pyxetabase 3.1.0.dev23__tar.gz → 3.1.0.dev24__tar.gz
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- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/PKG-INFO +1 -1
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/variant_operation_client.py +27 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase.egg-info/PKG-INFO +1 -1
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/setup.py +1 -1
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/LICENSE +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/README.rst +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/__init__.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/commons.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/exceptions.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/opencga_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/opencga_config.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/__init__.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/_parent_rest_clients.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/admin_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/alignment_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/clinical_analysis_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/cohort_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/cvdb_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/disease_panel_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/family_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/federation_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/file_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/ga4gh_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/individual_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/job_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/meta_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/organization_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/project_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/sample_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/study_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/user_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/variant_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/workflow_client.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_response.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/retry.py +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase.egg-info/SOURCES.txt +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase.egg-info/dependency_links.txt +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase.egg-info/requires.txt +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase.egg-info/top_level.txt +0 -0
- {pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/setup.cfg +0 -0
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@@ -86,6 +86,33 @@ class VariantOperation(_ParentRestClient):
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return self._delete(category='operation', resource='delete', subcategory='variant/annotation', **options)
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def variant_annotation_extension_configure(self, data=None, **options):
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"""
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Install a variant annotation extension and configure the project to
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use it.
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PATH: /{apiVersion}/operation/variant/annotation/extension/configure
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:param str job_id: Job ID. It must be a unique string within the
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study. An ID will be autogenerated automatically if not provided.
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:param str job_description: Job description.
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:param str job_depends_on: Comma separated list of existing job IDs
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the job will depend on.
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:param str job_tags: Job tags.
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:param str job_scheduled_start_time: Time when the job is scheduled to
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start.
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:param str job_priority: Priority of the job.
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:param bool job_dry_run: Flag indicating that the job will be executed
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in dry-run mode. In this mode, OpenCGA will validate that all
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parameters and prerequisites are correctly set for successful
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execution, but the job will not actually run.
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:param str study: Study [[organization@]project:]study where study and
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project can be either the ID or UUID.
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:param dict data: Parameters to configure a variant annotation
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extension.
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"""
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return self._post(category='operation', resource='configure', subcategory='variant/annotation/extension', data=data, **options)
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def index_variant_annotation(self, data=None, **options):
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"""
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Create and load variant annotations into the database.
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@@ -14,7 +14,7 @@ with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
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setup(
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name='pyxetabase',
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version='3.1.0.
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version='3.1.0.dev24',
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description='A REST client for OpenCGA enterprise REST web services',
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long_description=long_description,
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long_description_content_type='text/x-rst',
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{pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/_parent_rest_clients.py
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{pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/alignment_client.py
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{pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/individual_client.py
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{pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/organization_client.py
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{pyxetabase-3.1.0.dev23 → pyxetabase-3.1.0.dev24}/pyxetabase/rest_clients/workflow_client.py
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