pywombat 1.0.1__tar.gz → 1.0.2__tar.gz

{pywombat-1.0.1 → pywombat-1.0.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pywombat
-Version: 1.0.1
+Version: 1.0.2
 Summary: A CLI tool for processing and filtering bcftools tabulated TSV files with pedigree support
 Project-URL: Homepage, https://github.com/bourgeron-lab/pywombat
 Project-URL: Repository, https://github.com/bourgeron-lab/pywombat

{pywombat-1.0.1 → pywombat-1.0.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pywombat"
-version = "1.0.1"
+version = "1.0.2"
 description = "A CLI tool for processing and filtering bcftools tabulated TSV files with pedigree support"
 readme = "README.md"
 authors = [{ name = "Freddy Cliquet", email = "fcliquet@pasteur.fr" }]

{pywombat-1.0.1 → pywombat-1.0.2}/src/pywombat/cli.py

@@ -1198,15 +1198,18 @@ def read_pedigree(pedigree_path: Path) -> pl.DataFrame:
     pedigree_df = df.select(select_cols)
 
     # Replace 0 and -9 with null (indicating no parent)
+    # Explicit cast to Utf8 ensures type is preserved even when all values become null
     pedigree_df = pedigree_df.with_columns(
         [
             pl.when(pl.col("father_id").cast(pl.Utf8).is_in(["0", "-9"]))
             .then(None)
             .otherwise(pl.col("father_id"))
+            .cast(pl.Utf8)
             .alias("father_id"),
             pl.when(pl.col("mother_id").cast(pl.Utf8).is_in(["0", "-9"]))
             .then(None)
             .otherwise(pl.col("mother_id"))
+            .cast(pl.Utf8)
             .alias("mother_id"),
         ]
     )