rdworks 0.25.7__tar.gz → 0.25.8__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (78) hide show
  1. {rdworks-0.25.7 → rdworks-0.25.8}/PKG-INFO +3 -3
  2. {rdworks-0.25.7 → rdworks-0.25.8}/pyproject.toml +1 -3
  3. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/__init__.py +1 -1
  4. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/conf.py +3 -3
  5. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/mol.py +2 -5
  6. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/mollibr.py +0 -2
  7. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/PKG-INFO +3 -3
  8. {rdworks-0.25.7 → rdworks-0.25.8}/LICENSE +0 -0
  9. {rdworks-0.25.7 → rdworks-0.25.8}/README.md +0 -0
  10. {rdworks-0.25.7 → rdworks-0.25.8}/setup.cfg +0 -0
  11. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/__init__.py +0 -0
  12. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/autograph.py +0 -0
  13. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/centroid.py +0 -0
  14. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/dynamictreecut.py +0 -0
  15. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/nmrclust.py +0 -0
  16. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/autograph/rckmeans.py +0 -0
  17. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/bitqt/__init__.py +0 -0
  18. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/bitqt/bitqt.py +0 -0
  19. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/descriptor.py +0 -0
  20. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/display.py +0 -0
  21. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/ionized.py +0 -0
  22. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/matchedseries.py +0 -0
  23. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/pka.py +0 -0
  24. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Asinex_fragment.xml +0 -0
  25. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Astex_RO3.xml +0 -0
  26. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/Baell2010A.xml +0 -0
  27. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/Baell2010B.xml +0 -0
  28. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/Baell2010C.xml +0 -0
  29. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/PAINS-less-than-015-hits.xml +0 -0
  30. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/PAINS-less-than-150-hits.xml +0 -0
  31. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/PAINS-more-than-150-hits.xml +0 -0
  32. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Baell2010_PAINS/makexml.py +0 -0
  33. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Brenk2008_Dundee/makexml.py +0 -0
  34. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/CNS.xml +0 -0
  35. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/BMS.xml +0 -0
  36. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/Dundee.xml +0 -0
  37. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/Glaxo.xml +0 -0
  38. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/Inpharmatica.xml +0 -0
  39. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/LINT.xml +0 -0
  40. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/MLSMR.xml +0 -0
  41. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/PAINS.xml +0 -0
  42. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/SureChEMBL.xml +0 -0
  43. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ChEMBL_Walters/makexml.py +0 -0
  44. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999.xml +0 -0
  45. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999Acid.xml +0 -0
  46. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999Base.xml +0 -0
  47. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999ElPh.xml +0 -0
  48. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/Hann1999NuPh.xml +0 -0
  49. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Hann1999_Glaxo/makexml.py +0 -0
  50. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Kazius2005/Kazius2005.xml +0 -0
  51. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/Kazius2005/makexml.py +0 -0
  52. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ZINC_druglike.xml +0 -0
  53. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ZINC_fragment.xml +0 -0
  54. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ZINC_leadlike.xml +0 -0
  55. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/fragment.xml +0 -0
  56. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ionized/simple_smarts_pattern.csv +0 -0
  57. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/ionized/smarts_pattern.csv +0 -0
  58. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/makexml.py +0 -0
  59. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/reactive-part-2.xml +0 -0
  60. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/reactive-part-3.xml +0 -0
  61. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/predefined/misc/reactive.xml +0 -0
  62. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/readin.py +0 -0
  63. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/rgroup.py +0 -0
  64. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/scaffold.py +0 -0
  65. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/std.py +0 -0
  66. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/stereoisomers.py +0 -0
  67. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/tautomers.py +0 -0
  68. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/units.py +0 -0
  69. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/utils.py +0 -0
  70. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks/xml.py +0 -0
  71. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/SOURCES.txt +0 -0
  72. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/dependency_links.txt +0 -0
  73. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/requires.txt +0 -0
  74. {rdworks-0.25.7 → rdworks-0.25.8}/src/rdworks.egg-info/top_level.txt +0 -0
  75. {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_basics.py +0 -0
  76. {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_nn_xtb.py +0 -0
  77. {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_states.py +0 -0
  78. {rdworks-0.25.7 → rdworks-0.25.8}/tests/test_web.py +0 -0
@@ -1,7 +1,7 @@
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  Metadata-Version: 2.4
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  Name: rdworks
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- Version: 0.25.7
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- Summary: Cheminformatics and AI/ML Work Built on RDKit
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+ Version: 0.25.8
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+ Summary: Routines built on RDKit
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  Author-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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  Maintainer-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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  License-Expression: MIT
@@ -10,7 +10,7 @@ Project-URL: Repository, https://github.com/sunghunbae/rdworks.git
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  Project-URL: Issues, https://github.com/sunghunbae/rdworks/issues
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  Project-URL: Changelog, https://github.com/sunghunbae/rdworks/blob/master/CHANGELOG.md
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  Project-URL: Documentation, https://sunghunbae.github.io/rdworks/
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- Keywords: neural-network-potential,cheminformatics,rdkit
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+ Keywords: cheminformatics,rdkit
