q-elink 0.1.0__tar.gz

q_elink-0.1.0/.gitignore

@@ -0,0 +1,51 @@
+# uv local overrides
+uv.toml
+
+# Byte-compiled
+__pycache__/
+*.py[cod]
+*$py.class
+
+# Packageing
+build/
+dist/
+*.egg-info/
+.eggs/
+
+# Environments
+.venv/
+venv/
+env/
+.env
+
+# Testing
+.pytest_cache/
+.coverage
+htmlcov/
+.tox/
+.nox/
+
+# Type checkers
+.mypy_cache/
+.ruff_cache/
+.pyright/
+
+# Jupyter
+.ipynb_checkpoints/
+
+# IDE
+.vscode/
+.idea/
+
+# OS
+.DS_Store
+
+# AI assistants
+.gemini/
+.claude/
+CLAUDE.md
+
+# Others...
+local/
+tmp/
+repomix-*.xml

q_elink-0.1.0/LICENSE

@@ -0,0 +1,202 @@
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+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
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+   Copyright 2016 Bastien Grivet
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q_elink-0.1.0/PKG-INFO

@@ -0,0 +1,154 @@
+Metadata-Version: 2.4
+Name: q-elink
+Version: 0.1.0
+Summary: Numerical characterization of an elementary link of a quantum repeater: local probabilities, visibility, entanglement witness, etc.
+Author-email: Bastien Grivet <73183679+BastienGrvt@users.noreply.github.com>
+License-Expression: Apache-2.0
+License-File: LICENSE
+Requires-Python: <4,>=3.13
+Requires-Dist: bastools>=0.1.1
+Requires-Dist: matplotlib<4,>=3.10.3
+Requires-Dist: numpy<3,>=2.3.1
+Requires-Dist: rich<15,>=14.1.0
+Requires-Dist: scipy<2,>=1.16.1
+Requires-Dist: tqdm<5,>=4.67.1
+Description-Content-Type: text/markdown
+
+# q-elink
+
+A Python library for the modelization of quantum elementary links. It provides tools to simulate, analyze, and fit experimental data related to quantum entanglement and quantum communication.
+
+## Features
+
+- **Quantum Elementary Link Modeling**: Core classes to define and parameterize a quantum elementary link.
+- **Local Probability Calculation**: Compute heralded and local detection probabilities.
+- **Entanglement Witnessing**: Tools for entanglement witnessing analysis.
+- **Data Fitting**: Functionality to fit the theoretical model to experimental data.
+- **Visualization**: Built-in plotting functions to visualize results.
+
+## Installation
+
+### From PyPI
+
+Using [uv](https://docs.astral.sh/uv/):
+
+```bash
+uv add q-elink
+```
+
+Or with pip:
+
+```bash
+pip install q-elink
+```
+
+### From source
+
+For development or to run the examples:
+
+1.  Clone the repository:
+```bash
+    git clone https://github.com/your-username/q-elink.git
+    cd q-elink
+```
+
+2.  Install dependencies using uv:
+```bash
+    uv sync
+```
+
+## Basic Usage
+
+Here is a minimal example of how to use the library to define an elementary link, set its parameters, and calculate local probabilities.
+
+```python
+import q_elink as ql
+
+# 1. Define the parameters for the elementary link
+param_elink = {
+    'p_A': 0.01,
+    'p_B': 0.08,
+    'eta_0': 1e-3,
+    'eta_A': 0.01,
+    'eta_B': 0.01,
+    'dc_0': 1e-4,
+    'dc_A': 1e-4,
+    'dc_B': 1e-4,
+}
+
+# 2. Create an ElementaryLink instance and set its parameters
