rectanglepy 0.0.44__tar.gz → 0.0.45__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.bumpversion.cfg +1 -1
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.readthedocs.yaml +0 -2
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/PKG-INFO +3 -3
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/README.md +2 -2
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/conf.py +4 -4
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/pyproject.toml +1 -1
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.cruft.json +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.editorconfig +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.github/ISSUE_TEMPLATE/bug_report.yml +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.github/ISSUE_TEMPLATE/config.yml +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.github/ISSUE_TEMPLATE/feature_request.yml +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.github/PULL_REQUEST_TEMPLATE.md +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.github/workflows/build.yaml +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.github/workflows/release.yaml +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.github/workflows/test.yaml +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.gitignore +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/.pre-commit-config.yaml +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/CHANGELOG.md +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/LICENSE +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/Makefile +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/_static/.gitkeep +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/_templates/.gitkeep +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/_templates/autosummary/class.rst +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/api.md +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/changelog.md +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/contributing.md +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/extensions/typed_returns.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/index.md +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/make.bat +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/notebooks/example.ipynb +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/references.bib +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/docs/references.md +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/__init__.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/data/hao1_annotations_small.csv +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/data/hao1_counts_small.csv +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/data/small_fino_bulks.csv +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/pp/__init__.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/pp/create_signature.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/pp/rectangle_signature.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/rectangle.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/tl/__init__.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/src/rectanglepy/tl/deconvolution.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/TIL10_signature.txt +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/bulk_small.csv +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/cell_annotations_small.txt +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/quanTIseq_SimRNAseq_mixture_smaller.csv +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/quanTIseq_SimRNAseq_read_fractions_small.txt +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/sc_object_small.csv +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/signature_hao1.csv +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/test_pp.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/test_rectangle.py +0 -0
- {rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/test_tl.py +0 -0
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Metadata-Version: 2.3
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Name: rectanglepy
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Version: 0.0.
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Version: 0.0.45
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Summary: Hierarchical deconvolution of bulk transcriptomics
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Project-URL: Documentation, https://rectanglepy.readthedocs.io/
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Project-URL: Source, https://github.com/ComputationalBiomedicineGroup/Rectangle
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[![Documentation][badge-docs]][link-docs]
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[badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
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[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/
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[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
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[badge-docs]: https://img.shields.io/readthedocs/Rectangle
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Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
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@@ -99,4 +99,4 @@ If you found a bug, please use the [issue tracker][issue-tracker].
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[issue-tracker]: https://github.com/ComputationalBiomedicineGroup/Rectangle/issues
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[changelog]: https://Rectanglepy.readthedocs.io/latest/changelog.html
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[link-docs]: https://Rectanglepy.readthedocs.io
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[link-api]: https://
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[link-api]: https://rectanglepy.readthedocs.io/api.html
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[![Documentation][badge-docs]][link-docs]
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[badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
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[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/
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[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
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[badge-docs]: https://img.shields.io/readthedocs/Rectangle
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Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
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[issue-tracker]: https://github.com/ComputationalBiomedicineGroup/Rectangle/issues
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[changelog]: https://Rectanglepy.readthedocs.io/latest/changelog.html
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[link-docs]: https://Rectanglepy.readthedocs.io
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[link-api]: https://
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[link-api]: https://rectanglepy.readthedocs.io/api.html
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# -- Project information -----------------------------------------------------
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info = metadata("
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info = metadata("rectanglepy")
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project_name = info["Name"]
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author = info["Author"]
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copyright = f"{datetime.now():%Y}, {author}."
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html_context = {
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"display_github": True, # Integrate GitHub
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"github_user": "
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"github_user": "ComputationalBiomedicineGroup", # Username
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"github_repo": "rectangle", # Repo name
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"github_version": "main", # Version
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"conf_py_path": "/docs/", # Path in the checkout to the docs root
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}
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#
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html_theme = "sphinx_book_theme"
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html_static_path = ["_static"]
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html_title =
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html_title = "rectangle"
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html_theme_options = {
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{rectanglepy-0.0.44 → rectanglepy-0.0.45}/tests/data/quanTIseq_SimRNAseq_mixture_smaller.csv
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