
124
+ | 组件 | 数量 | 说明 |
125
+ |------|------|------|
126
+ | **技能 (Skills)** | 173 | 涵盖文献检索、学术写作、数据分析、研究方法、16 个学科领域及生产力工具的实用指南 |
127
+ | **智能体工具** | 13 | 封装 Semantic Scholar、OpenAlex、CrossRef、arXiv、PubMed、Unpaywall 六大学术 API 的 TypeScript 工具 |
128
+ | **MCP 配置** | 61 | 即用型 MCP 服务器配置,涵盖文献管理、知识库、学术数据库、AI 平台等 |
129
+ | **精选列表** | 6 | 按分类整理的优质资源推荐 |
130
+
131
+ ### 分类体系
132
+
133
+ 技能按 **6 大类别** 和 **40 个子分类** 组织:
134
+
135
+ | 类别 | 子分类 | 覆盖范围 |
136
+ |------|--------|---------|
137
+ | **文献 (literature)** | 检索、发现、全文获取、元数据 | 论文搜索、引文追踪、开放获取 |
138
+ | **写作 (writing)** | 写作、润色、LaTeX、模板、引用 | 学术写作、LaTeX 排版、参考文献管理 |
139
+ | **分析 (analysis)** | 统计、计量经济、数据处理、可视化 | 统计方法、数据清洗、图表制作 |
140
+ | **研究 (research)** | 方法论、深度研究、论文评审、自动化、基金 | 研究设计、系统综述、基金申请 |
141
+ | **学科 (domains)** | 16 个学科方向 | 各学科专属研究方法与工具 |
142
+ | **工具 (tools)** | 图表、文档、代码执行、爬虫、知识图谱、OCR | 流程图、PDF 解析、可复现代码、OCR 翻译 |
143
+
144
+ ### 安装方式
145
+
146
+ #### 作为 OpenClaw 插件
147
+
148
+ ```bash
149
+ openclaw plugins install @wentorai/research-plugins
150
+ ```
151
+
152
+ #### 作为技能集合 (Claude Code, Cursor, Windsurf, OpenCode)
153
+
154
+ ```bash
155
+ npx skills add wentorai/research-plugins
156
+ ```
157
+
158
+ #### 通过 npm
159
+
160
+ ```bash
161
+ npm install @wentorai/research-plugins
162
+ ```
163
+
164
+ #### 通过 pip
165
+
166
+ ```bash
167
+ pip install research-plugins
168
+ ```
169
+
170
+ ### 配置
171
+
172
+ 可选:设置 Semantic Scholar API Key 以提高速率限制:
173
+
174
+ ```json
175
+ {
176
+ "plugins": {
177
+ "entries": {
178
+ "research-plugins": {
179
+ "semanticScholarApiKey": "your-key-here"
180
+ }
181
+ }
182
+ }
183
+ }
184
+ ```
185
+
186
+ 在 [semanticscholar.org/product/api](https://www.semanticscholar.org/product/api) 免费获取 API Key。
187
+
188
+ ### 社区致谢与声明
189
+
190
+ 本项目对互联网上公开可用的学术资源进行了遴选、整理和增强。我们感谢所有使这个集合成为可能的研究者、开发者和开源社区。
191
+
192
+ - **技能** 是基于成熟研究方法、公开 API 文档和广泛使用的学术工作流编写的实用指南。凡内容源自特定开源项目的,每个 SKILL.md 的 frontmatter 中 `source` 字段均标注了原始链接。
193
+ - **MCP 配置** 引用第三方开源 MCP 服务器,每个配置的 `source` 字段链接到原始 GitHub 仓库。我们不托管或重新分发这些服务器。
194
+ - **精选列表** 汇集社区资源链接,仅供发现和参考之用。
195
+
196
+ 本仓库中的所有原创内容均以 [MIT 许可证](LICENSE) 发布。引用的第三方项目保留其各自的许可证。
197
+
198
+ ### 参与贡献
199
+
200
+ 请查阅 [CONTRIBUTING.md](CONTRIBUTING.md) 了解添加技能、MCP 配置和精选资源的指南。
201
+
202
+ ### 许可证
203
+
204
+ [MIT](LICENSE) -- Copyright (c) 2026 Wentor AI
@@ -0,0 +1,64 @@
1
+ # Curated Analysis Resources
2
+
3
+ > Hand-picked resources for academic researchers working with statistics, econometrics, data wrangling, and visualization.
4
+
5
+ ## Statistics
6
+
7
+ ### Tools & Software (R)
8
+ - **[tidyverse](https://www.tidyverse.org/)** — Opinionated collection of R packages (dplyr, ggplot2, tidyr, etc.) for tidy data analysis.
