reader-workbench 1.0.0__tar.gz → 1.0.1__tar.gz

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Files changed (302) hide show
  1. {reader_workbench-1.0.0/src/reader_workbench.egg-info → reader_workbench-1.0.1}/PKG-INFO +2 -2
  2. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/README.md +1 -1
  3. reader_workbench-1.0.1/assets/reader-banner.png +0 -0
  4. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/pyproject.toml +1 -1
  5. {reader_workbench-1.0.0 → reader_workbench-1.0.1/src/reader_workbench.egg-info}/PKG-INFO +2 -2
  6. reader_workbench-1.0.0/assets/reader-banner.png +0 -0
  7. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/CITATION.cff +0 -0
  8. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/LICENSE +0 -0
  9. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/MANIFEST.in +0 -0
  10. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/setup.cfg +0 -0
  11. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/__init__.py +0 -0
  12. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/__main__.py +0 -0
  13. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/_version.py +0 -0
  14. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/api/__init__.py +0 -0
  15. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/api/_record_reads.py +0 -0
  16. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/api/artifacts.py +0 -0
  17. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/api/facade.py +0 -0
  18. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/api/models.py +0 -0
  19. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/api/notebooks.py +0 -0
  20. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/__init__.py +0 -0
  21. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/builtins/__init__.py +0 -0
  22. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/builtins/cytometry.py +0 -0
  23. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/builtins/four_state_event_window.py +0 -0
  24. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/builtins/generic.py +0 -0
  25. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/builtins/logic.py +0 -0
  26. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/builtins/plate_reader.py +0 -0
  27. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/catalog.py +0 -0
  28. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/contracts/model.py +0 -0
  29. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/__init__.py +0 -0
  30. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/__init__.py +0 -0
  31. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/analysis/__init__.py +0 -0
  32. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/analysis/events.py +0 -0
  33. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/analysis/gating.py +0 -0
  34. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/analysis/workflow.py +0 -0
  35. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/io/__init__.py +0 -0
  36. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/io/fcs.py +0 -0
  37. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/plots/__init__.py +0 -0
  38. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/cytometry/plots/diagnostic.py +0 -0
  39. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/__init__.py +0 -0
  40. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/crosstalk/__init__.py +0 -0
  41. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/crosstalk/pairs.py +0 -0
  42. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/__init__.py +0 -0
  43. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/builder.py +0 -0
  44. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/collection/__init__.py +0 -0
  45. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/collection/checks.py +0 -0
  46. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/collection/constants.py +0 -0
  47. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/collection/model.py +0 -0
  48. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/collection/render.py +0 -0
  49. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/collection/sources.py +0 -0
  50. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/config.py +0 -0
  51. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/diagnostic.py +0 -0
  52. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/heatmap.py +0 -0
  53. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/math.py +0 -0
  54. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/reference.py +0 -0
  55. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/selection.py +0 -0
  56. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/treatment_semantics.py +0 -0
  57. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/four_state_vector/validation.py +0 -0
  58. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/__init__.py +0 -0
  59. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/encodings.py +0 -0
  60. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/extract_corners.py +0 -0
  61. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/main.py +0 -0
  62. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/metrics.py +0 -0
  63. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/overlay.py +0 -0
  64. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/prep.py +0 -0
  65. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/logic_symmetry/render.py +0 -0
  66. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/logic/treatment_columns.py +0 -0
  67. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/__init__.py +0 -0
  68. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/__init__.py +0 -0
  69. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/fold_change.py +0 -0
  70. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/__init__.py +0 -0
  71. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/aggregation.py +0 -0
  72. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/contract_fields.py +0 -0
  73. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/contracts.py +0 -0
  74. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/design_dispositions.py +0 -0
  75. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/disposition_records.py +0 -0
  76. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/event_sensitivity.py +0 -0
  77. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/materialize.py +0 -0
  78. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/observation_resampling.py +0 -0
  79. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/reduction.py +0 -0
  80. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/seeds.py +0 -0
  81. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/sources.py +0 -0
  82. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/well_exclusion_validation.py +0 -0
  83. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/four_state_event_window/well_exclusions.py +0 -0
  84. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/analysis/timepoints.py +0 -0
  85. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/io/__init__.py +0 -0
