rectanglepy 0.5.3__tar.gz → 1.0.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.bumpversion.cfg +1 -1
  2. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.gitignore +1 -0
  3. rectanglepy-1.0.0/CHANGELOG.md +23 -0
  4. rectanglepy-1.0.0/LICENSE +674 -0
  5. rectanglepy-1.0.0/PKG-INFO +764 -0
  6. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/README.md +8 -8
  7. rectanglepy-1.0.0/docs/contributing.md +14 -0
  8. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/index.md +2 -1
  9. rectanglepy-1.0.0/docs/installation.md +11 -0
  10. rectanglepy-1.0.0/docs/notebooks/example.ipynb +1145 -0
  11. rectanglepy-1.0.0/docs/references.bib +73 -0
  12. rectanglepy-1.0.0/docs/tutorials.md +13 -0
  13. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/pyproject.toml +1 -1
  14. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/pp/create_signature.py +0 -3
  15. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/pp/rectangle_signature.py +2 -2
  16. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/rectangle.py +18 -8
  17. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/tl/deconvolution.py +1 -0
  18. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/test_rectangle.py +1 -1
  19. rectanglepy-0.5.3/CHANGELOG.md +0 -40
  20. rectanglepy-0.5.3/LICENSE +0 -21
  21. rectanglepy-0.5.3/PKG-INFO +0 -111
  22. rectanglepy-0.5.3/docs/contributing.md +0 -123
  23. rectanglepy-0.5.3/docs/notebooks/example.ipynb +0 -551
  24. rectanglepy-0.5.3/docs/references.bib +0 -17
  25. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.cruft.json +0 -0
  26. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.editorconfig +0 -0
  27. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/ISSUE_TEMPLATE/bug_report.yml +0 -0
  28. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  29. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/ISSUE_TEMPLATE/feature_request.yml +0 -0
  30. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/PULL_REQUEST_TEMPLATE.md +0 -0
  31. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/workflows/build.yaml +0 -0
  32. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/workflows/release.yaml +0 -0
  33. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/workflows/release_testpypi.yaml +0 -0
  34. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.github/workflows/test.yaml +0 -0
  35. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.pre-commit-config.yaml +0 -0
  36. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/.readthedocs.yaml +0 -0
  37. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/Makefile +0 -0
  38. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/_static/.gitkeep +0 -0
  39. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/_static/rec_logo.001.png +0 -0
  40. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/_templates/.gitkeep +0 -0
  41. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/_templates/autosummary/class.rst +0 -0
  42. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/api.md +0 -0
  43. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/changelog.md +0 -0
  44. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/conf.py +0 -0
  45. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/extensions/typed_returns.py +0 -0
  46. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/make.bat +0 -0
  47. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/docs/references.md +0 -0
  48. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/__init__.py +0 -0
  49. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/data/hao1_annotations_small.zip +0 -0
  50. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/data/hao1_counts_small.zip +0 -0
  51. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/data/small_fino_bulks.zip +0 -0
  52. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/pp/__init__.py +0 -0
  53. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/src/rectanglepy/tl/__init__.py +0 -0
  54. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/data/TIL10_signature.txt +0 -0
  55. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/data/bulk_small.csv +0 -0
  56. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/data/cell_annotations_small.txt +0 -0
  57. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/data/quanTIseq_SimRNAseq_mixture_smaller.csv +0 -0
  58. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/data/quanTIseq_SimRNAseq_read_fractions_small.txt +0 -0
  59. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/data/sc_object_small.csv +0 -0
  60. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/data/signature_hao1.csv +0 -0
  61. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/test_pp.py +0 -0
  62. {rectanglepy-0.5.3 → rectanglepy-1.0.0}/tests/test_tl.py +0 -0
{rectanglepy-0.5.3 → rectanglepy-1.0.0}/.bumpversion.cfg RENAMED
@@ -1,5 +1,5 @@
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  [bumpversion]
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- current_version = 0.5.3
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+ current_version = 1.0.0
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  tag = True
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  commit = True
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{rectanglepy-0.5.3 → rectanglepy-1.0.0}/.gitignore RENAMED
@@ -26,3 +26,4 @@ __pycache__/
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  # IDEs
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  /.idea/
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  /.vscode/
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+ /docs/visium.zarr/
rectanglepy-1.0.0/CHANGELOG.md ADDED
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+ # Changelog
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+
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+ All notable changes to this project will be documented in this file.
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+
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+ The format is based on [Keep a Changelog][],
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+ and this project adheres to [Semantic Versioning][].
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+
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+ [keep a changelog]: https://keepachangelog.com/en/1.0.0/
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+ [semantic versioning]: https://semver.org/spec/v2.0.0.html
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+
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+ ## [Unreleased]
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+
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+ ## [1.0.0] - 2025-08-14
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+
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+ ### Added
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+
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+ - Public release of Rectangle with full core functionalities and documentation for cell-type deconvolution.
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+
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+ ## [0.1.0] - 2024-04-25
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+
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+ ### Added
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+
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+ - Initial public release of Rectangle.