rapidtide 3.0.3__tar.gz → 3.0.5__tar.gz

{rapidtide-3.0.3 → rapidtide-3.0.5}/CHANGELOG.md

@@ -1,5 +1,14 @@
 # Release history
 
+## Version 3.0.5 (5/7/25)
+* (rapidtide) Loosened the sample rate matching when appending timecourses to files, and read NIFTI tr values using modern header features.  This should help address https://github.com/bbfrederick/rapidtide/issues/205 (thank you to https://github.com/phildeming for finding this).
+
+## Version 3.0.4 (5/5/25)
+* (rapidtide, retrotregress, tidepool) Support for maxcorrrefined map.
+* (retroregress) Gracefully handles missing mask names in runoptions file.
+* (package) Version works again!  Thank you Chris (https://github.com/effigies)!
+* (package) Added a few more tests to catch edge cases that showed up in testing fmripost-rapidtide.
+
 ## Version 3.0.3 (5/4/25)
 * (rapidtide, retroregress) If you supply a brain, GM, WM, or CSF mask, rapidtide extracts the matching timecourse from the mask at startup, and after filtering, if it's done.  retroregress extracts the timecourses after filtering.
 * (rapidtide) Fixed mask logic when gray matter mask is provided.

{rapidtide-3.0.3/rapidtide.egg-info → rapidtide-3.0.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rapidtide
-Version: 3.0.3
+Version: 3.0.5
 Summary: Tools for performing correlation analysis on fMRI data.
 Author: Taylor Salo, Daniel M. Drucker, Ph.D., Jeffrey N Stout, Yaroslav O. Halchenko, Derek Monroe
 Author-email: "Blaise deB. Frederick" <blaise.frederick@gmail.com>

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/RapidtideDataset.py

@@ -276,6 +276,7 @@ class Overlay:
             label=newlabel,
             report=self.report,
             init_LUT=init_LUT,
+            verbose=self.verbose,
         )
 
     def updateStats(self):
@@ -1145,6 +1146,7 @@ class RapidtideDataset:
                 ["lagtimesrefined", "desc-maxtimerefined_map"],
                 ["timepercentile", "desc-timepercentile_map"],
                 ["lagstrengths", "desc-maxcorr_map"],
+                ["lagstrengthsrefined", "desc-maxcorrrefined_map"],
                 ["lagsigma", "desc-maxwidth_map"],
                 ["MTT", "desc-MTT_map"],
                 ["R2", "desc-lfofilterR2_map"],

rapidtide-3.0.5/rapidtide/_version.py

@@ -0,0 +1,21 @@
+
+# This file was generated by 'versioneer.py' (0.29) from
+# revision-control system data, or from the parent directory name of an
+# unpacked source archive. Distribution tarballs contain a pre-generated copy
+# of this file.
+
+import json
+
+version_json = '''
+{
+ "date": "2025-05-07T20:47:14-0400",
+ "dirty": false,
+ "error": null,
+ "full-revisionid": "ea9d8f413eaa094534d2da7318765380528980fe",
+ "version": "3.0.5"
+}
+'''  # END VERSION_JSON
+
+
+def get_versions():
+    return json.loads(version_json)

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/io.py

@@ -1426,6 +1426,8 @@ def writebidstsv(
     yaxislabel="arbitrary value",
     starttime=0.0,
     append=False,
+    samplerate_tolerance=1e-6,
+    starttime_tolerance=1e-6,
     colsinjson=True,
     colsintsv=False,
     omitjson=False,
@@ -1498,8 +1500,8 @@ def writebidstsv(
                 )
             compressed = incompressed
             if (
-                (insamplerate == samplerate)
-                and (instarttime == starttime)
+                np.fabs(insamplerate - samplerate) < samplerate_tolerance
+                and np.fabs(instarttime - starttime) < starttime_tolerance
                 and reshapeddata.shape[1] == indata.shape[1]
             ):
                 startcol = len(incolumns)
@@ -1938,7 +1940,12 @@ def parsefilespec(filespec, debug=False):
     if debug:
         print(f"PARSEFILESPEC: input string >>>{filespec}<<<")
         print(f"PARSEFILESPEC: platform is {platform.system()}")
-    if filespec[1] == ":" and platform.system() == "Windows":
+
+    specialcase = False
+    if len(inputlist) > 1:
+        if filespec[1] == ":" and platform.system() == "Windows":
+            specialcase = True
+    if specialcase:
         thefilename = ":".join([inputlist[0], inputlist[1]])
         if len(inputlist) == 3:
             thecolspec = inputlist[2]

