rcsb.exdb 1.31__tar.gz → 1.32__tar.gz

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Files changed (96) hide show
  1. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/HISTORY.txt +1 -0
  2. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/PKG-INFO +1 -1
  3. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/pyproject.toml +2 -2
  4. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/.gitignore +0 -0
  5. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/LICENSE +0 -0
  6. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/README.md +0 -0
  7. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/__init__.py +0 -0
  8. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/__init__.py +0 -0
  9. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/branch/BranchedEntityExtractor.py +0 -0
  10. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/branch/GlycanProvider.py +0 -0
  11. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/branch/GlycanUtils.py +0 -0
  12. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/branch/__init__.py +0 -0
  13. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/chemref/ChemRefEtlWorker.py +0 -0
  14. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/chemref/ChemRefExtractor.py +0 -0
  15. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/chemref/ChemRefMappingProvider.py +0 -0
  16. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/chemref/PubChemDataCacheProvider.py +0 -0
  17. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/chemref/PubChemEtlWrapper.py +0 -0
  18. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/chemref/PubChemIndexCacheProvider.py +0 -0
  19. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/chemref/__init__.py +0 -0
  20. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/citation/CitationAdapter.py +0 -0
  21. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/citation/CitationExtractor.py +0 -0
  22. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/citation/CitationUtils.py +0 -0
  23. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/citation/__init__.py +0 -0
  24. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/cli/__init__.py +0 -0
  25. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/entry/EntryInfoProvider.py +0 -0
  26. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/entry/__init__.py +0 -0
  27. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/EntityInstanceExtractor.py +0 -0
  28. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/EntityPolymerExtractor.py +0 -0
  29. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/EntityPolymerExtractorFullTests.py +0 -0
  30. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/ReferenceSequenceAssignmentUpdater.py +0 -0
  31. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/ReferenceSequenceUtils.py +0 -0
  32. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/ReferenceSequenceUtilsTests.py +0 -0
  33. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/exampleObjectExtractor.py +0 -0
  34. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/fixtureEntityPolymerExtractor.py +0 -0
  35. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/testEntityInstanceExtractor.py +0 -0
  36. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/testEntityPolymerExtractor.py +0 -0
  37. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/testReferenceSequenceAssignmentUpdater.py +0 -0
  38. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/examples-seq/testReferenceSequenceUtils.py +0 -0
  39. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/AnnotationExtractor.py +0 -0
  40. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/LigandNeighborMappingExtractor.py +0 -0
  41. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/LigandNeighborMappingProvider.py +0 -0
  42. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/PolymerEntityExtractor.py +0 -0
  43. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/ReferenceSequenceAnnotationAdapter.py +0 -0
  44. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/ReferenceSequenceAnnotationProvider.py +0 -0
  45. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/ReferenceSequenceAssignmentAdapter.py +0 -0
  46. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/ReferenceSequenceAssignmentProvider.py +0 -0
  47. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/ReferenceSequenceCacheProvider.py +0 -0
  48. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/TaxonomyExtractor.py +0 -0
  49. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/UniProtCoreEtlWorker.py +0 -0
  50. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/UniProtExtractor.py +0 -0
  51. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/seq/__init__.py +0 -0
  52. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/__init__.py +0 -0
  53. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/fixtureDictMethodResourceProvider.py +0 -0
  54. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/fixturePdbxLoader.py +0 -0
  55. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testAnnotationExtractor.py +0 -0
  56. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testBranchedEntityExtractor.py +0 -0
  57. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testChemRefLoader.py +0 -0
  58. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testChemRefMappingProvider.py +0 -0
  59. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testCitationAdapter.py +0 -0
  60. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testCitationExtractor.py +0 -0
  61. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testCitationUtils.py +0 -0
  62. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testEntryInfoEtlWorkflow.py +0 -0
  63. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testEntryInfoProvider.py +0 -0
  64. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testGlycanEtlWorkflow.py +0 -0
