pyxetabase 3.1.0.dev9__tar.gz → 3.1.0.dev10__tar.gz

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  1. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/PKG-INFO +1 -1
  2. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/opencga_config.py +11 -2
  3. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/file_client.py +1 -1
  4. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase.egg-info/PKG-INFO +1 -1
  5. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/setup.py +1 -1
  6. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/LICENSE +0 -0
  7. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/README.rst +0 -0
  8. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/__init__.py +0 -0
  9. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/commons.py +0 -0
  10. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/exceptions.py +0 -0
  11. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/opencga_client.py +0 -0
  12. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/__init__.py +0 -0
  13. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/_parent_rest_clients.py +0 -0
  14. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/admin_client.py +0 -0
  15. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/alignment_client.py +0 -0
  16. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/clinical_analysis_client.py +0 -0
  17. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/cohort_client.py +0 -0
  18. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/cvdb_client.py +0 -0
  19. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/disease_panel_client.py +0 -0
  20. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/family_client.py +0 -0
  21. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/federation_client.py +0 -0
  22. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/ga4gh_client.py +0 -0
  23. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/individual_client.py +0 -0
  24. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/job_client.py +0 -0
  25. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/meta_client.py +0 -0
  26. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/organization_client.py +0 -0
  27. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/project_client.py +0 -0
  28. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/sample_client.py +0 -0
  29. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/study_client.py +0 -0
  30. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/user_client.py +0 -0
  31. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/variant_client.py +0 -0
  32. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/variant_operation_client.py +0 -0
  33. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/workflow_client.py +0 -0
  34. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_response.py +0 -0
  35. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/retry.py +0 -0
  36. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase.egg-info/SOURCES.txt +0 -0
  37. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase.egg-info/dependency_links.txt +0 -0
  38. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase.egg-info/requires.txt +0 -0
  39. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase.egg-info/top_level.txt +0 -0
  40. {pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/setup.cfg +0 -0
{pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pyxetabase
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- Version: 3.1.0.dev9
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+ Version: 3.1.0.dev10
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  Summary: A REST client for OpenCGA enterprise REST web services
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  Author: Daniel Perez-Gil
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  Author-email: daniel.perez@zettagenomics.com
{pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/opencga_config.py RENAMED
@@ -37,12 +37,21 @@ class ClientConfiguration(object):
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  return config_dict
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  def get_sso_login_info(self):
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+ # Checking if SSO login is specified
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  if (('sso_login' in self._config and self._config['sso_login']) or
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  ('cookies' in self._config and self._config['cookies'])):
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- python_session_fhand = open(os.path.expanduser("~/.opencga/session.json"), 'r')
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+
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+ # Getting session file name
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+ if 'name' in self._config['rest'] and self._config['rest']['name']:
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+ host_name = self._config['rest']['name']
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+ else:
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+ host_name = 'opencga'
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+ python_session_fhand = open(os.path.expanduser("~/.opencga/{}_session.json".format(host_name)), 'r')
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+
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+ # Loading info from session file
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  session_info = json.loads(python_session_fhand.read())
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  self._config['sso_login'] = True
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- self._config['cookies'] = session_info['cookies']
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+ self._config['cookies'] = session_info['attributes']['cookies']
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  self._config['token'] = session_info['token']
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  def _validate_configuration(self):
{pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase/rest_clients/file_client.py RENAMED
@@ -420,7 +420,7 @@ class File(_ParentRestClient):
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  MICROARRAY_EXPRESSION_TWOCHANNELS_GENEPIX DATAMATRIX_EXPRESSION
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  IDLIST IDLIST_RANKED ANNOTATION_GENEVSANNOTATION OTHER_NEWICK
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  OTHER_BLAST OTHER_INTERACTION OTHER_GENOTYPE OTHER_PLINK OTHER_VCF
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- OTHER_PED VCF4 VARIANT ALIGNMENT COVERAGE SEQUENCE PEDIGREE
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+ OTHER_PED VCF4 CVDB VARIANT ALIGNMENT COVERAGE SEQUENCE PEDIGREE
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  REFERENCE_GENOME NONE UNKNOWN']
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  :param str checksum: Expected MD5 file checksum.
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  :param bool resource: Boolean field indicating whether the file is a
{pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/pyxetabase.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pyxetabase
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- Version: 3.1.0.dev9
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+ Version: 3.1.0.dev10
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  Summary: A REST client for OpenCGA enterprise REST web services
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  Author: Daniel Perez-Gil
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  Author-email: daniel.perez@zettagenomics.com
{pyxetabase-3.1.0.dev9 → pyxetabase-3.1.0.dev10}/setup.py RENAMED
@@ -14,7 +14,7 @@ with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
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  setup(
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  name='pyxetabase',
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- version='3.1.0.dev9',
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+ version='3.1.0.dev10',
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  description='A REST client for OpenCGA enterprise REST web services',
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  long_description=long_description,
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  long_description_content_type='text/x-rst',