pyxetabase 3.1.0.dev0__tar.gz → 3.1.0.dev1__tar.gz

{pyxetabase-3.1.0.dev0 → pyxetabase-3.1.0.dev1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pyxetabase
-Version: 3.1.0.dev0
+Version: 3.1.0.dev1
 Summary: A REST client for OpenCGA enterprise REST web services
 Author: Daniel Perez-Gil
 Author-email: daniel.perez@zettagenomics.com

{pyxetabase-3.1.0.dev0 → pyxetabase-3.1.0.dev1}/pyxetabase/rest_clients/cvdb_client.py

@@ -19,6 +19,33 @@ class CVDB(_ParentRestClient):
     def __init__(self, configuration, token=None, login_handler=None, *args, **kwargs):
         super(CVDB, self).__init__(configuration, token, login_handler, *args, **kwargs)
 
+    def update_acl(self, data=None, **options):
+        """
+        Update the set of permissions granted in CVDB for the OpenCGA users
+            that have access to the clinical analyses.
+        PATH: /{apiVersion}/analysis/cvdb/acl/update
+
+        :param dict data: Parameters for the ACL updating task
+            (cvdb-acl-update). (REQUIRED)
+        :param str study: Study [[organization@]project:]study where study and
+            project can be either the ID or UUID.
+        :param str job_id: Job ID. It must be a unique string within the
+            study. An ID will be autogenerated automatically if not provided.
+        :param str job_description: Job description.
+        :param str job_depends_on: Comma separated list of existing job IDs
+            the job will depend on.
+        :param str job_tags: Job tags.
+        :param str job_scheduled_start_time: Time when the job is scheduled to
+            start.
+        :param str job_priority: Priority of the job.
+        :param bool job_dry_run: Flag indicating that the job will be executed
+            in dry-run mode. In this mode, OpenCGA will validate that all
+            parameters and prerequisites are correctly set for successful
+            execution, but the job will not actually run.
+        """
+
+        return self._post(category='analysis', resource='update', subcategory='cvdb/acl', data=data, **options)
+
     def aggregate_analysis(self, **options):
         """
         Calculate and fetch clinical analysis aggregation stats.

{pyxetabase-3.1.0.dev0 → pyxetabase-3.1.0.dev1}/pyxetabase/rest_clients/meta_client.py

@@ -60,7 +60,8 @@ class Meta(_ParentRestClient):
         Opencga openapi json.
         PATH: /{apiVersion}/meta/openapi
 
-        :param str token: List of categories to get API from.
+        :param str environment: Environment of the app.
+        :param str host: Opencga host without environment.
         """
 
         return self._get(category='meta', resource='openapi', **options)

{pyxetabase-3.1.0.dev0 → pyxetabase-3.1.0.dev1}/pyxetabase/rest_clients/organization_client.py

@@ -113,6 +113,16 @@ class Organization(_ParentRestClient):
 
         return self._post(category='organizations', resource='update', subcategory='notes', second_query_id=id, data=data, **options)
 
+    def reset_user_password(self, **options):
+        """
+        Reset user's password.
+        PATH: /{apiVersion}/organizations/user/password/reset
+
+        :param str user_id: User whose password needs to be reset.
+        """
+
+        return self._post(category='organizations', resource='reset', subcategory='user/password', **options)
+
     def user_update_status(self, user, data=None, **options):
         """
         Update the user status.

{pyxetabase-3.1.0.dev0 → pyxetabase-3.1.0.dev1}/pyxetabase/rest_clients/user_client.py

@@ -185,7 +185,7 @@ class User(_ParentRestClient):
 
     def reset_password(self, user, **options):
         """
-        Reset password.
+        [DEPRECATED].
         PATH: /{apiVersion}/users/{user}/password/reset
 
         :param str user: User ID. (REQUIRED)

{pyxetabase-3.1.0.dev0 → pyxetabase-3.1.0.dev1}/pyxetabase.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pyxetabase
-Version: 3.1.0.dev0
+Version: 3.1.0.dev1
 Summary: A REST client for OpenCGA enterprise REST web services
 Author: Daniel Perez-Gil
 Author-email: daniel.perez@zettagenomics.com

{pyxetabase-3.1.0.dev0 → pyxetabase-3.1.0.dev1}/setup.py

@@ -14,7 +14,7 @@ with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
 
 setup(
     name='pyxetabase',
-    version='3.1.0.dev0',
+    version='3.1.0.dev1',
     description='A REST client for OpenCGA enterprise REST web services',
     long_description=long_description,
     long_description_content_type='text/x-rst',