rdetoolkit 1.1.0__tar.gz

rdetoolkit-1.1.0/.cargo/config.toml

@@ -0,0 +1,8 @@
+[build]
+rustflags = []
+
+[target.aarch64-apple-darwin]
+rustflags = ["-C", "link-arg=-undefined", "-C", "link-arg=dynamic_lookup"]
+
+[target.x86_64-apple-darwin]
+rustflags = ["-C", "link-arg=-undefined", "-C", "link-arg=dynamic_lookup"]

rdetoolkit-1.1.0/.github/CODEOWNERS

@@ -0,0 +1 @@
+* @sonoh5n

rdetoolkit-1.1.0/.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,14 @@
+## Related Issue
+<!--Please specify the related issue(s)-->
+
+## Changes
+<!--Describe the implementation details and changes made-->
+
+## Out of Scope
+<!--List any items that are not addressed or out of scope for this change-->
+
+## Verification
+<!--List the items to be verified in this pull request-->
+
+- [ ] CI tests pass successfully
+- [ ] No issues with the modified scripts

rdetoolkit-1.1.0/.github/release.yml

@@ -0,0 +1,14 @@
+changelog:
+  categories:
+    - title: Features
+      labels:
+        - enhancement
+    - title: Types Changes
+      labels:
+        - types
+    - title: Bug Fixes
+      labels:
+        - bug
+    - title: Other Changes
+      labels:
+        - '*'

rdetoolkit-1.1.0/.github/workflows/cache.yml

@@ -0,0 +1,28 @@
+name: cleanup all caches
+on:
+  workflow_dispatch:
+
+jobs:
+  cleanup:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Install GitHub CLI
+        uses: actions/setup-node@v3
+        with:
+          node-version: "14"
+      - name: Install GitHub CLI Cache Extension
+        run: gh extension install actions/gh-actions-cache
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      - name: Cleanup
+        run: |
+          set +e
+          echo "Deleting all caches..."
+          gh actions-cache list -R $REPO -L 100 | while IFS=$'\t' read -r cacheKey _
+          do
+            gh actions-cache delete "$cacheKey" -R $REPO --confirm
+          done
+          echo "Done"
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          REPO: ${{ github.repository }}

rdetoolkit-1.1.0/.github/workflows/core_module.yml

@@ -0,0 +1,41 @@
+name: Core Module
+
+on:
+  push:
+    branches:
+      - "*"
+      - "!docs*"
+      - "!doc*"
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Rust toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          components: clippy, rustfmt
+      - name: Run check
+        run: cargo check
+      - name: Run test
+        run: cargo test --no-default-features
+      - name: Run clippy
+        run: cargo clippy -- -D warnings
+
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout Crate
+        uses: actions/checkout@v4
+      - name: Set Toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+      - name: Run Test
+        run: cargo test --no-default-features

rdetoolkit-1.1.0/.github/workflows/coverage_badge.yml

@@ -0,0 +1,35 @@
+name: Pytest and coverage measurement and create badges
+
+on:
+  push:
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Setup python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+          cache: "pip"
+      - name: Install dependencies
+        run: |
+          pip install -r requirements-dev.lock
+          pip install coverage-badge
+      - name: Run pytest
+        run: python -m pytest --junitxml=pytest.xml --cov-report=term-missing --cov=src tests/
+      - name: Generate coverage badge
+        run: |
+          coverage-badge -o docs/img/coverage.svg -f
+      - name: Commit coverage badge
+        run: |
+          git config --global user.name "github-actions[bot]"
+          git config --global user.email "github-actions[bot]@users.noreply.github.com"
+          git add docs/img/coverage.svg
+          git add pytest.xml
+          git add Cargo.lock
+          git commit -m "chore: Update coverage badge" || echo "No changes to commit"
+          git push origin HEAD || echo "No changes to push"
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

