rectanglepy 0.0.44__tar.gz → 0.1.0__tar.gz

{rectanglepy-0.0.44 → rectanglepy-0.1.0}/.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.44
+current_version = 0.1.0
 tag = True
 commit = True
 

{rectanglepy-0.0.44 → rectanglepy-0.1.0}/.readthedocs.yaml

@@ -2,8 +2,6 @@
 version: 2
 build:
     os: ubuntu-20.04
-    apt_packages:
-        - r-base
     tools:
         python: "3.10"
 sphinx:

{rectanglepy-0.0.44 → rectanglepy-0.1.0}/CHANGELOG.md

@@ -10,6 +10,8 @@ and this project adheres to [Semantic Versioning][].
 
 ## [Unreleased]
 
+## [0.1.0] - 2024-04-25
+
 ### Added
 
--   Basic tool, preprocessing and plotting functions
+-   Initial public release of Rectangle.

{rectanglepy-0.0.44 → rectanglepy-0.1.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: rectanglepy
-Version: 0.0.44
+Version: 0.1.0
 Summary: Hierarchical deconvolution of bulk  transcriptomics
 Project-URL: Documentation, https://rectanglepy.readthedocs.io/
 Project-URL: Source, https://github.com/ComputationalBiomedicineGroup/Rectangle
@@ -55,9 +55,9 @@ Description-Content-Type: text/markdown
 [![Tests][badge-tests]][link-tests]
 [![Documentation][badge-docs]][link-docs]
 
-[badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
-[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/test.yml
-[badge-docs]: https://img.shields.io/readthedocs/Rectangle
+[badge-tests]: https://img.shields.io/github/actions/workflow/status/ComputationalBiomedicineGroup/Rectangle/build.yaml?branch=main
+[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
+[badge-docs]: https://img.shields.io/readthedocs/rectanglepy
 
 Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
 methods through its efficiency in signature creation and its handling of challenges within the deconvolution process.
@@ -99,4 +99,4 @@ If you found a bug, please use the [issue tracker][issue-tracker].
 [issue-tracker]: https://github.com/ComputationalBiomedicineGroup/Rectangle/issues
 [changelog]: https://Rectanglepy.readthedocs.io/latest/changelog.html
 [link-docs]: https://Rectanglepy.readthedocs.io
-[link-api]: https://Rectanglepy.readthedocs.io/latest/api.html
+[link-api]: https://rectanglepy.readthedocs.io/api.html

{rectanglepy-0.0.44 → rectanglepy-0.1.0}/README.md

@@ -3,9 +3,9 @@
 [![Tests][badge-tests]][link-tests]
 [![Documentation][badge-docs]][link-docs]
 
-[badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
-[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/test.yml
-[badge-docs]: https://img.shields.io/readthedocs/Rectangle
+[badge-tests]: https://img.shields.io/github/actions/workflow/status/ComputationalBiomedicineGroup/Rectangle/build.yaml?branch=main
+[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
+[badge-docs]: https://img.shields.io/readthedocs/rectanglepy
 
 Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
 methods through its efficiency in signature creation and its handling of challenges within the deconvolution process.
@@ -47,4 +47,4 @@ If you found a bug, please use the [issue tracker][issue-tracker].
 [issue-tracker]: https://github.com/ComputationalBiomedicineGroup/Rectangle/issues
 [changelog]: https://Rectanglepy.readthedocs.io/latest/changelog.html
 [link-docs]: https://Rectanglepy.readthedocs.io
-[link-api]: https://Rectanglepy.readthedocs.io/latest/api.html
+[link-api]: https://rectanglepy.readthedocs.io/api.html

{rectanglepy-0.0.44 → rectanglepy-0.1.0}/docs/conf.py

@@ -16,7 +16,7 @@ sys.path.insert(0, str(HERE / "extensions"))
 
 # -- Project information -----------------------------------------------------
 
-info = metadata("rectangle")
+info = metadata("rectanglepy")
 project_name = info["Name"]
 author = info["Author"]
 copyright = f"{datetime.now():%Y}, {author}."
@@ -33,8 +33,8 @@ needs_sphinx = "4.0"
 
 html_context = {
     "display_github": True,  # Integrate GitHub
-    "github_user": "bernheder",  # Username
-    "github_repo": project_name,  # Repo name
+    "github_user": "ComputationalBiomedicineGroup",  # Username
+    "github_repo": "Rectangle",  # Repo name
     "github_version": "main",  # Version
     "conf_py_path": "/docs/",  # Path in the checkout to the docs root
 }
@@ -106,7 +106,7 @@ exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"]
 #
 html_theme = "sphinx_book_theme"
 html_static_path = ["_static"]
-html_title = project_name
+html_title = "rectangle"
 
 html_theme_options = {
     "repository_url": repository_url,

{rectanglepy-0.0.44 → rectanglepy-0.1.0}/pyproject.toml

@@ -4,7 +4,7 @@ requires = ["hatchling"]
 
 [project]
 name = "rectanglepy"
-version = "0.0.44"
+version = "0.1.0"
 description = "Hierarchical deconvolution of bulk  transcriptomics"
 readme = "README.md"
 requires-python = ">=3.10"