PyPI - rectanglepy - Versions diffs - 0.0.43__tar.gz → 0.0.45__tar.gz - Mend

rectanglepy 0.0.43tar.gz → 0.0.45tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (52) hide show

{rectanglepy-0.0.43 → rectanglepy-0.0.45}/.bumpversion.cfg RENAMED Viewed

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.43
+current_version = 0.0.45
 tag = True
 commit = True

{rectanglepy-0.0.43 → rectanglepy-0.0.45}/.cruft.json RENAMED Viewed

@@ -10,7 +10,7 @@
             "author_full_name": "Bernhard Eder",
             "author_email": "yourname@example.com",
             "github_user": "bernheder",
-            "project_repo": "https://github.com/bernheder/Rectangle",
+            "project_repo": "https://github.com/ComputationalBiomedicineGroup/Rectangle",
             "license": "MIT License",
             "_copy_without_render": [
                 ".github/workflows/**.yaml",

{rectanglepy-0.0.43 → rectanglepy-0.0.45}/.readthedocs.yaml RENAMED Viewed

@@ -2,8 +2,6 @@
 version: 2
 build:
     os: ubuntu-20.04
-    apt_packages:
-        - r-base
     tools:
         python: "3.10"
 sphinx:

{rectanglepy-0.0.43 → rectanglepy-0.0.45}/PKG-INFO RENAMED Viewed

@@ -1,10 +1,10 @@
 Metadata-Version: 2.3
 Name: rectanglepy
-Version: 0.0.43
-Summary: A very interesting piece of code
+Version: 0.0.45
+Summary: Hierarchical deconvolution of bulk  transcriptomics
 Project-URL: Documentation, https://rectanglepy.readthedocs.io/
-Project-URL: Source, https://github.com/bernheder/Rectangle
-Project-URL: Home-page, https://github.com/bernheder/Rectangle
+Project-URL: Source, https://github.com/ComputationalBiomedicineGroup/Rectangle
+Project-URL: Home-page, https://github.com/ComputationalBiomedicineGroup/Rectangle
 Author: Bernhard Eder
 Maintainer-email: Bernhard Eder <Bernhard.Eder@student.uibk.ac.at>
 License: MIT License
@@ -56,7 +56,7 @@ Description-Content-Type: text/markdown
 [![Documentation][badge-docs]][link-docs]
 [badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
-[link-tests]: https://github.com/bernheder/Rectangle/actions/workflows/test.yml
+[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
 [badge-docs]: https://img.shields.io/readthedocs/Rectangle
 Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
@@ -77,13 +77,11 @@ Python installed, we recommend installing [Mambaforge](https://github.com/conda-
 How to install Rectangle:
-<!--
-1) Install the latest release of `Rectangle` from `PyPI <https://pypi.org/project/rectanglepy/>`_:
+Install the latest release of `Rectangle` from `PyPI <https://pypi.org/project/rectanglepy/>`:
 ```bash
 pip install rectanglepy
 ```
--->
 ## Release notes
@@ -98,7 +96,7 @@ If you found a bug, please use the [issue tracker][issue-tracker].
 > t.b.a
 [scverse-discourse]: https://discourse.scverse.org/
-[issue-tracker]: https://github.com/bernheder/Rectangle/issues
+[issue-tracker]: https://github.com/ComputationalBiomedicineGroup/Rectangle/issues
 [changelog]: https://Rectanglepy.readthedocs.io/latest/changelog.html
 [link-docs]: https://Rectanglepy.readthedocs.io
-[link-api]: https://Rectanglepy.readthedocs.io/latest/api.html
+[link-api]: https://rectanglepy.readthedocs.io/api.html

