rectanglepy 0.0.45__tar.gz → 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.bumpversion.cfg +1 -1
  2. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/CHANGELOG.md +3 -1
  3. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/PKG-INFO +3 -3
  4. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/README.md +2 -2
  5. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/conf.py +1 -1
  6. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/pyproject.toml +1 -1
  7. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.cruft.json +0 -0
  8. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.editorconfig +0 -0
  9. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.github/ISSUE_TEMPLATE/bug_report.yml +0 -0
  10. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  11. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.github/ISSUE_TEMPLATE/feature_request.yml +0 -0
  12. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.github/PULL_REQUEST_TEMPLATE.md +0 -0
  13. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.github/workflows/build.yaml +0 -0
  14. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.github/workflows/release.yaml +0 -0
  15. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.github/workflows/test.yaml +0 -0
  16. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.gitignore +0 -0
  17. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.pre-commit-config.yaml +0 -0
  18. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/.readthedocs.yaml +0 -0
  19. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/LICENSE +0 -0
  20. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/Makefile +0 -0
  21. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/_static/.gitkeep +0 -0
  22. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/_templates/.gitkeep +0 -0
  23. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/_templates/autosummary/class.rst +0 -0
  24. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/api.md +0 -0
  25. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/changelog.md +0 -0
  26. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/contributing.md +0 -0
  27. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/extensions/typed_returns.py +0 -0
  28. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/index.md +0 -0
  29. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/make.bat +0 -0
  30. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/notebooks/example.ipynb +0 -0
  31. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/references.bib +0 -0
  32. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/references.md +0 -0
  33. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/__init__.py +0 -0
  34. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/data/hao1_annotations_small.csv +0 -0
  35. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/data/hao1_counts_small.csv +0 -0
  36. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/data/small_fino_bulks.csv +0 -0
  37. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/pp/__init__.py +0 -0
  38. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/pp/create_signature.py +0 -0
  39. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/pp/rectangle_signature.py +0 -0
  40. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/rectangle.py +0 -0
  41. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/tl/__init__.py +0 -0
  42. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/src/rectanglepy/tl/deconvolution.py +0 -0
  43. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/data/TIL10_signature.txt +0 -0
  44. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/data/bulk_small.csv +0 -0
  45. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/data/cell_annotations_small.txt +0 -0
  46. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/data/quanTIseq_SimRNAseq_mixture_smaller.csv +0 -0
  47. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/data/quanTIseq_SimRNAseq_read_fractions_small.txt +0 -0
  48. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/data/sc_object_small.csv +0 -0
  49. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/data/signature_hao1.csv +0 -0
  50. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/test_pp.py +0 -0
  51. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/test_rectangle.py +0 -0
  52. {rectanglepy-0.0.45 → rectanglepy-0.1.0}/tests/test_tl.py +0 -0
{rectanglepy-0.0.45 → rectanglepy-0.1.0}/.bumpversion.cfg RENAMED
@@ -1,5 +1,5 @@
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  [bumpversion]
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- current_version = 0.0.45
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+ current_version = 0.1.0
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  tag = True
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  commit = True
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/CHANGELOG.md RENAMED
@@ -10,6 +10,8 @@ and this project adheres to [Semantic Versioning][].
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  ## [Unreleased]
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+ ## [0.1.0] - 2024-04-25
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+
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  ### Added
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- - Basic tool, preprocessing and plotting functions
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+ - Initial public release of Rectangle.
{rectanglepy-0.0.45 → rectanglepy-0.1.0}/PKG-INFO RENAMED
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  Metadata-Version: 2.3
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  Name: rectanglepy
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- Version: 0.0.45
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+ Version: 0.1.0
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  Summary: Hierarchical deconvolution of bulk transcriptomics
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  Project-URL: Documentation, https://rectanglepy.readthedocs.io/
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  Project-URL: Source, https://github.com/ComputationalBiomedicineGroup/Rectangle
@@ -55,9 +55,9 @@ Description-Content-Type: text/markdown
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  [![Tests][badge-tests]][link-tests]
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  [![Documentation][badge-docs]][link-docs]
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- [badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
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+ [badge-tests]: https://img.shields.io/github/actions/workflow/status/ComputationalBiomedicineGroup/Rectangle/build.yaml?branch=main
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  [link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
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- [badge-docs]: https://img.shields.io/readthedocs/Rectangle
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+ [badge-docs]: https://img.shields.io/readthedocs/rectanglepy
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  Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
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  methods through its efficiency in signature creation and its handling of challenges within the deconvolution process.
{rectanglepy-0.0.45 → rectanglepy-0.1.0}/README.md RENAMED
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  [![Tests][badge-tests]][link-tests]
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  [![Documentation][badge-docs]][link-docs]
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- [badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
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+ [badge-tests]: https://img.shields.io/github/actions/workflow/status/ComputationalBiomedicineGroup/Rectangle/build.yaml?branch=main
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  [link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
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- [badge-docs]: https://img.shields.io/readthedocs/Rectangle
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+ [badge-docs]: https://img.shields.io/readthedocs/rectanglepy
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  Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
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  methods through its efficiency in signature creation and its handling of challenges within the deconvolution process.
{rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/conf.py RENAMED
@@ -34,7 +34,7 @@ needs_sphinx = "4.0"
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  html_context = {
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  "display_github": True, # Integrate GitHub
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  "github_user": "ComputationalBiomedicineGroup", # Username
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- "github_repo": "rectangle", # Repo name
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+ "github_repo": "Rectangle", # Repo name
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  "github_version": "main", # Version
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  "conf_py_path": "/docs/", # Path in the checkout to the docs root
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  }
{rectanglepy-0.0.45 → rectanglepy-0.1.0}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ requires = ["hatchling"]
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  [project]
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  name = "rectanglepy"
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- version = "0.0.45"
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+ version = "0.1.0"
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  description = "Hierarchical deconvolution of bulk transcriptomics"
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  readme = "README.md"
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  requires-python = ">=3.10"
{rectanglepy-0.0.45 → rectanglepy-0.1.0}/.cruft.json RENAMED
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/.editorconfig RENAMED
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/.gitignore RENAMED
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/LICENSE RENAMED
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/Makefile RENAMED
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/api.md RENAMED
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/index.md RENAMED
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{rectanglepy-0.0.45 → rectanglepy-0.1.0}/docs/make.bat RENAMED
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