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/tests/test_fullrunrapidtide_v1.py

@@ -23,7 +23,6 @@ import matplotlib as mpl
 import rapidtide.qualitycheck as rapidtide_quality
 import rapidtide.workflows.rapidtide as rapidtide_workflow
 import rapidtide.workflows.rapidtide_parser as rapidtide_parser
-import rapidtide.workflows.retroregress as rapidtide_retroregress
 from rapidtide.tests.utils import get_examples_path, get_test_temp_path
 
 
@@ -57,7 +56,6 @@ def test_fullrunrapidtide_v1(debug=False, local=False, displayplots=False):
     rapidtide_workflow.rapidtide_main(rapidtide_parser.process_args(inputargs=inputargs))
     rapidtide_quality.qualitycheck(os.path.join(testtemproot, "sub-RAPIDTIDETEST1"))
 
-
     # test fixval
     inputargs = [
         os.path.join(exampleroot, "sub-RAPIDTIDETEST.nii.gz"),

rapidtide-3.0.5/rapidtide/tests/test_getparsers.py

@@ -0,0 +1,140 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import numpy as np
+
+from rapidtide.workflows.adjustoffset import _get_parser as adjustoffset_getparser
+from rapidtide.workflows.aligntcs import _get_parser as aligntcs_getparser
+from rapidtide.workflows.applydlfilter import _get_parser as applydlfilter_getparser
+from rapidtide.workflows.atlasaverage import _get_parser as atlasaverage_getparser
+from rapidtide.workflows.atlastool import _get_parser as atlastool_getparser
+from rapidtide.workflows.calctexticc import _get_parser as calctexticc_getparser
+from rapidtide.workflows.ccorrica import _get_parser as ccorrica_getparser
+from rapidtide.workflows.delayvar import _get_parser as delayvar_getparser
+from rapidtide.workflows.diffrois import _get_parser as diffrois_getparser
+from rapidtide.workflows.endtidalproc import _get_parser as endtidalproc_getparser
+from rapidtide.workflows.fdica import _get_parser as fdica_getparser
+from rapidtide.workflows.filtnifti import _get_parser as filtnifti_getparser
+from rapidtide.workflows.filttc import _get_parser as filttc_getparser
+from rapidtide.workflows.fixtr import _get_parser as fixtr_getparser
+from rapidtide.workflows.gmscalc import _get_parser as gmscalc_getparser
+from rapidtide.workflows.happy_parser import _get_parser as happy_parser_getparser
+from rapidtide.workflows.happy2std import _get_parser as happy2std_getparser
+from rapidtide.workflows.histnifti import _get_parser as histnifti_getparser
+from rapidtide.workflows.histtc import _get_parser as histtc_getparser
+from rapidtide.workflows.linfitfilt import _get_parser as linfitfilt_getparser
+from rapidtide.workflows.localflow import _get_parser as localflow_getparser
+from rapidtide.workflows.mergequality import _get_parser as mergequality_getparser
+from rapidtide.workflows.niftidecomp import _get_parser_temporal as niftidecomp_getparser_temporal
+from rapidtide.workflows.niftidecomp import _get_parser_spatial as niftidecomp_getparser_spatial
+from rapidtide.workflows.niftistats import _get_parser as niftistats_getparser
+from rapidtide.workflows.pairproc import _get_parser as pairproc_getparser
+from rapidtide.workflows.pairwisemergenifti import _get_parser as pairwisemergenifti_getparser
+from rapidtide.workflows.physiofreq import _get_parser as physiofreq_getparser
+from rapidtide.workflows.pixelcomp import _get_parser as pixelcomp_getparser
+from rapidtide.workflows.plethquality import _get_parser as plethquality_getparser
+from rapidtide.workflows.polyfitim import _get_parser as polyfitim_getparser
+from rapidtide.workflows.proj2flow import _get_parser as proj2flow_getparser
+from rapidtide.workflows.rankimage import _get_parser as rankimage_getparser