9
+ - **[R for Data Science (2e)](https://r4ds.hadley.nz/)** — Free online book by Hadley Wickham; the definitive introduction to data science in R.
10
+ - **[statsmodels](https://www.statsmodels.org/)** — Python module for statistical modeling, hypothesis tests, and regression diagnostics.
11
+ - **[JASP](https://jasp-stats.org/)** — Free, open-source GUI for Bayesian and frequentist statistics; great for teaching and exploratory analysis.
12
+
13
+ ### Tools & Software (Python)
14
+ - **[SciPy](https://scipy.org/)** — Fundamental library for scientific computing; stats, optimization, linear algebra.
15
+ - **[pingouin](https://pingouin-stats.org/)** — Simple, pandas-friendly Python package for common statistical tests (ANOVA, t-tests, correlations).
16
+ - **[PyMC](https://www.pymc.io/)** — Probabilistic programming library for Bayesian statistical modeling and inference.
17
+
18
+ ### Key References
19
+ - **[An Introduction to Statistical Learning (ISLR)](https://www.statlearning.com/)** — Free textbook with R and Python labs; accessible introduction to modern statistics and machine learning.
20
+ - **[Seeing Theory](https://seeing-theory.brown.edu/)** — Interactive visual introduction to probability and statistics from Brown University.
21
+ - **[Common statistical tests are linear models](https://lindeloev.github.io/tests-as-linear/)** — Concise reference showing that t-tests, ANOVA, chi-squared, etc. are all special cases of the linear model.
22
+
23
+ ## Econometrics
24
+
25
+ ### Tools & Software
26
+ - **[Stata](https://www.stata.com/)** — Industry-standard software for econometric analysis; excellent documentation and community (ado files).
27
+ - **[linearmodels (Python)](https://bashtage.github.io/linearmodels/)** — Panel data, IV, and system regression models for Python; extends statsmodels.
28
+ - **[fixest (R)](https://lrberge.github.io/fixest/)** — Blazing-fast fixed-effects estimation in R; supports multi-way clustering and IV.
29
+ - **[CausalInference (Python)](https://causalinferenceinpython.org/)** — Open tutorials on difference-in-differences, RDD, IV, and synthetic control in Python.
30
+
31
+ ### Key References
32
+ - **[Causal Inference: The Mixtape (Cunningham)](https://mixtape.scunning.com/)** — Free online textbook covering modern causal inference methods with Stata and R code.
33
+ - **[The Effect (Huntington-Klein)](https://theeffectbook.net/)** — Free book on research design and causal inference; R and Python examples.
34
+ - **[Mostly Harmless Econometrics](https://www.mostlyharmlesseconometrics.com/)** — Angrist and Pischke's concise guide to applied econometric methods.
35
+
36
+ ## Data Wrangling
37
+
38
+ ### Tools & Software
39
+ - **[pandas](https://pandas.pydata.org/)** — The core Python library for tabular data manipulation and analysis.
40
+ - **[Polars](https://pola.rs/)** — Lightning-fast DataFrame library in Rust with Python bindings; ideal for large datasets.
41
+ - **[OpenRefine](https://openrefine.org/)** — Free tool for cleaning messy data, reconciling entities, and transforming formats.
42
+ - **[data.table (R)](https://rdatatable.gitlab.io/data.table/)** — High-performance R package for fast aggregation and joins on large data.
43
+
44
+ ### Online Courses & Tutorials
45
+ - **[Pandas Getting Started Tutorials](https://pandas.pydata.org/docs/getting_started/intro_tutorials/)** — Official step-by-step tutorials covering core pandas operations.
46
+ - **[Tidy Data (Wickham, 2014)](https://www.jstatsoft.org/article/view/v059i10)** — Foundational paper on data structure principles; essential reading before any analysis.
47
+
48
+ ## Data Visualization
49
+
50
+ ### Plotting Libraries
51
+ - **[Matplotlib](https://matplotlib.org/)** — Foundational Python plotting library; full control over every element.
52
+ - **[ggplot2](https://ggplot2.tidyverse.org/)** — Grammar of Graphics implementation in R; the gold standard for statistical graphics.
53
+ - **[Plotly](https://plotly.com/python/)** — Interactive, publication-quality charts in Python, R, and JavaScript.
54
+ - **[Observable Plot](https://observablehq.com/plot/)** — Concise JavaScript plotting library for exploratory data visualization.
55
+ - **[seaborn](https://seaborn.pydata.org/)** — High-level Python interface to Matplotlib for attractive statistical graphics.
56
+
57
+ ### Color Palettes & Design
58
+ - **[ColorBrewer](https://colorbrewer2.org/)** — Cartographer-designed color schemes that are colorblind-safe and print-friendly.
