reasoner-validator 4.0.0__tar.gz → 4.0.2__tar.gz

{reasoner_validator-4.0.0 → reasoner_validator-4.0.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: reasoner-validator
-Version: 4.0.0
+Version: 4.0.2
 Summary: Validation tools for Reasoner API
 Home-page: https://github.com/NCATSTranslator
 License: MIT
@@ -9,12 +9,11 @@ Author: Richard Bruskiewich
 Author-email: richard.bruskiewich@delphinai.com
 Maintainer: Richard Bruskiewich
 Maintainer-email: richard.bruskiewich@delphinai.com
-Requires-Python: >=3.9,<4.0
+Requires-Python: >=3.10,<4.0
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
@@ -22,9 +21,10 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
 Provides-Extra: docs
 Provides-Extra: web
 Requires-Dist: PyYAML (>=6.0,<7.0)
-Requires-Dist: bmt (>=1.1.4,<2.0.0)
+Requires-Dist: bioregistry (>=0.11.1,<0.12.0)
+Requires-Dist: bmt (>=1.4.0,<2.0.0)
 Requires-Dist: dictdiffer (>=0.9.0,<0.10.0)
-Requires-Dist: fastapi (>=0.85.0,<0.86.0) ; extra == "web"
+Requires-Dist: fastapi ; extra == "web"
 Requires-Dist: httpx (>=0.18.2,<0.19.0) ; extra == "web"
 Requires-Dist: jsonschema (>=4.17.3,<4.18.0)
 Requires-Dist: myst-parser (>=2.0.0,<3.0.0) ; extra == "docs"
@@ -32,7 +32,7 @@ Requires-Dist: numpydoc (>=1.5.0,<2.0.0) ; extra == "docs"
 Requires-Dist: opentelemetry-exporter-otlp-proto-http ; extra == "web"
 Requires-Dist: opentelemetry-instrumentation-fastapi ; extra == "web"
 Requires-Dist: opentelemetry-instrumentation-httpx ; extra == "web"
-Requires-Dist: pydantic (>=1.10.13,<2.0.0)
+Requires-Dist: pydantic (>=2,<3)
 Requires-Dist: pytest (>=7.2.2,<8.0.0)
 Requires-Dist: pytest-cov (>=4.0.0,<5.0.0)
 Requires-Dist: requests (>=2.28.1,<3.0.0)
@@ -115,7 +115,7 @@ For script usage, type:
 
 ## Running tests
 
-To run the test locally install with the `dev` dependencies group if not already done:
+To run the test locally install with the `dev` dependencies, if not already done (e.g. by **`--all-extras`** above):
 
 ```bash
 poetry install --extras dev
@@ -158,7 +158,7 @@ python -m http.server 3000 --directory ./htmlcov
 
 All paths here are relative to the root project directory.
 
-First install the documentation-specific dependencies.
+First install the documentation-specific dependencies, if not already done (e.g. by **`--all-extras`** above):
 
 ```bash
 poetry install --extras docs  # or poetry install --all-extras
@@ -212,7 +212,7 @@ The request body consists of JSON data structure with two top level tag:
 
 ### Running the Web Service Directly
 
-First install the web-specific dependencies.
+First install the web-specific dependencies, if not already done (e.g. by **`--all-extras`** above):
 
 ```bash
 poetry install --extras web  # or poetry install --all-extras

{reasoner_validator-4.0.0 → reasoner_validator-4.0.2}/README.md

@@ -67,7 +67,7 @@ For script usage, type:
 
 ## Running tests
 
-To run the test locally install with the `dev` dependencies group if not already done:
+To run the test locally install with the `dev` dependencies, if not already done (e.g. by **`--all-extras`** above):
 
 ```bash
 poetry install --extras dev
@@ -110,7 +110,7 @@ python -m http.server 3000 --directory ./htmlcov
 
 All paths here are relative to the root project directory.
 
-First install the documentation-specific dependencies.
+First install the documentation-specific dependencies, if not already done (e.g. by **`--all-extras`** above):
 
 ```bash
 poetry install --extras docs  # or poetry install --all-extras
@@ -164,7 +164,7 @@ The request body consists of JSON data structure with two top level tag:
 
 ### Running the Web Service Directly
 
-First install the web-specific dependencies.
+First install the web-specific dependencies, if not already done (e.g. by **`--all-extras`** above):
 
 ```bash
 poetry install --extras web  # or poetry install --all-extras

{reasoner_validator-4.0.0 → reasoner_validator-4.0.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "reasoner-validator"
-version = "4.0.0"
+version = "4.0.2"
 description = "Validation tools for Reasoner API"
 authors = [
     "Richard Bruskiewich <richard.bruskiewich@delphinai.com>",
@@ -40,9 +40,10 @@ include = [
 ]
 
 [tool.poetry.dependencies]
-python = "^3.9"
-bmt = "^1.1.4"
+python = "^3.10"
+bmt = "^1.4.0"
 #bmt = { git = "https://github.com/biolink/biolink-model-toolkit.git" }
+bioregistry = "^0.11.1"
 
 # jsonschema needs to be pinned to <= 4.18.0 for now,
 # since 4.18.0 appeared to break something for the
@@ -51,12 +52,12 @@ jsonschema = "~4.17.3"
 dictdiffer = "^0.9.0"
 PyYAML = "^6.0"
 requests = "^2.28.1"
-pydantic = "^1.10.13"
+pydantic = "^2"
 urllib3 = "^1.26.15"
 numpydoc = {version = "^1.5.0", optional = true}
 sphinx = {version = "^6.2.1", optional = true}
 myst-parser = {version = "^2.0.0", optional = true}
-fastapi = {version = "^0.85.0", optional = true}
+fastapi = {version = "*", optional = true}
 uvicorn = {version = "*", optional = true}
 pytest-cov = {version = "^4.0.0"}
 pytest = {version = "^7.2.2"}
@@ -73,6 +74,7 @@ opentelemetry-exporter-otlp-proto-http = {version = "*", optional = true}
 opentelemetry-instrumentation-fastapi = {version = "*", optional = true}
 opentelemetry-instrumentation-httpx = {version = "*", optional = true}
 
+
 [tool.poetry.urls]
 "Change Log" = "https://github.com/NCATSTranslator/reasoner-validator/blob/master/CHANGELOG.md"
 "Bug Tracker" = "https://github.com/NCATSTranslator/reasoner-validator/issues"
@@ -81,6 +83,9 @@ opentelemetry-instrumentation-httpx = {version = "*", optional = true}
 docs = ["numpydoc", "sphinx", "myst-parser", "sphinx-rtd-theme"]
 web = ["fastapi", "uvicorn", "httpx", "opentelemetry-exporter-otlp-proto-http", "opentelemetry-instrumentation-fastapi", "opentelemetry-instrumentation-httpx"]
 
+[tool.poetry.group.dev.dependencies]
+setuptools = "^69.5.1"
+
 [tool.coverage.run]
 source = ["reasoner_validator"]