+from rapidtide.workflows.rapidtide2std import _get_parser as rapidtide2std_getparser
+from rapidtide.workflows.resamplenifti import _get_parser as resamplenifti_getparser
+from rapidtide.workflows.resampletc import _get_parser as resampletc_getparser
+from rapidtide.workflows.retrolagtcs import _get_parser as retrolagtcs_getparser
+from rapidtide.workflows.retroregress import _get_parser as retroregress_getparser
+from rapidtide.workflows.roisummarize import _get_parser as roisummarize_getparser
+from rapidtide.workflows.runqualitycheck import _get_parser as runqualitycheck_getparser
+from rapidtide.workflows.showarbcorr import _get_parser as showarbcorr_getparser
+from rapidtide.workflows.showhist import _get_parser as showhist_getparser
+from rapidtide.workflows.showstxcorr import _get_parser as showstxcorr_getparser
+from rapidtide.workflows.showtc import _get_parser as showtc_getparser
+from rapidtide.workflows.showxcorrx import _get_parser as showxcorrx_getparser
+from rapidtide.workflows.showxy import _get_parser as showxy_getparser
+from rapidtide.workflows.simdata import _get_parser as simdata_getparser
+from rapidtide.workflows.spatialfit import _get_parser as spatialfit_getparser
+from rapidtide.workflows.spatialmi import _get_parser as spatialmi_getparser
+from rapidtide.workflows.spectrogram import _get_parser as spectrogram_getparser
+from rapidtide.workflows.synthASL import _get_parser as synthASL_getparser
+from rapidtide.workflows.tcfrom2col import _get_parser as tcfrom2col_getparser
+from rapidtide.workflows.tcfrom3col import _get_parser as tcfrom3col_getparser
+from rapidtide.workflows.variabilityizer import _get_parser as variabilityizer_getparser
+
+
+def test_parsers(debug=False):
+    parserlist = [ adjustoffset_getparser,
+        aligntcs_getparser,
+        applydlfilter_getparser,
+        atlasaverage_getparser,
+        atlastool_getparser,
+        calctexticc_getparser,
+        ccorrica_getparser,
+        delayvar_getparser,
+        diffrois_getparser,
+        endtidalproc_getparser,
+        fdica_getparser,
+        filtnifti_getparser,
+        filttc_getparser,
+        fixtr_getparser,
+        gmscalc_getparser,
+        happy_parser_getparser,
+        happy2std_getparser,
+        histnifti_getparser,
+        histtc_getparser,
+        linfitfilt_getparser,
+        localflow_getparser,
+        mergequality_getparser,
+        niftidecomp_getparser_temporal,
+        niftidecomp_getparser_spatial,
+        niftistats_getparser,
+        pairproc_getparser,
+        pairwisemergenifti_getparser,
+        physiofreq_getparser,
+        pixelcomp_getparser,
+        plethquality_getparser,
+        polyfitim_getparser,
+        proj2flow_getparser,
+        rankimage_getparser,
+        rapidtide2std_getparser,
+        resamplenifti_getparser,
+        resampletc_getparser,
+        retrolagtcs_getparser,
+        retroregress_getparser,
+        roisummarize_getparser,
+        runqualitycheck_getparser,
+        showarbcorr_getparser,
+        showhist_getparser,
+        showstxcorr_getparser,
+        showtc_getparser,
+        showxcorrx_getparser,
+        showxy_getparser,
+        simdata_getparser,
+        spatialfit_getparser,
+        spatialmi_getparser,
+        spectrogram_getparser,
+        synthASL_getparser,
+        tcfrom2col_getparser,
+        tcfrom3col_getparser,
+        variabilityizer_getparser ]
+
+    for thegetparser in parserlist:
+        theusage = thegetparser().format_help()
+        if debug:
+            print(theusage)
+
+
+if __name__ == "__main__":
+    test_parsers(debug=True)

