rcsb-embedding-model 0.0.12__tar.gz → 0.0.14__tar.gz

rcsb_embedding_model-0.0.14/.github/workflows/publish.yaml

@@ -0,0 +1,84 @@
+name: CI Pipeline
+
+on:
+  push:
+    branches: [master]
+    tags:
+      - 'v*'
+  pull_request:
+    branches: [master]
+
+jobs:
+  test:
+    name: Test on Python ${{ matrix.python-version }}
+    runs-on:
+      - "self-hosted"
+    timeout-minutes: 20
+    strategy:
+      matrix:
+        python-version: ["3.10"]
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install Hatch
+        run: pip install hatch huggingface_hub[cli]
+
+      - name: Authenticate to Hugging Face
+        run: huggingface-cli login --token ${{ secrets.HF_API_TOKEN }}
+
+      - name: Run tests
+        run: hatch test
+
+  build:
+    name: Build to PyPI
+    needs: test
+    runs-on: ubuntu-latest
+    # if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+
+      - name: Install Hatch
+        run: pip install hatch
+
+      - name: Build distribution
+        run: hatch build
+
+      - name: Store the distribution packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: python-package-distributions
+          path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish Python 🐍 distribution 📦 to PyPI
+    # if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+      - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/rcsb-embedding-model  # Replace <package-name> with your PyPI project name
+    permissions:
+      id-token: write
+
+    steps:
+      - name: Download all the dists
+        uses: actions/download-artifact@v4
+        with:
+          name: python-package-distributions
+          path: dist/
+      - name: Publish distribution 📦 to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

{rcsb_embedding_model-0.0.12 → rcsb_embedding_model-0.0.14}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rcsb-embedding-model
-Version: 0.0.12
+Version: 0.0.14
 Summary: Protein Embedding Model for Structure Search
 Project-URL: Homepage, https://github.com/rcsb/rcsb-embedding-model
 Project-URL: Issues, https://github.com/rcsb/rcsb-embedding-model/issues
@@ -18,7 +18,7 @@ Description-Content-Type: text/markdown
 
 # RCSB Embedding Model
 
-**Version** 0.0.12
+**Version** 0.0.14
 
 
 ## Overview

{rcsb_embedding_model-0.0.12 → rcsb_embedding_model-0.0.14}/README.md

@@ -1,6 +1,6 @@
 # RCSB Embedding Model
 
-**Version** 0.0.12
+**Version** 0.0.14
 
 
 ## Overview

{rcsb_embedding_model-0.0.12 → rcsb_embedding_model-0.0.14}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "rcsb-embedding-model"
-version = "0.0.12"
+version = "0.0.14"
 authors = [
     { name="Joan Segura", email="joan.segura@rcsb.org" },
 ]

{rcsb_embedding_model-0.0.12 → rcsb_embedding_model-0.0.14}/src/rcsb_embedding_model/dataset/resdiue_assembly_embedding_from_structure.py

@@ -37,7 +37,7 @@ class ResidueAssemblyDatasetFromStructure(ResidueAssemblyEmbeddingFromTensorFile
         super().__init__(
             src_stream=self.__get_assemblies(src_stream),
             res_embedding_location=res_embedding_location,
-            src_location=src_location,
+            src_location=SrcLocation.stream,
             structure_location=structure_location,
             structure_format=structure_format,
             min_res_n=min_res_n,