+elink = ql.ElementaryLink()
+elink.set_param(param_elink)
+
+# 3. Create a LocalProbabilityModel for calculations
+local_proba = ql.LocalProbabilityModel(elink)
+
+# Optional: Set parameters for local detection stages
+param_detect = {
+    'eta_A': 1.0,
+    'eta_B': 1.0,
+    'dc_A': 0.0,
+    'dc_B': 0.0,
+}
+local_proba.set_param(param_detect)
+
+# 4. Calculate probabilities
+proba_herald = local_proba.get_p_herald()
+p00, p01, p10, p11 = local_proba.get_proba()
+
+# 5. Print the results
+print("=== Probabilities ===")
+print(f"Heralding probability: {proba_herald}")
+print(f"Local probabilities:")
+print(f"p00 (no-click | no-click) = {p00}")
+print(f"p01 (no-click | click)    = {p01}")
+print(f"p10 (click | no-click)    = {p10}")
+print(f"p11 (click | click)       = {p11}")
+
+# 6. Plot the probabilities against pump values
+# fig, ax = local_proba.plot_proba()
+# fig.show()
+```
+
+## Modules
+
+The library is organized into the following main modules:
+
+-   `src/q_elink/core/link.py`: Contains the core data structure `ElementaryLink` for the quantum elementary link model.
+-   `src/q_elink/local_probabilities/model.py`: Contains `LocalProbabilityModel` and `CoincidenceProbabilityModel` for calculating detection probabilities and coincidences.
+-   `src/q_elink/local_probabilities/fitter.py`: Contains `LocalProbabilityFitter` and `LocalProbabilityExperiment` classes for fitting the theoretical model to experimental data.
+-   `src/q_elink/local_probabilities/handler.py`: Contains `FitResultAnalyzer` for processing and analyzing fit results.
+-   `src/q_elink/visibility/model.py`: Contains `InterferenceModel` for visibility and interference calculations.
+-   `src/q_elink/witness/model.py`: Provides the `EntanglementWitness` class and related tools for entanglement witnessing.
+
+## Running the Examples
+
+The `examples/` directory contains scripts that demonstrate various features of the library. Each example is meant to be run as-is from the repository root with `uv run`.
+
+For example, to run the elementary link example:
+```bash
+uv run python examples/elementary_link/elemnetary_link.py
+```
+
+To run the coincidence measurement example:
+```bash
+uv run python examples/local_proba/proba_coincidence.py
+```
+
+To run the local probability fitting example, first generate a synthetic
+dataset (written to `local/dataset/`), then fit and analyze it (figures are
+written to `local/fig/`):
+```bash
+uv run python examples/dataset/create_dataset_local_proba.py
+uv run python examples/local_proba/fit_proba.py
+uv run python examples/local_proba/fit_analyzer.py
+```
+
+## Core Dependencies
+
+Standard python dependencies:
+-   [NumPy](https://numpy.org/): For numerical operations.
+-   [SciPy](https://scipy.org/): For scientific computing, particularly for data fitting.
+-   [Matplotlib](https://matplotlib.org/): For plotting and visualizations.
+-   [tqdm](https://github.com/tqdm/tqdm): For progress bars.
+

