rectanglepy 0.5.1__tar.gz → 0.5.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.bumpversion.cfg +1 -1
  2. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/workflows/build.yaml +6 -2
  3. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/workflows/release.yaml +8 -4
  4. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/workflows/test.yaml +4 -0
  5. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/PKG-INFO +2 -1
  6. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/pyproject.toml +3 -2
  7. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.cruft.json +0 -0
  8. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.editorconfig +0 -0
  9. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/ISSUE_TEMPLATE/bug_report.yml +0 -0
  10. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  11. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/ISSUE_TEMPLATE/feature_request.yml +0 -0
  12. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/PULL_REQUEST_TEMPLATE.md +0 -0
  13. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/workflows/release_testpypi.yaml +0 -0
  14. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.gitignore +0 -0
  15. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.pre-commit-config.yaml +0 -0
  16. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/.readthedocs.yaml +0 -0
  17. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/CHANGELOG.md +0 -0
  18. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/LICENSE +0 -0
  19. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/README.md +0 -0
  20. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/Makefile +0 -0
  21. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/_static/.gitkeep +0 -0
  22. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/_static/rec_logo.001.png +0 -0
  23. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/_templates/.gitkeep +0 -0
  24. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/_templates/autosummary/class.rst +0 -0
  25. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/api.md +0 -0
  26. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/changelog.md +0 -0
  27. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/conf.py +0 -0
  28. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/contributing.md +0 -0
  29. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/extensions/typed_returns.py +0 -0
  30. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/index.md +0 -0
  31. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/make.bat +0 -0
  32. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/notebooks/example.ipynb +0 -0
  33. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/references.bib +0 -0
  34. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/references.md +0 -0
  35. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/__init__.py +0 -0
  36. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/data/hao1_annotations_small.zip +0 -0
  37. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/data/hao1_counts_small.zip +0 -0
  38. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/data/small_fino_bulks.zip +0 -0
  39. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/pp/__init__.py +0 -0
  40. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/pp/create_signature.py +0 -0
  41. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/pp/rectangle_signature.py +0 -0
  42. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/rectangle.py +0 -0
  43. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/tl/__init__.py +0 -0
  44. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/src/rectanglepy/tl/deconvolution.py +0 -0
  45. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/data/TIL10_signature.txt +0 -0
  46. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/data/bulk_small.csv +0 -0
  47. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/data/cell_annotations_small.txt +0 -0
  48. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/data/quanTIseq_SimRNAseq_mixture_smaller.csv +0 -0
  49. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/data/quanTIseq_SimRNAseq_read_fractions_small.txt +0 -0
  50. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/data/sc_object_small.csv +0 -0
  51. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/data/signature_hao1.csv +0 -0
  52. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/test_pp.py +0 -0
  53. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/test_rectangle.py +0 -0
  54. {rectanglepy-0.5.1 → rectanglepy-0.5.2}/tests/test_tl.py +0 -0
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/.bumpversion.cfg RENAMED
@@ -1,5 +1,5 @@
1
1
  [bumpversion]
2
- current_version = 0.5.1
2
+ current_version = 0.5.2
3
3
  tag = True
4
4
  commit = True
5
5
 