rapidtide-3.0.5/rapidtide/tests/test_parserfuncs.py

@@ -0,0 +1,70 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+#
+#   Copyright 2016-2025 Blaise Frederick
+#
+#   Licensed under the Apache License, Version 2.0 (the "License");
+#   you may not use this file except in compliance with the License.
+#   You may obtain a copy of the License at
+#
+#       http://www.apache.org/licenses/LICENSE-2.0
+#
+#   Unless required by applicable law or agreed to in writing, software
+#   distributed under the License is distributed on an "AS IS" BASIS,
+#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#   See the License for the specific language governing permissions and
+#   limitations under the License.
+#
+#
+import os
+import argparse
+import rapidtide.workflows.parser_funcs as pf
+from rapidtide.tests.utils import get_examples_path, get_test_temp_path
+
+def _get_parser():
+    """
+    Argument parser for adjust offset
+    """
+    parser = argparse.ArgumentParser(
+        prog="dummy",
+        description="dummy",
+        allow_abbrev=False,
+    )
+
+    # Required arguments
+    parser.add_argument(
+        "inputmap",
+        type=lambda x: pf.is_valid_file(parser, x),
+        help="The name of the rapidtide maxtime map.",
+    )
+
+    return parser
+
+
+def test_parserfuncs(debug=False, local=False, displayplots=False):
+    # set input and output directories
+    if local:
+        exampleroot = "../data/examples/src"
+        testtemproot = "./tmp"
+    else:
+        exampleroot = get_examples_path()
+        testtemproot = get_test_temp_path()
+
+
+    theparser = _get_parser()
+
+    filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseries.json")
+    retval = pf.is_valid_file(theparser, filename)
+    print(filename, retval)
+
+    #filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseriesxyz.json")
+    #retval = pf.is_valid_file(theparser, filename)
+    #print(filename, retval)
+
+    filename = os.path.join(exampleroot,"sub-RAPIDTIDETEST_desc-oversampledmovingregressor_timeseries.json:acolname")
+    retval = pf.is_valid_file(theparser, filename)
+    print(filename, retval)
+
+
+if __name__ == "__main__":
+    test_parserfuncs(debug=True, local=True, displayplots=True)

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/tests/test_zRapidtideDataset.py

@@ -59,7 +59,9 @@ def main(runninglocally=False):
         verbose=verbose,
     )
 
+    print("getting overlays")
     theoverlays = thesubject.getoverlays()
+    print("getting regressors")
     theregressors = thesubject.getregressors()
 
     assert thesubject.focusregressor == "prefilt"

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/workflows/rapidtide.py

@@ -3463,7 +3463,7 @@ def rapidtide_main(argparsingfunc):
             cifti_hdr=theinputdata.cifti_hdr,
         )
 
-        if optiondict["refinedelay"] and False:
+        if optiondict["refinedelay"]:
             # filter the fmri data to the lfo band
             print("filtering fmri_data to sLFO band")
             for i in range(fmri_data_valid.shape[0]):
@@ -3504,7 +3504,13 @@ def rapidtide_main(argparsingfunc):
             )
 
             maplist = [
-                (rvalue, "maxcorralt", "map", None, "R value of the inband sLFO fit, with sign"),
+                (
+                    rvalue,
+                    "maxcorrrefined",
+                    "map",
+                    None,
+                    "R value of the inband sLFO fit, with sign",
+                ),
             ]
 
             tide_io.savemaplist(

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/workflows/rapidtide2std.py

@@ -187,8 +187,10 @@ def rapidtide2std(args):
 
     thefmrimaps = [
         "desc-maxtime_map",
+        "desc-maxtimerefined_map",
         "desc-timepercentile_map",
         "desc-maxcorr_map",
+        "desc-maxcorrrefined_map",
         "desc-maxwidth_map",
         "desc-MTT_map",
         "desc-corrfit_mask",

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/workflows/rapidtide_parser.py

@@ -1916,7 +1916,7 @@ def process_args(inputargs=None):
 
     if args["in_file"].endswith("txt") and args["realtr"] == "auto":
         raise ValueError(
-            "Either --datatstep or --datafreq must be provided " "if data file is a text file."
+            "Either --datatstep or --datafreq must be provided if data file is a text file."
         )
 
     if args["realtr"] != "auto":
@@ -1925,7 +1925,7 @@ def process_args(inputargs=None):
         if tide_io.checkifcifti(args["in_file"]):
             fmri_tr, dummy = tide_io.getciftitr(nib.load(args["in_file"]).header)
         else:
-            fmri_tr = nib.load(args["in_file"]).header.get_zooms()[3]
+            fmri_tr, dummy = tide_io.fmritimeinfo(args["in_file"])
     args["realtr"] = fmri_tr
 
     if args["inputfreq"] == "auto":