rdetoolkit-1.1.0/.github/workflows/coverage_pr_reports.yml

@@ -0,0 +1,81 @@
+name: Coverage PR reports
+on:
+  pull_request:
+
+permissions: write-all
+
+jobs:
+  coverage_py:
+    name: Code Coverage with pytest
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+          cache: "pip"
+      - name: Install dependencies
+        run: pip install -r requirements-dev.lock
+      - name: run pytest
+        run: |
+          set -o pipefail
+          python -m pytest --junitxml=pytest.xml --cov-report=term-missing --cov=src tests/ | tee pytest-coverage.txt
+      - name: Pytest coverage comment
+        uses: MishaKav/pytest-coverage-comment@v1.1.47
+        with:
+          pytest-coverage-path: ./pytest-coverage.txt
+          junitxml-path: ./pytest.xml
+
+  coverage_rs:
+    name: Code Coverage with grcov
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Install Rust
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: nightly
+          override: true
+          components: llvm-tools-preview
+
+      - name: Install Python development files
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y python3-dev
+
+      - name: Install grcov
+        run: cargo install grcov
+
+      - name: Set up Python environment variables
+        run: |
+          echo "PYTHON_INCLUDE_DIR=$(python3 -c 'from sysconfig import get_paths as gp; print(gp()[\"include\"])')" >> $GITHUB_ENV
+          echo "PYTHON_LIB_DIR=$(python3 -c 'from sysconfig import get_paths as gp; print(gp()[\"stdlib\"])')" >> $GITHUB_ENV
+          echo "LD_LIBRARY_PATH=${{ env.PYTHON_LIB_DIR }}:$LD_LIBRARY_PATH" >> $GITHUB_ENV
+
+      - name: Build with coverage
+        env:
+          RUSTFLAGS: "-C instrument-coverage -L${{ env.PYTHON_LIB_DIR }} -I${{ env.PYTHON_INCLUDE_DIR }} -C link-arg=-Wl,-rpath,${{ env.PYTHON_LIB_DIR }}"
+        run: cargo build
+
+      - name: Run tests with coverage
+        env:
+          LLVM_PROFILE_FILE: "your-project-name.profraw"
+          CARGO_INCREMENTAL: 0
+        run: cargo test --no-default-features
+
+      - name: Generate coverage report
+        run: |
+          grcov . --binary-path ./target/debug/ -s . -t lcov --branch --ignore-not-existing --ignore "/*" -o lcov.info
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v3
+        with:
+          files: ./lcov.info
+
+      - name: Post coverage comment
+        uses: romeovs/lcov-reporter-action@v0.3.1
+        with:
+          lcov-file: lcov.info
+          github-token: ${{ secrets.GITHUB_TOKEN }}

rdetoolkit-1.1.0/.github/workflows/docs-ci-dry-run.yml

@@ -0,0 +1,63 @@
+name: Test Documentation Build and Deploy
+
+on:
+  push:
+    branches-ignore:
+      - master
+      - main
+  pull_request:
+    branches:
+      - "*"
+
+jobs:
+  test-deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Configure Git Credentials
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.10"
+
+      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV
+
+      - uses: actions/cache@v4
+        with:
+          key: mkdocs-material-${{ env.cache_id }}
+          path: .cache
+          restore-keys: |
+            mkdocs-material-
+
+      - name: Install dependencies and Deploy
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements-dev.lock
+
+      - name: Test documentation build
+        run: mkdocs build
+
+      - name: Test full deployment process
+        run: |
+          # Simulate tag deployment
+          mike delete latest || true
+          mike deploy test-version latest --allow-empty
+
+          # Simulate dev deployment
+          mike delete dev || true
+          mike deploy dev --allow-empty
+
+          # Check the current state
+          git status
+          git log --oneline -n 5
+
+      - name: Cleanup
+        run: |
+          git checkout ${{ github.head_ref }}
+          git branch -D gh-pages