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/workflows/build.yaml RENAMED
@@ -23,6 +23,10 @@ jobs:
23
23
  include:
24
24
  - os: ubuntu-latest
25
25
  python: "3.10"
26
+ - os: ubuntu-latest
27
+ python: "3.11"
28
+ - os: ubuntu-latest
29
+ python: "3.12"
26
30
  env:
27
31
  OS: ${{ matrix.os }}
28
32
  PYTHON: ${{ matrix.python }}
@@ -55,10 +59,10 @@ jobs:
55
59
  needs: test
56
60
  steps:
57
61
  - uses: actions/checkout@v2
58
- - name: Set up Python 3.10
62
+ - name: Set up Python 3.12
59
63
  uses: actions/setup-python@v2
60
64
  with:
61
- python-version: "3.10"
65
+ python-version: "3.12"
62
66
  - name: Install twine
63
67
  run: pip install twine
64
68
  - name: Install build dependencies
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/workflows/release.yaml RENAMED
@@ -18,6 +18,10 @@ jobs:
18
18
  include:
19
19
  - os: ubuntu-latest
20
20
  python: "3.10"
21
+ - os: ubuntu-latest
22
+ python: "3.11"
23
+ - os: ubuntu-latest
24
+ python: "3.12"
21
25
  env:
22
26
  OS: ${{ matrix.os }}
23
27
  PYTHON: ${{ matrix.python }}
@@ -49,10 +53,10 @@ jobs:
49
53
  needs: test
50
54
  steps:
51
55
  - uses: actions/checkout@v2
52
- - name: Set up Python 3.10
56
+ - name: Set up Python 3.12
53
57
  uses: actions/setup-python@v2
54
58
  with:
55
- python-version: "3.10"
59
+ python-version: "3.12"
56
60
  - name: Install build dependencies
57
61
  run: python -m pip install --upgrade pip wheel twine build
58
62
  - name: Build package
@@ -68,10 +72,10 @@ jobs:
68
72
  - name: Checkout code
69
73
  uses: actions/checkout@v3
70
74
 
71
- - name: Set up Python 3.10
75
+ - name: Set up Python 3.12
72
76
  uses: actions/setup-python@v4
73
77
  with:
74
- python-version: "3.10"
78
+ python-version: "3.12"
75
79
 
76
80
  - name: Install hatch
77
81
  run: pip install hatch
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/.github/workflows/test.yaml RENAMED
@@ -22,6 +22,10 @@ jobs:
22
22
  include:
23
23
  - os: ubuntu-latest
24
24
  python: "3.10"
25
+ - os: ubuntu-latest
26
+ python: "3.11"
27
+ - os: ubuntu-latest
28
+ python: "3.12"
25
29
  env:
26
30
  OS: ${{ matrix.os }}
27
31
  PYTHON: ${{ matrix.python }}
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: rectanglepy
3
- Version: 0.5.1
3
+ Version: 0.5.2
4
4
  Summary: Hierarchical deconvolution of bulk transcriptomics
5
5
  Project-URL: Documentation, https://rectanglepy.readthedocs.io/
6
6
  Project-URL: Source, https://github.com/ComputationalBiomedicineGroup/Rectangle
@@ -36,6 +36,7 @@ Requires-Dist: numpy<2.0.0,>=1.0.0
36
36
  Requires-Dist: pydeseq2==0.4.11
37
37
  Requires-Dist: quadprog==0.1.12
38
38
  Requires-Dist: scipy==1.13.0
39
+ Requires-Dist: setuptools<70.0.0,>=69.0.0
39
40
  Requires-Dist: statsmodels>=0.14.1
40
41
  Provides-Extra: dev
41
42
  Requires-Dist: bump2version; extra == 'dev'
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ requires = ["hatchling"]
4
4
 
5
5
  [project]
6
6
  name = "rectanglepy"
7
- version = "0.5.1"
7
+ version = "0.5.2"
8
8
  description = "Hierarchical deconvolution of bulk transcriptomics"
9
9
  readme = "README.md"
10
10
  requires-python = ">=3.10"
@@ -25,7 +25,8 @@ dependencies = [
25
25
  "loguru",
26
26
  "numpy>=1.0.0,<2.0.0",
27
27
  "anndata>=0.8.0,<0.10.9",
28
- "statsmodels>=0.14.1"
28
+ "statsmodels>=0.14.1",
29
+ "setuptools>=69.0.0,<70.0.0",
29
30
 
30
31
  ]
31
32
 
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/.cruft.json RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/.editorconfig RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/.gitignore RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/CHANGELOG.md RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/LICENSE RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/README.md RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/Makefile RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/api.md RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/conf.py RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/index.md RENAMED
File without changes
{rectanglepy-0.5.1 → rectanglepy-0.5.2}/docs/make.bat RENAMED
File without changes