  86. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/io/sample_map.py +0 -0
  87. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/io/synergy_h1/__init__.py +0 -0
  88. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/io/synergy_h1/_kinetic.py +0 -0
  89. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/io/synergy_h1/_parser.py +0 -0
  90. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/io/synergy_h1/_shared.py +0 -0
  91. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/io/synergy_h1/_snapshot.py +0 -0
  92. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/ordering.py +0 -0
  93. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/__init__.py +0 -0
  94. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/_data.py +0 -0
  95. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/common.py +0 -0
  96. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/distributions.py +0 -0
  97. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/dual_reporter_triptych.py +0 -0
  98. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/dual_reporter_triptych_render.py +0 -0
  99. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/four_state_event_window/__init__.py +0 -0
  100. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic.py +0 -0
  101. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic_components.py +0 -0
  102. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic_render.py +0 -0
  103. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/four_state_event_window/diagnostic_style.py +0 -0
  104. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/four_state_event_window/schema.py +0 -0
  105. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/four_state_event_window/summary.py +0 -0
  106. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/grouping.py +0 -0
  107. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/panels/__init__.py +0 -0
  108. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/panels/snapshot.py +0 -0
  109. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/panels/snapshot_data.py +0 -0
  110. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/panels/time_series.py +0 -0
  111. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/single_reporter_diagnostic.py +0 -0
  112. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/single_reporter_diagnostic_render.py +0 -0
  113. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/snapshot_barplot/__init__.py +0 -0
  114. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/snapshot_barplot/planning.py +0 -0
  115. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/snapshot_heatmap/__init__.py +0 -0
  116. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/snapshot_heatmap/inputs.py +0 -0
  117. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/time_series.py +0 -0
  118. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/ts_and_snap/__init__.py +0 -0
  119. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/plate_reader/plots/ts_and_snap/planning.py +0 -0
  120. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/time_series/__init__.py +0 -0
  121. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/time_series/aggregation.py +0 -0
  122. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/time_series/contracts.py +0 -0
  123. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/domains/time_series/reduction.py +0 -0
  124. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/errors.py +0 -0
  125. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/maintenance/__init__.py +0 -0
  126. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/maintenance/docs.py +0 -0
  127. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/maintenance/model.py +0 -0
  128. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/maintenance/release.py +0 -0
  129. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/maintenance/skills.py +0 -0
  130. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plotting/__init__.py +0 -0
  131. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plotting/mpl.py +0 -0
  132. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plotting/sinks.py +0 -0
  133. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plotting/style.py +0 -0
  134. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plotting/utils.py +0 -0
  135. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/__init__.py +0 -0
  136. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/catalog.py +0 -0
  137. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/export/__init__.py +0 -0
  138. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/export/_paths.py +0 -0
  139. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/export/csv.py +0 -0
  140. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/export/xlsx.py +0 -0
  141. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/ingest/__init__.py +0 -0
  142. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/ingest/_discovery.py +0 -0
  143. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/ingest/discovery_policy.py +0 -0
  144. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/ingest/flow_cytometer.py +0 -0
  145. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/ingest/synergy_h1.py +0 -0
  146. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/manifests/__init__.py +0 -0
  147. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/manifests/export.py +0 -0
  148. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/manifests/ingest.py +0 -0
  149. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/manifests/plot.py +0 -0
  150. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/manifests/transform.py +0 -0
  151. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/manifests/validator.py +0 -0
  152. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/plot/__init__.py +0 -0
  153. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/plot/_shared.py +0 -0
  154. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/plot/cytometry_diagnostic.py +0 -0
  155. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/plot/distributions.py +0 -0
  156. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/plot/dual_reporter_triptych.py +0 -0
  157. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/plot/four_state_event_window_diagnostic.py +0 -0
  158. {reader_workbench-1.0.0 → reader_workbench-1.0.1}/src/reader_workbench/plugins/plot/four_state_event_window_summary.py +0 -0
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- # ![Reader data workbench](https://raw.githubusercontent.com/e-south/reader/v1.0.0/assets/reader-banner.png)
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+ # ![Reader data workbench](https://raw.githubusercontent.com/e-south/reader/v1.0.1/assets/reader-banner.png)
38
38
 
39
39
  [![Checks](https://github.com/e-south/reader/actions/workflows/checks.yaml/badge.svg?branch=main)](https://github.com/e-south/reader/actions/workflows/checks.yaml)
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  [![Python 3.12](https://img.shields.io/badge/python-3.12-3776AB.svg)](https://www.python.org/downloads/release/python-3120/)