q_elink-0.1.0/README.md

@@ -0,0 +1,138 @@
+# q-elink
+
+A Python library for the modelization of quantum elementary links. It provides tools to simulate, analyze, and fit experimental data related to quantum entanglement and quantum communication.
+
+## Features
+
+- **Quantum Elementary Link Modeling**: Core classes to define and parameterize a quantum elementary link.
+- **Local Probability Calculation**: Compute heralded and local detection probabilities.
+- **Entanglement Witnessing**: Tools for entanglement witnessing analysis.
+- **Data Fitting**: Functionality to fit the theoretical model to experimental data.
+- **Visualization**: Built-in plotting functions to visualize results.
+
+## Installation
+
+### From PyPI
+
+Using [uv](https://docs.astral.sh/uv/):
+
+```bash
+uv add q-elink
+```
+
+Or with pip:
+
+```bash
+pip install q-elink
+```
+
+### From source
+
+For development or to run the examples:
+
+1.  Clone the repository:
+```bash
+    git clone https://github.com/your-username/q-elink.git
+    cd q-elink
+```
+
+2.  Install dependencies using uv:
+```bash
+    uv sync
+```
+
+## Basic Usage
+
+Here is a minimal example of how to use the library to define an elementary link, set its parameters, and calculate local probabilities.
+
+```python
+import q_elink as ql
+
+# 1. Define the parameters for the elementary link
+param_elink = {
+    'p_A': 0.01,
+    'p_B': 0.08,
+    'eta_0': 1e-3,
+    'eta_A': 0.01,
+    'eta_B': 0.01,
+    'dc_0': 1e-4,
+    'dc_A': 1e-4,
+    'dc_B': 1e-4,
+}
+
+# 2. Create an ElementaryLink instance and set its parameters
+elink = ql.ElementaryLink()
+elink.set_param(param_elink)
+
+# 3. Create a LocalProbabilityModel for calculations
+local_proba = ql.LocalProbabilityModel(elink)
+
+# Optional: Set parameters for local detection stages
+param_detect = {
+    'eta_A': 1.0,
+    'eta_B': 1.0,
+    'dc_A': 0.0,
+    'dc_B': 0.0,
+}
+local_proba.set_param(param_detect)
+
+# 4. Calculate probabilities
+proba_herald = local_proba.get_p_herald()
+p00, p01, p10, p11 = local_proba.get_proba()
+
+# 5. Print the results
+print("=== Probabilities ===")
+print(f"Heralding probability: {proba_herald}")
+print(f"Local probabilities:")
+print(f"p00 (no-click | no-click) = {p00}")
+print(f"p01 (no-click | click)    = {p01}")
+print(f"p10 (click | no-click)    = {p10}")
+print(f"p11 (click | click)       = {p11}")
+
+# 6. Plot the probabilities against pump values
+# fig, ax = local_proba.plot_proba()
+# fig.show()
+```
+
+## Modules
+
+The library is organized into the following main modules:
+
+-   `src/q_elink/core/link.py`: Contains the core data structure `ElementaryLink` for the quantum elementary link model.
+-   `src/q_elink/local_probabilities/model.py`: Contains `LocalProbabilityModel` and `CoincidenceProbabilityModel` for calculating detection probabilities and coincidences.
+-   `src/q_elink/local_probabilities/fitter.py`: Contains `LocalProbabilityFitter` and `LocalProbabilityExperiment` classes for fitting the theoretical model to experimental data.
+-   `src/q_elink/local_probabilities/handler.py`: Contains `FitResultAnalyzer` for processing and analyzing fit results.
+-   `src/q_elink/visibility/model.py`: Contains `InterferenceModel` for visibility and interference calculations.
+-   `src/q_elink/witness/model.py`: Provides the `EntanglementWitness` class and related tools for entanglement witnessing.
+
+## Running the Examples
+
+The `examples/` directory contains scripts that demonstrate various features of the library. Each example is meant to be run as-is from the repository root with `uv run`.
+
+For example, to run the elementary link example:
+```bash
+uv run python examples/elementary_link/elemnetary_link.py
+```
+
+To run the coincidence measurement example:
+```bash
+uv run python examples/local_proba/proba_coincidence.py
+```
+
+To run the local probability fitting example, first generate a synthetic
+dataset (written to `local/dataset/`), then fit and analyze it (figures are
+written to `local/fig/`):
+```bash
+uv run python examples/dataset/create_dataset_local_proba.py
+uv run python examples/local_proba/fit_proba.py
+uv run python examples/local_proba/fit_analyzer.py
+```
+
+## Core Dependencies
+
+Standard python dependencies:
+-   [NumPy](https://numpy.org/): For numerical operations.
+-   [SciPy](https://scipy.org/): For scientific computing, particularly for data fitting.
+-   [Matplotlib](https://matplotlib.org/): For plotting and visualizations.
+-   [tqdm](https://github.com/tqdm/tqdm): For progress bars.
+