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/workflows/retroregress.py

@@ -20,6 +20,7 @@ import argparse
 import copy
 import logging
 import os
+import platform
 import sys
 import time
 from pathlib import Path
@@ -163,13 +164,13 @@ def _get_parser():
         default=True,
     )
     parser.add_argument(
-        "--refinecorr",
+        "--norefinecorr",
         dest="refinecorr",
-        action="store_true",
+        action="store_false",
         help=(
-            "Recalculate the maxcorr map using GLM coefficient of determination from bandpassed data."
+            "Don't recalculate the maxcorr map using GLM coefficient of determination from bandpassed data."
         ),
-        default=False,
+        default=True,
     )
     parser.add_argument(
         "--nofilterwithrefineddelay",
@@ -819,6 +820,10 @@ def retroregress(args):
         ]
         anatomicmasks = []
         for thisanatomic in anatomiclist:
+            try:
+                thename = therunoptions[thisanatomic[0]]
+            except KeyError:
+                therunoptions[thisanatomic[0]] = None
             if therunoptions[thisanatomic[0]] is not None:
                 anatomicmasks.append(
                     tide_mask.readamask(
@@ -1237,13 +1242,13 @@ def retroregress(args):
         TimingLGR.info("Finishing output save")
 
         if args.refinecorr:
-            TimingLGR.info("Filtering for maxcorralt calculation start")
+            TimingLGR.info("Filtering for maxcorrrefined calculation start")
             for thevoxel in range(fmri_data_valid.shape[0]):
                 fmri_data_valid[thevoxel, :] = theprefilter.apply(
                     1.0 / fmritr, fmri_data_valid[thevoxel, :]
                 )
-            TimingLGR.info("Filtering for maxcorralt calculation complete")
-            TimingLGR.info("GLM for maxcorralt calculation start")
+            TimingLGR.info("Filtering for maxcorrrefined calculation complete")
+            TimingLGR.info("GLM for maxcorrrefined calculation start")
             voxelsprocessed_regressionfilt, regressorset, evset = (
                 tide_regressfrommaps.regressfrommaps(
                     fmri_data_valid,
@@ -1275,7 +1280,7 @@ def retroregress(args):
                 )
             )
             TimingLGR.info(
-                "GLM for maxcorralt calculation done",
+                "GLM for maxcorrrefined calculation done",
                 {
                     "message2": voxelsprocessed_regressionfilt,
                     "message3": "voxels",
@@ -1285,7 +1290,7 @@ def retroregress(args):
             maplist = [
                 (
                     rvalue,
-                    "maxcorralt",
+                    "maxcorrrefined",
                     "map",
                     None,
                     "R value for the lfo component of the delayed regressor, with sign",
@@ -1385,6 +1390,14 @@ def retroregress(args):
     therunoptions["retroregress_runtime"] = time.strftime(
         "%a, %d %b %Y %H:%M:%S %Z", time.localtime(time.time())
     )
+    (
+        therunoptions["retroregress_release_version"],
+        therunoptions["retroregress_git_sha"],
+        therunoptions["retroregress_git_date"],
+        therunoptions["retroregress_git_isdirty"],
+    ) = tide_util.version()
+    therunoptions["retroregress_python_version"] = str(sys.version_info)
+    therunoptions["retroregress_nodename"] = platform.node()
 
     # clean up shared memory
     if usesharedmem:

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/workflows/simdata.py

@@ -53,46 +53,44 @@ def _get_parser():
 
     for band in ["lfo", "resp", "cardiac"]:
         parser.add_argument(
-            "--" + band + "pctfile",
-            dest=(band + "pctfile"),
+            f"--{band}pctfile",
+            dest=(f"{band}pctfile"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=(
-                "3D NIFTI file with the " + band + " amplitude in percent of mean at every point"
-            ),
+            help=(f"3D NIFTI file with the {band} amplitude in percent of mean at every point"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "lagfile",
-            dest=(band + "lagfile"),
+            f"--{band}lagfile",
+            dest=(f"{band}lagfile"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=("3D NIFTI file with the " + band + " delay value in seconds at every point"),
+            help=(f"3D NIFTI file with the {band} delay value in seconds at every point"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "regressor",
-            dest=(band + "regressor"),
+            f"--{band}regressor",
+            dest=(f"{band}regressor"),
             action="store",
             type=lambda x: pf.is_valid_file(parser, x),
             metavar="FILE",
-            help=("The LFO regressor text file"),
+            help=(f"The {band} regressor text file"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "samprate",
-            dest=(band + "samprate"),
+            f"--{band}samprate",
+            dest=(f"{band}samprate"),
             action="store",
             type=float,
             metavar="SAMPRATE",
-            help=("The sample rate of the LFO regressor file, in Hz"),
+            help=(f"The sample rate of the {band} regressor file, in Hz"),
             default=None,
         )
         parser.add_argument(
-            "--" + band + "starttime",
-            dest=(band + "starttime"),
+            f"--{band}starttime",
+            dest=(f"{band}starttime"),
             action="store",
             type=float,
             metavar="STARTTIME",
@@ -317,7 +315,7 @@ def simdata(args):
         sliceoffsettimes *= fmritr
 