  65. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testGlycanProvider.py +0 -0
  66. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testGlycanUtils.py +0 -0
  67. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testLigandNeighborMappingProvider.py +0 -0
  68. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testObjectExtractor.py +0 -0
  69. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testObjectTransformer.py +0 -0
  70. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testObjectUpdater.py +0 -0
  71. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testPolymerEntityExtractor.py +0 -0
  72. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testPubChemDataCacheProvider.py +0 -0
  73. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testPubChemEtlWorkflow.py +0 -0
  74. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testPubChemEtlWrapper.py +0 -0
  75. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testPubChemIndexCacheProvider.py +0 -0
  76. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testReferenceSequenceAnnotationAdapter.py +0 -0
  77. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testReferenceSequenceAssignmentAdapter.py +0 -0
  78. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testReferenceSequenceAssignmentAdapterValidate.py +0 -0
  79. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testReferenceSequenceAssignmentProvider.py +0 -0
  80. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testReferenceSequenceCacheProvider.py +0 -0
  81. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testTaxonomyExtractor.py +0 -0
  82. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testTreeNodeListWorker.py +0 -0
  83. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testUniProtCoreEtlWorker.py +0 -0
  84. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tests/testUniProtExtractor.py +0 -0
  85. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tree/TreeNodeListWorker.py +0 -0
  86. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/tree/__init__.py +0 -0
  87. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/utils/ObjectAdapterBase.py +0 -0
  88. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/utils/ObjectExtractor.py +0 -0
  89. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/utils/ObjectTransformer.py +0 -0
  90. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/utils/ObjectUpdater.py +0 -0
  91. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/utils/ObjectValidator.py +0 -0
  92. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/utils/__init__.py +0 -0
  93. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/wf/EntryInfoEtlWorkflow.py +0 -0
  94. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/wf/GlycanEtlWorkflow.py +0 -0
  95. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/wf/PubChemEtlWorkflow.py +0 -0
  96. {rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/wf/__init__.py +0 -0
{rcsb_exdb-1.31 → rcsb_exdb-1.32}/HISTORY.txt RENAMED
@@ -113,3 +113,4 @@
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  8-Apr-2025 V1.29 Add more logging to PubChemIndexCacheProvider and increase default numProc
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  2-Oct-2025 V1.30 Make use of ExDB configuration file for loading drugbank and tree node list DBs/collections and setting indexed fields
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  2-Dec-2025 V1.31 Switch to 'pyproject.toml' file and update test pipelines to python 3.12
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+ 8-Dec-2025 V1.32 Correction to pyproject.toml
{rcsb_exdb-1.31 → rcsb_exdb-1.32}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: rcsb.exdb
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- Version: 1.31
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+ Version: 1.32
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  Summary: RCSB Python ExDB data extraction and loading workflows
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  Project-URL: Homepage, https://github.com/rcsb/py-rcsb_exdb
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  Author-email: John Westbrook <john.westbrook@rcsb.org>
{rcsb_exdb-1.31 → rcsb_exdb-1.32}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "rcsb.exdb"
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  description = "RCSB Python ExDB data extraction and loading workflows"
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- version = "1.31"
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+ version = "1.32"
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  readme = "README.md"
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  authors = [
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  { name="John Westbrook", email="john.westbrook@rcsb.org" }
@@ -71,7 +71,7 @@ exclude = [
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  [tool.hatch.build.targets.wheel]
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  packages = ["rcsb"]
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  exclude = [
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- "/rcsb/db/test*",
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+ "/rcsb/exdb/test*",
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  "/rcsb/mock-*",
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  ]
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{rcsb_exdb-1.31 → rcsb_exdb-1.32}/.gitignore RENAMED
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{rcsb_exdb-1.31 → rcsb_exdb-1.32}/LICENSE RENAMED
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{rcsb_exdb-1.31 → rcsb_exdb-1.32}/README.md RENAMED
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{rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/__init__.py RENAMED
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{rcsb_exdb-1.31 → rcsb_exdb-1.32}/rcsb/exdb/__init__.py RENAMED
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