59
+ - **[Scientific Colour Maps (Crameri)](https://www.fabiocrameri.ch/colourmaps/)** — Perceptually uniform, colorblind-friendly palettes specifically designed for scientific visualization.
60
+ - **[Datawrapper Blog: Color Guide](https://blog.datawrapper.de/colorguide/)** — Practical guide to choosing and using color in data visualization.
61
+
62
+ ### Key References
63
+ - **[Fundamentals of Data Visualization (Wilke)](https://clauswilke.com/dataviz/)** — Free online book covering principles of effective data visualization; language-agnostic.
64
+ - **[Ten Simple Rules for Better Figures (Rougier et al.)](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003833)** — Concise, practical guidelines for publication-ready figures.
@@ -0,0 +1,104 @@
1
+ # Curated Domain-Specific Resources
2
+
3
+ > Hand-picked resources covering 16 academic domains, each with key tools, databases, and references.
4
+
5
+ ## Computer Science
6
+
7
+ - **[DBLP](https://dblp.org/)** — Comprehensive bibliography of CS publications; clean metadata and open API.
8
+ - **[Papers With Code](https://paperswithcode.com/)** — Links ML/AI papers to code implementations and benchmark leaderboards.
9
+ - **[ACM Digital Library](https://dl.acm.org/)** — Full text of ACM publications plus the Guide to Computing Literature.
10
+ - **[CS Rankings](https://csrankings.org/)** — Metrics-based ranking of CS departments by publication output at top venues.
11
+
12
+ ## AI & Machine Learning
13
+
14
+ - **[Hugging Face](https://huggingface.co/)** — Open platform for models, datasets, and spaces; the hub of open-source AI.
15
+ - **[arXiv cs.AI / cs.LG](https://arxiv.org/list/cs.AI/recent)** — Daily preprints in artificial intelligence and machine learning.
16
+ - **[Distill.pub](https://distill.pub/)** — Clear, interactive explanations of machine learning concepts (archived but invaluable).
17
+ - **[Awesome Machine Learning](https://github.com/josephmisiti/awesome-machine-learning)** — Curated list of ML frameworks, libraries, and tools across languages.
18
+
19
+ ## Biomedical
20
+
21
+ - **[PubMed / MEDLINE](https://pubmed.ncbi.nlm.nih.gov/)** — Authoritative index of biomedical literature with MeSH-controlled vocabulary.
22
+ - **[UniProt](https://www.uniprot.org/)** — Comprehensive protein sequence and functional annotation database.
23
+ - **[NCBI GEO](https://www.ncbi.nlm.nih.gov/geo/)** — Public repository for high-throughput gene expression and genomics datasets.
24
+ - **[BioRender](https://www.biorender.com/)** — Scientific illustration tool with thousands of pre-made biology icons and templates.
25
+
26
+ ## Chemistry
27
+
28
+ - **[PubChem](https://pubchem.ncbi.nlm.nih.gov/)** — Open chemistry database with compound, substance, and bioassay data (110M+ compounds).
29
+ - **[RDKit](https://www.rdkit.org/)** — Open-source cheminformatics toolkit for molecular manipulation and descriptor calculation.
30
+ - **[Reaxys](https://www.reaxys.com/)** — Elsevier's curated reaction and substance database for synthetic chemistry.
31
+ - **[ChemRxiv](https://chemrxiv.org/)** — Preprint server for chemistry from ACS, RSC, and GDCh.
32
+
33
+ ## Economics
34
+
35
+ - **[NBER Working Papers](https://www.nber.org/papers)** — Influential working paper series covering all areas of economics.
36
+ - **[FRED (Federal Reserve Economic Data)](https://fred.stlouisfed.org/)** — 800,000+ economic time series; essential for macroeconomic research.
37
+ - **[AEA RCT Registry](https://www.socialscienceregistry.org/)** — Registry for randomized controlled trials in economics and social science.
38
+ - **[RePEc / IDEAS](https://ideas.repec.org/)** — Largest open bibliographic database for economics with rankings and author profiles.
39
+
40
+ ## Finance
41
+
42
+ - **[WRDS](https://wrds-www.wharton.upenn.edu/)** — Wharton Research Data Services; gateway to CRSP, Compustat, and other finance databases.
43
+ - **[Ken French Data Library](https://mba.tuck.dartmouth.edu/pages/faculty/ken.french/data_library.html)** — Factor portfolios and returns data; essential for asset pricing research.
44
+ - **[QuantLib](https://www.quantlib.org/)** — Open-source library for quantitative finance: derivatives pricing, risk management.
45
+
46
+ ## Law
47
+
48
+ - **[Google Scholar Case Law](https://scholar.google.com/scholar?q=&hl=en&as_sdt=4)** — Free search of US case law and legal journals.