     nim_fmri, fmridata, fmriheader, fmridims, fmrisizes = tide_io.readfromnifti(args.fmrifilename)
-    print("fmri data: ", numtrs, " timepoints, tr = ", fmritr)
+    print(f"fmri data: {numtrs} timepoints, tr = {fmritr}")
 
     # prepare the output timepoints
     initial_fmri_x = (
@@ -328,12 +326,8 @@ def simdata(args):
     )
     print("length of fmri after removing skip:", len(initial_fmri_x))
     print(
-        "fmri time has length",
-        len(initial_fmri_x),
-        "and runs runs from ",
-        initial_fmri_x[0],
-        " to ",
-        initial_fmri_x[-1],
+        f"fmri time has length {len(initial_fmri_x)}",
+        f"and runs runs from {initial_fmri_x[0]} to {initial_fmri_x[-1]}",
     )
 
     # read in the immean file

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide/workflows/tidepool.py

@@ -1982,6 +1982,12 @@ def tidepool(args):
             "display": True,
             "funcmask": "p_lt_0p050_mask",
         },
+        "lagstrengthsrefined": {
+            "colormap": gen_thermal_state(),
+            "label": "Refined similarity coefficient",
+            "display": True,
+            "funcmask": "p_lt_0p050_mask",
+        },
         "lagsigma": {
             "colormap": gen_plasma_state(),
             "label": "Similarity width",

{rapidtide-3.0.3 → rapidtide-3.0.5/rapidtide.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: rapidtide
-Version: 3.0.3
+Version: 3.0.5
 Summary: Tools for performing correlation analysis on fMRI data.
 Author: Taylor Salo, Daniel M. Drucker, Ph.D., Jeffrey N Stout, Yaroslav O. Halchenko, Derek Monroe
 Author-email: "Blaise deB. Frederick" <blaise.frederick@gmail.com>

{rapidtide-3.0.3 → rapidtide-3.0.5}/rapidtide.egg-info/SOURCES.txt

@@ -8,6 +8,7 @@ README.rst
 TODO.md
 USAGE.rst
 pyproject.toml
+setup.py
 versioneer.py
 cloud/download-nda-data
 cloud/downloadcmd-auther
@@ -259,6 +260,7 @@ rapidtide/tests/test_fullrunrapidtide_v4.py
 rapidtide/tests/test_fullrunrapidtide_v5.py
 rapidtide/tests/test_fullrunrapidtide_v6.py
 rapidtide/tests/test_fullrunrapidtide_v7.py
+rapidtide/tests/test_getparsers.py
 rapidtide/tests/test_io.py
 rapidtide/tests/test_linfitfiltpass.py
 rapidtide/tests/test_mi.py
@@ -266,6 +268,7 @@ rapidtide/tests/test_miscmath.py
 rapidtide/tests/test_motionregress.py
 rapidtide/tests/test_nullcorr.py
 rapidtide/tests/test_padvec.py
+rapidtide/tests/test_parserfuncs.py
 rapidtide/tests/test_phaseanalysis.py
 rapidtide/tests/test_rapidtideparser.py
 rapidtide/tests/test_refinedelay.py

rapidtide-3.0.5/setup.py

@@ -0,0 +1,8 @@
+# Stub file to call setuptools.setup with versioneer hooks
+from setuptools import setup
+from versioneer import get_version, get_cmdclass
+
+setup(
+    version=get_version(),
+    cmdclass=get_cmdclass(),
+)