q_elink-0.1.0/examples/dataset/create_dataset_fringe.py

@@ -0,0 +1,65 @@
+"""Generate a synthetic interference-fringe dataset to test a visibility fit.
+
+Sets a known elementary link, computes the coincidence probability as a
+function of the analysis phase theta over [-pi, pi], then adds noise: a
+constant vertical offset, a small global phase drift, and per-point scatter.
+The dataset is stored in local/dataset/.
+"""
+import json
+from pathlib import Path
+
+import numpy as np
+
+import q_elink as ql
+
+# ----- Output path -----
+path_dataset = Path("local/dataset")
+path_dataset.mkdir(parents=True, exist_ok=True)
+out_file = path_dataset / "fringe.json"
+
+# ----- Ground-truth model -----
+rng_seed = 42
+rng = np.random.default_rng(rng_seed)
+
+ground_truth = {
+    "p_A": 0.05,
+    "p_B": 0.05,
+    "eta_0": 1e-2,
+    "eta_A": 0.1,
+    "eta_B": 0.1,
+    "dc_0": 1e-4,
+    "dc_A": 1e-4,
+    "dc_B": 1e-4,
+}
+
+elink = ql.ElementaryLink()
+elink.set_param(ground_truth)
+model_visib = ql.InterferenceModel(elink)
+
+# ----- Phase sampling -----
+n_data = 10
+theta = np.linspace(-np.pi, np.pi, n_data)
+
+# ----- Noise model -----
+offset = 5e-3          # constant vertical offset
+phase_drift = 0.15     # small global phase drift (rad)
+noise_std_ratio = 0.03  # per-point relative scatter
+
+proba_clean = np.array([model_visib.get_proba_coincidence(t + phase_drift) for t in theta])
+proba_noisy = proba_clean + offset + rng.normal(0, noise_std_ratio * np.abs(proba_clean))
+
+# ----- Save -----
+dataset = {
+    "ground_truth": ground_truth,
+    "noise": {
+        "offset": offset,
+        "phase_drift": phase_drift,
+        "noise_std_ratio": noise_std_ratio,
+    },
+    "theta": theta.tolist(),
+    "proba_coincidence": proba_noisy.tolist(),
+}
+with open(out_file, "w") as f:
+    json.dump(dataset, f, indent=4)
+
+print(f"Fringe dataset written to {out_file}")

q_elink-0.1.0/examples/dataset/create_dataset_local_proba.py

@@ -0,0 +1,68 @@
+"""Generate a synthetic local-probability dataset to test the fit.
+
+Sets a known elementary link, computes the local probabilities
+(p00, p01, p10, p11) without displacement (alpha = beta = 0) for a handful of
+pump values, adds a bit of noise, and stores the result in local/dataset/.
+The dataset is consumed by examples/local_proba/fit_proba.py.
+"""
+import json
+from pathlib import Path
+
+import numpy as np
+
+import q_elink as ql
+
+# ----- Output path -----
+path_dataset = Path("local/dataset")
+path_dataset.mkdir(parents=True, exist_ok=True)
+out_file = path_dataset / "local_proba.json"
+
+# ----- Ground-truth model -----
+rng_seed = 42
+rng = np.random.default_rng(rng_seed)
+
+# NB: dark counts are given on a log10 scale (set_param with log_dc=True).
+ground_truth = {
+    "eta_0": 1e-2,
+    "eta_A": 0.1,
+    "eta_B": 0.1,
+    "dc_0": -4,
+    "dc_A": -4,
+    "dc_B": -4,
+}
+
+elink = ql.ElementaryLink()
+elink.set_param(ground_truth, log_dc=True)
+local_proba = ql.LocalProbabilityModel(elink)
+
+# ----- Pump sampling (max pump p = 0.2) -----
+n_data = 5
+p_min, p_max = 0.03, 0.2
+p_A = np.linspace(p_min, p_max, n_data)
+p_B = p_A + rng.normal(0, 0.03 * np.abs(p_A))  # slight A/B asymmetry
+
+# ----- Compute local probabilities (no displacement: alpha = beta = 0) -----
+def sample(getter, p_a, p_b):
+    local_proba.set_pump(p_A=p_a, p_B=p_b)
+    return getter()
+
+proba_dict = {}
+for key, getter in [
+    ("p00", local_proba.get_p00),
+    ("p01", local_proba.get_p01),
+    ("p10", local_proba.get_p10),
+    ("p11", local_proba.get_p11),
+]:
+    values = np.array([sample(getter, p_a, p_b) for p_a, p_b in zip(p_A, p_B)])
+    proba_dict[key] = values + rng.normal(0, 0.01 * np.abs(values))  # relative noise
+
+# ----- Save -----
+dataset = {
+    "ground_truth": ground_truth,
+    "pump_dict": {"p_A": p_A.tolist(), "p_B": p_B.tolist()},
+    "proba_dict": {key: value.tolist() for key, value in proba_dict.items()},
+}
+with open(out_file, "w") as f:
+    json.dump(dataset, f, indent=4)
+
+print(f"Local-probability dataset written to {out_file}")