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  Classifier: Development Status :: 3 - Alpha
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  Classifier: Intended Audience :: Developers
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  Classifier: Programming Language :: Python :: 3
@@ -23,11 +23,10 @@ dependencies = [
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  ]
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  authors = [{name = "Sung-Hun Bae", email="sunghun.bae@gmail.com"}, ]
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  maintainers = [{name = "Sung-Hun Bae", email="sunghun.bae@gmail.com"}, ]
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- description = "Cheminformatics and AI/ML Work Built on RDKit"
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+ description = "Routines built on RDKit"
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  readme = "README.md"
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  license = "MIT"
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  keywords = [
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- "neural-network-potential",
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  "cheminformatics",
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  "rdkit",
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  ]
@@ -52,7 +51,6 @@ version = {attr = "rdworks.__version__"}
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  where = ["src"]
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  [tool.setuptools.package-data]
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- "rdworks.auto3d.models" = [ "*" ]
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  "rdworks.predefined" = [ "*.xml" ]
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  "rdworks.predefined.Baell2010_PAINS" = [ "*.xml" ]
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  "rdworks.predefined.ChEMBL_Walters" = [ "*.xml" ]
@@ -1,4 +1,4 @@
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- __version__ = '0.25.7'
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+ __version__ = '0.25.8'
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  from rdworks.xml import list_predefined_xml, get_predefined_xml, parse_xml
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  from rdworks.units import ev2kcalpermol, hartree2ev, hartree2kcalpermol, periodictable
@@ -1,7 +1,6 @@
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  import io
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  import copy
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  import json
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- import types
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  import numpy as np
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  import ase
@@ -15,8 +14,9 @@ from rdkit.Chem.Draw import rdMolDraw2D
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  from typing import List, Optional, Union, Self
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- from .units import ev2kcalpermol
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- from .element import radii
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+ from rdworks.units import ev2kcalpermol
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+ from rdworks.units import radii
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+
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  class Conf:
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  """Container for 3D conformers.
@@ -1,12 +1,7 @@
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- # rdworks/mol.py
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-
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- import os
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  import io
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  import copy
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- import types
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  import pathlib
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  import itertools
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- import math
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  import json
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  import logging
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  import tempfile
@@ -34,6 +29,7 @@ from rdkit.Chem import (
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  Draw, rdDepictor,
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  rdDistGeom, rdMolAlign, rdMolTransforms, rdmolops
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  )
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+
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  from rdkit.Chem.Draw import rdMolDraw2D
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  from rdkit.ML.Cluster import Butina
@@ -49,6 +45,7 @@ from rdworks.autograph import NMRCLUST, DynamicTreeCut, RCKmeans, AutoGraph
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  from rdworks.bitqt import BitQT
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  from rdworks.conf import Conf
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+
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  main_logger = logging.getLogger()
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@@ -16,9 +16,7 @@ from rdkit.SimDivFilters.rdSimDivPickers import MaxMinPicker
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  from rdworks.conf import Conf
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  from rdworks.mol import Mol
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-
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  from rdworks.xml import list_predefined_xml
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- from rdworks.utils import precheck_path, guess_mol_id
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  class MolLibr:
@@ -1,7 +1,7 @@
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  Metadata-Version: 2.4
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  Name: rdworks
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- Version: 0.25.7
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- Summary: Cheminformatics and AI/ML Work Built on RDKit
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+ Version: 0.25.8
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+ Summary: Routines built on RDKit
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  Author-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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  Maintainer-email: Sung-Hun Bae <sunghun.bae@gmail.com>
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  License-Expression: MIT
@@ -10,7 +10,7 @@ Project-URL: Repository, https://github.com/sunghunbae/rdworks.git
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  Project-URL: Issues, https://github.com/sunghunbae/rdworks/issues
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  Project-URL: Changelog, https://github.com/sunghunbae/rdworks/blob/master/CHANGELOG.md
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  Project-URL: Documentation, https://sunghunbae.github.io/rdworks/
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- Keywords: neural-network-potential,cheminformatics,rdkit
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+ Keywords: cheminformatics,rdkit
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  Classifier: Development Status :: 3 - Alpha
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  Classifier: Intended Audience :: Developers
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  Classifier: Programming Language :: Python :: 3
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