pyxmipp3 0.1.0__tar.gz

pyxmipp3-0.1.0/.github/workflows/build-and-test.yml

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+name: Build and test
+
+on:
+  pull_request:
+
+  workflow_dispatch:
+
+jobs:
+  build_with_cmake:
+    name: CMake
+    strategy:
+      matrix:
+        os:
+        - ubuntu-latest
+        compiler: 
+        - {cc: gcc, cxx: g++}
+        - {cc: clang, cxx: clang++}
+        
+        #include:
+        #- os: macos-latest
+        #  compiler: {cc: clang, cxx: clang++}
+        #- os: windows-latest
+        #  compiler: {cc: cl, cxx: cl}
+          
+    runs-on: ${{ matrix.os }}
+    env:
+      BUILD_TYPE: Debug
+    defaults:
+      run:
+        shell: bash -el {0}
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v6
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+
+      - name: Install NumPy
+        run: |
+          pip install numpy
+        
+      - name: Configure and build with CMake
+        uses: threeal/cmake-action@v2
+        with:
+          source-dir: ${{ github.workspace }}
+          build-dir: "${{ github.workspace }}/build"
+          c-compiler: ${{ matrix.compiler.cc }}
+          cxx-compiler: ${{ matrix.compiler.cxx }}
+          options: |
+            CMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }}
+          run-build: true
+          build-args: --config ${{ env.BUILD_TYPE }}
+
+  build_with_pip:
+    name: pip
+    strategy:
+      matrix:
+        os:
+        - ubuntu-latest
+        - ubuntu-22.04
+        #- macos-latest
+        #- windows-latest
+        python-version:
+        - '3.14'
+  
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -el {0}
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v6
+      
+      - name: Set up Python
+        uses: actions/setup-python@v6
+        with:
+          python-version: ${{ matrix.python-version }}
+  
+      - name: Upgrade pip
+        if: matrix.os == 'ubuntu-22.04'
+        run: python -m pip install --upgrade pip packaging
+
+      - name: Install with pip
+        run: pip install . -v
+
+      - name: Test installation
+        run: python -c "import xmippLib"
+      

pyxmipp3-0.1.0/.github/workflows/release.yml

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+name: Deploy release
+
+on:
+  push:
+    tags:
+      - 'v[0-9]+.[0-9]+.[0-9]+'
+    branches:
+      - main
+
+  pull_request:
+    branches:
+      - main
+    paths:
+      - 'pyproject.toml'
+
+  workflow_dispatch:
+
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }} (${{ matrix.architectures }})
+    strategy:
+      matrix:
+        include:
+          - os: ubuntu-latest
+            architectures: "x86_64"
+          - os: ubuntu-24.04-arm
+            architectures: "aarch64"
+          #- os: macos-latest
+          #  architectures: "x86_64 arm64 universal2"
+          #- os: windows-latest
+          #  architectures: "AMD64 ARM64"
+
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v6
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v3.3.1
+        env:
+          CIBW_ARCHS: "${{ matrix.architectures }}"
+          CIBW_SKIP: "cp3??t-* *musllinux*"
+          CIBW_TEST_COMMAND: "python -c \"import xmippLib\""
+          CIBW_REPAIR_WHEEL_COMMAND_LINUX: >
+            auditwheel repair -w {dest_dir} {wheel} 
+          CIBW_REPAIR_WHEEL_COMMAND_MACOS: >
+            delocate-wheel --require-archs {delocate_archs} 
+            -w {dest_dir} -v {wheel}
+            --ignore-missing-dependencies
+
+      - name: Upload wheels
+        uses: actions/upload-artifact@v6
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl
+
+  build_sdist:
+    name: Build source distribution
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v6
+
+      - name: Install build tool
+        run: pip install build
+
+      - name: Build sdist
+        run: python -m build --sdist
+
+      - uses: actions/upload-artifact@v6
+        with:
+          name: cibw-sdist
+          path: dist/*.tar.gz
+
+  upload_pypi:
+    name: Upload to PyPI
+    needs: [build_wheels, build_sdist]
+    if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pyxmipp3
+    permissions:
+      id-token: write
+    steps:
+      - uses: actions/download-artifact@v7
+        with:
+          pattern: cibw-*
+          path: dist
+          merge-multiple: true
+
+      - name: List artifacts
+        run: ls -l ./dist
+
+      - name: Upload to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

pyxmipp3-0.1.0/.gitignore

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+# Prerequisites
+*.d
+
+# Compiled Object files
+*.slo
+*.lo
+*.o
+*.obj
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Linker files
+*.ilk
+
+# Debugger Files
+*.pdb
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+*.dll
+
+# Fortran module files
+*.mod
+*.smod
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+*.lib
+
+# Executables
+*.exe
+*.out
+*.app
+
+# debug information files
+*.dwo
+
+# CMake build
+build/*
+
+# Python virtual environments used for testing
+env
+venv

pyxmipp3-0.1.0/CMakeLists.txt

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+cmake_minimum_required(VERSION 3.18)
+
+# Define the project
+file(READ ${CMAKE_CURRENT_SOURCE_DIR}/VERSION PROJECT_VERSION)
+string(STRIP "${PROJECT_VERSION}" PROJECT_VERSION)
+project(
+    pyxmipp3
+	VERSION ${PROJECT_VERSION}
+	LANGUAGES C CXX
+)
+
+# Include CTest to provide BUILD_TESTING option
+include(FetchContent)
+include(GNUInstallDirs)
+
+# Set the module path
+list(APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_SOURCE_DIR}/cmake/modules)
+
+find_package(Threads REQUIRED)
+find_package(Python REQUIRED COMPONENTS Interpreter Development.Module NumPy)
+
+include(fetch_hdf5)
+include(fetch_sqlite3)
+include(fetch_fftw3)
+include(fetch_libtiff)
+include(fetch_libjpeg)
+
+fetch_hdf5()
+fetch_sqlite3()
+fetch_fftw3()
+fetch_libtiff()
+fetch_libjpeg()
+
+if(SKBUILD_PLATLIB_DIR)
+	set(PYTHON_INSTALL_DIR "${SKBUILD_PLATLIB_DIR}")
+else()
+	set(PYTHON_INSTALL_DIR "${Python_SITEARCH}")
+endif()
+
+# Set project-wide compilation options
+set(CMAKE_CXX_STANDARD 17)
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+
+# Add sources
+add_subdirectory(src)