rdrpcatch 0.0.1__tar.gz → 0.0.1.post1__tar.gz

{rdrpcatch-0.0.1 → rdrpcatch-0.0.1.post1}/.idea/workspace.xml

@@ -4,7 +4,9 @@
     <option name="autoReloadType" value="SELECTIVE" />
   </component>
   <component name="ChangeListManager">
-    <list default="true" id="d849e6fa-87f9-4e92-9c33-abef7cc975d3" name="Changes" comment="Updates:&#10;Update meta.yaml and .toml file&#10;Preparing for Pypi and Bioconda upload" />
+    <list default="true" id="d849e6fa-87f9-4e92-9c33-abef7cc975d3" name="Changes" comment="Updates:&#10;Update meta.yaml and .toml file&#10;Preparing for Pypi and Bioconda upload">
+      <change beforePath="$PROJECT_DIR$/meta.yaml" beforeDir="false" afterPath="$PROJECT_DIR$/meta.yaml" afterDir="false" />
+    </list>
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
     <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
@@ -20,7 +22,7 @@
   <component name="Git.Settings">
     <option name="RECENT_BRANCH_BY_REPOSITORY">
       <map>
-        <entry key="$PROJECT_DIR$" value="main" />
+        <entry key="$PROJECT_DIR$" value="development" />
       </map>
     </option>
     <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
@@ -114,7 +116,7 @@
       <workItem from="1742807277231" duration="2098000" />
       <workItem from="1743013480572" duration="6846000" />
       <workItem from="1743683517488" duration="7013000" />
-      <workItem from="1743714892367" duration="18229000" />
+      <workItem from="1743714892367" duration="21775000" />
     </task>
     <task id="LOCAL-00001" summary="First commit: Script for benchmark">
       <option name="closed" value="true" />

{rdrpcatch-0.0.1 → rdrpcatch-0.0.1.post1}/PKG-INFO

@@ -1,12 +1,12 @@
 Metadata-Version: 2.4
 Name: rdrpcatch
-Version: 0.0.1
+Version: 0.0.1.post1
 Dynamic: Summary
 Project-URL: Home, https://github.com/dimitris-karapliafis/RdRpCATCH
 Project-URL: Source, https://github.com/dimitris-karapliafis/RdRpCATCH
 Author-email: Dimitris Karapliafis <dimitris.karapliafis@wur.nl>, Uri Neri <uneri@lbl.gov>, RdRpCATCH contributors <dimitris.karapliafis@wur.nl>
 License: MIT
-License-File: LICENCE
+License-File: LICENSE
 Requires-Python: >=3.12
 Requires-Dist: altair==5.5.0
 Requires-Dist: matplotlib==3.10.1
@@ -58,11 +58,6 @@ Supported databases
 
 ## Installation
 
-### Installation instructions for testing phase
-
-RdRpCATCH will be available as a bioconda package soon. For the testing phase, we provide a tarball and a .yaml file to
-install the tool and its dependencies. The .tar.bz2 is created for Linux systems but should work on MacOS as well.
-(Windows is not supported)
 
 #### Prerequisites
 For the installation process, conda is required. If you don't have conda installed, you can find instructions on how to
@@ -72,10 +67,7 @@ Mamba is a faster alternative to conda. If you have it installed, you can use it
 #### Installation steps
 
 The package is available as a bioconda package. You can install it using the following command:
-```bash
-conda install -c bioconda rdrpcatch 
-```
-or 
+
 ```bash
 conda env create rdrpcatch -c bioconda rdrpcatch
 ```
@@ -220,4 +212,4 @@ Dimitris Karapliafis (dimitris.karapliafis@wur.nl), potentially via slack/teams
 TBD up to Dimitris and Anne
 
 ## Licence
-[MIT](LICENCE)
+[MIT](LICENSE)

{rdrpcatch-0.0.1 → rdrpcatch-0.0.1.post1}/README.md

@@ -36,11 +36,6 @@ Supported databases
 
 ## Installation
 
-### Installation instructions for testing phase
-
-RdRpCATCH will be available as a bioconda package soon. For the testing phase, we provide a tarball and a .yaml file to
-install the tool and its dependencies. The .tar.bz2 is created for Linux systems but should work on MacOS as well.
-(Windows is not supported)
 
 #### Prerequisites
 For the installation process, conda is required. If you don't have conda installed, you can find instructions on how to
@@ -50,10 +45,7 @@ Mamba is a faster alternative to conda. If you have it installed, you can use it
 #### Installation steps
 
 The package is available as a bioconda package. You can install it using the following command:
-```bash
-conda install -c bioconda rdrpcatch 
-```
-or 
+
 ```bash
 conda env create rdrpcatch -c bioconda rdrpcatch
 ```
@@ -198,4 +190,4 @@ Dimitris Karapliafis (dimitris.karapliafis@wur.nl), potentially via slack/teams
 TBD up to Dimitris and Anne
 
 ## Licence
-[MIT](LICENCE)
+[MIT](LICENSE)

{rdrpcatch-0.0.1 → rdrpcatch-0.0.1.post1}/meta.yaml

@@ -7,12 +7,17 @@ package:
 
 source:
   url: https://github.com/dimitris-karapliafis/RdRpCATCH/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: placeholder
+  sha256: 6454b1a6f98e461ca82d181b1595e5f06448786540b6daa2c4de31c38b255412
 
 build:
   number: 0
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv
+  run_exports:
+    - {{ pin_compatible('matplotlib-base', max_pin='x.x') }}
+    - {{ pin_compatible('pyhmmer', max_pin='x.x') }}
+    - {{ pin_compatible('polars', max_pin='x.x') }}
+    - {{ pin_compatible('altair', max_pin='x.x.x') }}
   entry_points:
     - rdrpcatch = rdrpcatch.cli.args:cli
 
@@ -23,16 +28,18 @@ requirements:
     - pip
   run:
     - python >=3.12
-    - mmseqs2==17.b804f
-    - seqkit==2.10.0
-    - pyhmmer==0.11.0
-    - needletail==0.6.3
-    - polars==1.26.0
-    - rich==13.9.4
-    - rich-click==1.8.8
-    - upsetplot==0.9.0
-    - matplotlib==3.10.1
-    - altair==5.5.0
+    - mmseqs2 ==17.b804f
+    - seqkit ==2.10.0
+    - pyhmmer ==0.11.0
+    - needletail ==0.6.3
+    - polars ==1.26.0
+    - rich ==13.9.4
+    - rich-click ==1.8.8
+    - upsetplot ==0.9.0
+    - matplotlib-base ==3.10.1
+    - altair ==5.5.0
+    - requests ==2.32.3
+
 
 test:
   commands:

{rdrpcatch-0.0.1 → rdrpcatch-0.0.1.post1}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "rdrpcatch"
-version = "0.0.1"
+version = "0.0.1.post1"
 authors = [
     {name = "Dimitris Karapliafis", email = "dimitris.karapliafis@wur.nl"},
     {name = "Uri Neri", email = "uneri@lbl.gov"},