{rectanglepy-0.0.43 → rectanglepy-0.0.45}/README.md RENAMED Viewed

@@ -4,7 +4,7 @@
 [![Documentation][badge-docs]][link-docs]
 [badge-tests]: https://img.shields.io/github/actions/workflow/status/bernheder/Rectangle/test.yaml?branch=main
-[link-tests]: https://github.com/bernheder/Rectangle/actions/workflows/test.yml
+[link-tests]: https://github.com/ComputationalBiomedicineGroup/Rectangle/actions/workflows/build.yaml
 [badge-docs]: https://img.shields.io/readthedocs/Rectangle
 Rectangle embodies a ”second-generation” deconvolution methodology, setting itself apart from other second-generation
@@ -25,13 +25,11 @@ Python installed, we recommend installing [Mambaforge](https://github.com/conda-
 How to install Rectangle:
-<!--
-1) Install the latest release of `Rectangle` from `PyPI <https://pypi.org/project/rectanglepy/>`_:
+Install the latest release of `Rectangle` from `PyPI <https://pypi.org/project/rectanglepy/>`:
 ```bash
 pip install rectanglepy
 ```
--->
 ## Release notes
@@ -46,7 +44,7 @@ If you found a bug, please use the [issue tracker][issue-tracker].
 > t.b.a
 [scverse-discourse]: https://discourse.scverse.org/
-[issue-tracker]: https://github.com/bernheder/Rectangle/issues
+[issue-tracker]: https://github.com/ComputationalBiomedicineGroup/Rectangle/issues
 [changelog]: https://Rectanglepy.readthedocs.io/latest/changelog.html
 [link-docs]: https://Rectanglepy.readthedocs.io
-[link-api]: https://Rectanglepy.readthedocs.io/latest/api.html
+[link-api]: https://rectanglepy.readthedocs.io/api.html

{rectanglepy-0.0.43 → rectanglepy-0.0.45}/docs/conf.py RENAMED Viewed

@@ -21,7 +21,7 @@ project_name = info["Name"]
 author = info["Author"]
 copyright = f"{datetime.now():%Y}, {author}."
 version = info["Version"]
-repository_url = f"https://github.com/bernheder/{project_name}"
+repository_url = "https://github.com/ComputationalBiomedicineGroup/Rectangle"
 # The full version, including alpha/beta/rc tags
 release = info["Version"]
@@ -33,8 +33,8 @@ needs_sphinx = "4.0"
 html_context = {
     "display_github": True,  # Integrate GitHub
-    "github_user": "bernheder",  # Username
-    "github_repo": project_name,  # Repo name
+    "github_user": "ComputationalBiomedicineGroup",  # Username
+    "github_repo": "rectangle",  # Repo name
     "github_version": "main",  # Version
     "conf_py_path": "/docs/",  # Path in the checkout to the docs root
 }
@@ -106,7 +106,7 @@ exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"]
 #
 html_theme = "sphinx_book_theme"
 html_static_path = ["_static"]
-html_title = project_name
+html_title = "rectangle"
 html_theme_options = {
     "repository_url": repository_url,

{rectanglepy-0.0.43 → rectanglepy-0.0.45}/pyproject.toml RENAMED Viewed

@@ -4,8 +4,8 @@ requires = ["hatchling"]
 [project]
 name = "rectanglepy"
-version = "0.0.43"
-description = "A very interesting piece of code"
+version = "0.0.45"
+description = "Hierarchical deconvolution of bulk  transcriptomics"
 readme = "README.md"
 requires-python = ">=3.10"
 license = {file = "LICENSE"}
@@ -16,8 +16,8 @@ maintainers = [
     {name = "Bernhard Eder", email = "Bernhard.Eder@student.uibk.ac.at"},
 ]
 urls.Documentation = "https://rectanglepy.readthedocs.io/"
-urls.Source = "https://github.com/bernheder/Rectangle"
-urls.Home-page = "https://github.com/bernheder/Rectangle"
+urls.Source = "https://github.com/ComputationalBiomedicineGroup/Rectangle"
+urls.Home-page = "https://github.com/ComputationalBiomedicineGroup/Rectangle"
 dependencies = [
     "pydeseq2==0.4.1",
     "quadprog==0.1.11",