rdetoolkit-1.1.0/.github/workflows/docs-ci.yml

@@ -0,0 +1,63 @@
+name: Build and Deploy Documentation with MkDocs
+on:
+  push:
+    branches:
+      - master
+      - main
+    tags:
+      - "v*.*.*"
+
+permissions:
+  contents: write
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Configure Git Credentials
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.10"
+
+      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV
+
+      - uses: actions/cache@v4
+        with:
+          key: mkdocs-material-${{ env.cache_id }}
+          path: .cache
+          restore-keys: |
+            mkdocs-material-
+
+      - name: Install dependencies and Deploy
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements-dev.lock
+
+      # - name: Fetch gh-pages branch
+      #   run: |
+      #     git fetch origin gh-pages:gh-pages
+
+      # - name: Deploy HTML files
+      #   run: mkdocs gh-deploy --force
+
+      - name: Deploy documentation
+        run: |
+          if [[ ${{ github.ref }} =~ ^refs/tags/ ]]; then
+              # push tag
+              VERSION=${GITHUB_REF#refs/tags/}
+              mike delete latest || true
+              mike deploy --push --update-aliases $VERSION latest
+              mike set-default --push latest
+          else
+              # push to main/master branch
+              mike delete dev || true
+              mike deploy --push --update-aliases dev
+          fi

rdetoolkit-1.1.0/.github/workflows/main.yml

@@ -0,0 +1,111 @@
+name: test
+
+on:
+  push:
+    branches:
+      - "*"
+      - "**"
+      - "!docs*"
+      - "!doc*"
+  pull_request:
+    branches:
+      - main
+      - develop*
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        tox-env: [module, ruff, lizard, mypy]
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Print
+        run: echo "Running tests for Python ${{ matrix.python-version }} with ${{ matrix.tox-env }}"
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install tox
+      - name: Test with tox
+        run: tox -e py${{ matrix.python-version }}-${{ matrix.tox-env }}
+
+  test_rs:
+    name: Test on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+        rust: [stable]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install Python development headers (Linux)
+        if: runner.os == 'Linux'
+        run: sudo apt-get install python3-dev
+
+      - name: Install Python development headers (macOS)
+        if: runner.os == 'macOS'
+        run: brew install python
+
+      - name: Install Rust
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: ${{ matrix.rust }}
+          override: true
+
+      - name: Set environment variables
+        run: |
+          echo "PYTHON_INCLUDE_DIR=$(python3 -c 'from distutils.sysconfig import get_python_inc(); print(get_python_inc())')" >> $GITHUB_ENV
+          echo "PYTHON_LIB_DIR=$(python3 -c 'import sysconfig; print(sysconfig.get_config_var("LIBDIR"))')" >> $GITHUB_ENV
+
+      - name: Run tests
+        run: cargo test --no-default-features
+
+  build-check:
+    needs: test
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install build setuptools
+      - name: Build
+        run: python -m build
+
+  coverage:
+    needs: test
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Setup up Python 3.11
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install tox
+      - name: Test with tox
+        run: tox -e py311-module
+      - name: Upload coverage report
+        uses: codecov/codecov-action@v4

rdetoolkit-1.1.0/.github/workflows/pr-agent.yaml

@@ -0,0 +1,27 @@
+name: PR-Agent
+
+on:
+  pull_request:
+    types: [opened, reopened, synchronize]
+  issue_comment:
+    types: [created, edited]
+  workflow_dispatch:
+
+permissions:
+  issues: write
+  pull-requests: write
+
+jobs:
+  pr_agent_job:
+    runs-on: ubuntu-latest
+    name: Run pr agent on every pull request
+    steps:
+      - name: PR Agent action step
+        id: pragent
+        uses: Codium-ai/pr-agent@main
+        env:
+          OPENAI_KEY: ${{ secrets.OPENAI_KEY }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_ACTION.AUTO_REVIEW: true
+          GITHUB_ACTION.AUTO_DESCRIBE: true
+          GITHUB_ACTION.AUTO_IMPROVE: true