rdworks 0.25.7__tar.gz → 0.25.8__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {rdworks-0.25.7 → rdworks-0.25.8}/PKG-INFO +3 -3
- {rdworks-0.25.7 → rdworks-0.25.8}/pyproject.toml +1 -3
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/__init__.py +1 -1
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/conf.py +3 -3
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/mol.py +2 -5
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/mollibr.py +0 -2
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/PKG-INFO +3 -3
- {rdworks-0.25.7 → rdworks-0.25.8}/LICENSE +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/README.md +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/setup.cfg +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/__init__.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/autograph.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/centroid.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/dynamictreecut.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/nmrclust.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/rckmeans.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/bitqt/__init__.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/bitqt/bitqt.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/descriptor.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/display.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/ionized.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/matchedseries.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/pka.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Asinex_fragment.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Astex_RO3.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/Baell2010A.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/Baell2010B.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/Baell2010C.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/PAINS-less-than-015-hits.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/PAINS-less-than-150-hits.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/PAINS-more-than-150-hits.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/makexml.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Brenk2008_Dundee/makexml.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/CNS.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/BMS.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/Dundee.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/Glaxo.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/Inpharmatica.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/LINT.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/MLSMR.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/PAINS.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/SureChEMBL.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/makexml.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999Acid.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999Base.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999ElPh.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999NuPh.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/makexml.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Kazius2005/Kazius2005.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Kazius2005/makexml.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ZINC_druglike.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ZINC_fragment.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ZINC_leadlike.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/fragment.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ionized/simple_smarts_pattern.csv +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ionized/smarts_pattern.csv +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/makexml.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/reactive-part-2.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/reactive-part-3.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/reactive.xml +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/readin.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/rgroup.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/scaffold.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/std.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/stereoisomers.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/tautomers.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/units.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/utils.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/xml.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/SOURCES.txt +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/dependency_links.txt +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/requires.txt +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/top_level.txt +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_basics.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_nn_xtb.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_states.py +0 -0
- {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_web.py +0 -0
@@ -1,7 +1,7 @@
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Metadata-Version: 2.4
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Name: rdworks
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Version: 0.25.
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Summary:
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Version: 0.25.8
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Summary: Routines built on RDKit
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Author-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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Maintainer-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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License-Expression: MIT
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@@ -10,7 +10,7 @@ Project-URL: Repository, https://github.com/sunghunbae/rdworks.git
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Project-URL: Issues, https://github.com/sunghunbae/rdworks/issues
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Project-URL: Changelog, https://github.com/sunghunbae/rdworks/blob/master/CHANGELOG.md
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Project-URL: Documentation, https://sunghunbae.github.io/rdworks/
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Keywords:
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Keywords: cheminformatics,rdkit
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Classifier: Development Status :: 3 - Alpha
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Classifier: Intended Audience :: Developers
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Classifier: Programming Language :: Python :: 3
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]
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authors = [{name = "Sung-Hun Bae", email="sunghun.bae@gmail.com"}, ]
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maintainers = [{name = "Sung-Hun Bae", email="sunghun.bae@gmail.com"}, ]
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description = "
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description = "Routines built on RDKit"
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readme = "README.md"
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license = "MIT"
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keywords = [
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"neural-network-potential",
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"cheminformatics",
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"rdkit",
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]
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where = ["src"]
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[tool.setuptools.package-data]
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"rdworks.auto3d.models" = [ "*" ]
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"rdworks.predefined" = [ "*.xml" ]
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"rdworks.predefined.Baell2010_PAINS" = [ "*.xml" ]
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"rdworks.predefined.ChEMBL_Walters" = [ "*.xml" ]
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import io
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import copy
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import json
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import types
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import numpy as np
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import ase
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from typing import List, Optional, Union, Self
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from .units import ev2kcalpermol
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from .
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from rdworks.units import ev2kcalpermol
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from rdworks.units import radii
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class Conf:
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"""Container for 3D conformers.
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# rdworks/mol.py
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import logging
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Draw, rdDepictor,
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rdDistGeom, rdMolAlign, rdMolTransforms, rdmolops
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from rdkit.Chem.Draw import rdMolDraw2D
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from rdkit.ML.Cluster import Butina
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from rdworks.conf import Conf
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main_logger = logging.getLogger()
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from rdworks.mol import Mol
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from rdworks.utils import precheck_path, guess_mol_id
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class MolLibr:
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Name: rdworks
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Version: 0.25.
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Version: 0.25.8
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Summary: Routines built on RDKit
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Author-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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Maintainer-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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Project-URL: Issues, https://github.com/sunghunbae/rdworks/issues
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Project-URL: Documentation, https://sunghunbae.github.io/rdworks/
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Keywords: cheminformatics,rdkit
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Classifier: Development Status :: 3 - Alpha
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Classifier: Intended Audience :: Developers
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