49
+ - **[SSRN Legal Scholarship Network](https://www.ssrn.com/index.cfm/en/lsn/)** — Preprints and working papers across all legal disciplines.
50
+ - **[CourtListener (Free Law Project)](https://www.courtlistener.com/)** — Free, open archive of US court opinions, oral arguments, and judicial data.
51
+
52
+ ## Social Science
53
+
54
+ - **[ICPSR](https://www.icpsr.umich.edu/)** — Largest archive of social science data; 16,000+ datasets with documentation.
55
+ - **[Qualtrics](https://www.qualtrics.com/)** — Survey platform widely used in social science research; free academic accounts available.
56
+ - **[World Values Survey](https://www.worldvaluessurvey.org/)** — Cross-national time-series survey of human beliefs and values (120+ countries).
57
+
58
+ ## Education
59
+
60
+ - **[ERIC](https://eric.ed.gov/)** — IES-sponsored database of education research and information.
61
+ - **[OECD Education Data](https://data.oecd.org/education.htm)** — International education statistics and indicators from OECD countries.
62
+ - **[What Works Clearinghouse](https://ies.ed.gov/ncee/wwc/)** — Evidence reviews of education programs, policies, and practices.
63
+
64
+ ## Physics
65
+
66
+ - **[arXiv Physics](https://arxiv.org/archive/physics)** — Preprint server that physicists have used since 1991; the original open access platform.
67
+ - **[INSPIRE-HEP](https://inspirehep.net/)** — High-energy physics literature database with citation analysis and author disambiguation.
68
+ - **[NIST Physical Reference Data](https://www.nist.gov/pml/productsservices/physical-reference-data)** — Fundamental physical constants, atomic spectra, and reference datasets.
69
+
70
+ ## Ecology & Environmental Science
71
+
72
+ - **[GBIF](https://www.gbif.org/)** — Global Biodiversity Information Facility; 2B+ occurrence records for biodiversity research.
73
+ - **[NASA Earthdata](https://earthdata.nasa.gov/)** — Free access to NASA's Earth observation data across atmosphere, land, and ocean.
74
+ - **[Movebank](https://www.movebank.org/)** — Free platform for managing, sharing, and analyzing animal movement data.
75
+
76
+ ## Mathematics
77
+
78
+ - **[MathSciNet](https://mathscinet.ams.org/)** — AMS's comprehensive reviews and bibliography database for mathematics.
79
+ - **[OEIS](https://oeis.org/)** — The On-Line Encyclopedia of Integer Sequences; indispensable for combinatorics and number theory.
80
+ - **[Lean Community](https://leanprover-community.github.io/)** — Resources for the Lean proof assistant and Mathlib library; growing role in formalized math.
81
+
82
+ ## Humanities
83
+
84
+ - **[JSTOR](https://www.jstor.org/)** — Digital library of academic journals, books, and primary sources; strong humanities coverage.
85
+ - **[HathiTrust Digital Library](https://www.hathitrust.org/)** — 17M+ digitized volumes from major research libraries; full-text search for public domain works.
86
+ - **[Project Gutenberg](https://www.gutenberg.org/)** — 70,000+ free eBooks; essential primary source collection for literary and historical research.
87
+
88
+ ## Business & Management
89
+
90
+ - **[Harvard Business Review](https://hbr.org/)** — Practitioner-oriented management research and case studies.
91
+ - **[ABI/INFORM (ProQuest)](https://about.proquest.com/en/products-services/abi_inform_complete/)** — Comprehensive business database covering journals, dissertations, and trade publications.
92
+ - **[Crunchbase](https://www.crunchbase.com/)** — Company, funding, and investor data; widely used in entrepreneurship and innovation research.
93
+
94
+ ## Pharmaceutical Science
95
+
96
+ - **[DrugBank](https://go.drugbank.com/)** — Comprehensive database of drug and drug target information.
97
+ - **[ClinicalTrials.gov](https://clinicaltrials.gov/)** — Registry of clinical studies conducted worldwide; 400,000+ studies.
98
+ - **[ChEMBL](https://www.ebi.ac.uk/chembl/)** — Open bioactivity database of drug-like compounds; curated from medicinal chemistry literature.
99
+
100
+ ## Geoscience
101
+
102
+ - **[USGS Publications](https://pubs.usgs.gov/)** — Free access to all US Geological Survey scientific publications and data.
103
+ - **[Pangaea](https://www.pangaea.de/)** — Open-access repository for earth and environmental science data.
104
+ - **[GeoRef (AGI)](https://www.americangeosciences.org/georef)** — Comprehensive bibliographic database for the geosciences (4M+ references).