pywavelet 0.2.4__tar.gz → 0.2.6__tar.gz

{pywavelet-0.2.4 → pywavelet-0.2.6}/.github/workflows/ci.yml

@@ -20,7 +20,7 @@ jobs:
 
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.8'
+          python-version: '3.10'
           cache: 'pip' # Enable caching for pip dependencies
 
 

{pywavelet-0.2.4 → pywavelet-0.2.6}/.github/workflows/docs.yml

@@ -21,7 +21,7 @@ jobs:
 
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.8'
+          python-version: '3.10'
           cache: 'pip' # Enable caching for pip dependencies
 
       - run: python -m pip install -e .[dev]

{pywavelet-0.2.4 → pywavelet-0.2.6}/.github/workflows/pypi.yml

@@ -27,7 +27,7 @@ jobs:
 
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.8'
+          python-version: '3.10'
           cache: 'pip' # Enable caching for pip dependencies
 
 

{pywavelet-0.2.4 → pywavelet-0.2.6}/.pre-commit-config.yaml

@@ -1,22 +1,19 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v5.0.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-merge-conflict
       - id: check-yaml
         args: [ --unsafe ]
-  - repo: https://github.com/pre-commit/mirrors-isort
-    rev: v5.10.1
+  - repo: https://github.com/PyCQA/isort
+    rev: 6.0.1
     hooks:
       - id: isort
         args: ["--profile", "black"]
-  - repo: https://github.com/ambv/black
-    rev: 23.10.0
-    hooks:
-      - id: black
   - repo: https://github.com/psf/black
-    rev: "23.10.0"
+    rev: 25.1.0
     hooks:
+      - id: black
       - id: black-jupyter

{pywavelet-0.2.4 → pywavelet-0.2.6}/CHANGELOG.rst

@@ -5,16 +5,211 @@ CHANGELOG
 =========
 
 
+.. _changelog-v0.2.6:
+
+v0.2.6 (2025-03-24)
+===================
+
+Bug Fixes
+---------
+
+* fix: add note in readme about JAX and cupy (`d3cd8d9`_)
+
+Unknown
+-------
+
+* add runtimes (`6cdfb28`_)
+
+* add runtime plot (`14b250b`_)
+
+* add runtime doc (`3d8b4cd`_)
+
+* add runtime doc (`7230f92`_)
+
+* add more tests and runtime doc (`b8dce3f`_)
+
+* add roundtrip comparisons (`81d6fc7`_)
+
+* remove dt (`d78b4b3`_)
+
+* remove mult (`b5ab983`_)
+
+*  add corrected sinewave for roundtrip test, remove incorrect f0 test (`e2f8317`_)
+
+* add WDM amplitude tests (`b99fc0d`_)
+
+* add various transforms (`7d97420`_)
+
+* fix cupy inverse (`b1f7dfa`_)
+
+* add plotting (`b0ad4fa`_)
+
+* add more tests (`aaeae9b`_)
+
+* add more tests (`6627e03`_)
+
+* add backend test (`ccb1193`_)
+
+* add more logging (`f2d6541`_)
+
+* add more logs (`0828947`_)
+
+* add more tests (`8c80929`_)
+
+* add more tests (`d1cb636`_)
+
+* Merge branch 'main' of github.com:pywavelet/pywavelet (`ab6ba0e`_)
+
+* Update __init__.py (`b607ae9`_)
+
+* add more logs (`60e9525`_)
+
+* add notes (`83e4ff6`_)
+
+* increase the py version (`0d6568b`_)
+
+* setup testing framework for cupy (`5009d79`_)
+
+* add typing for phi (`16ef510`_)
+
+* Check which backend (`f17fe1b`_)
+
+* Check which backend (`196141c`_)
+
+* add typing libs (beartype + Jaxtyping) (`3bffe6a`_)
+
+* Add support for more backends (`dadf161`_)
+
+* Adding cupy methods (`9fe44ab`_)
+
+* Remove unnecessary beta(d,d,1) (`19b6d8e`_)
+
+* Remove unused imports (`a2b42c8`_)
+
+* run formatters (`380fba8`_)
+
+* begin adding cupy (`93e0123`_)
+
+* add more tests (`a91f509`_)
+
+* Merge branch 'main' of github.com:avivajpeyi/pywavelet into main (`a149dc4`_)
+
+* [pre-commit.ci] pre-commit autoupdate (#21)
+
+* [pre-commit.ci] pre-commit autoupdate
+
+updates:
+- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v5.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v5.0.0)
+- https://github.com/pre-commit/mirrors-isort → https://github.com/PyCQA/isort
+- [github.com/PyCQA/isort: v5.10.1 → 6.0.1](https://github.com/PyCQA/isort/compare/v5.10.1...6.0.1)
+- https://github.com/ambv/black → https://github.com/psf/black
+- [github.com/psf/black: 23.10.0 → 25.1.0](https://github.com/psf/black/compare/23.10.0...25.1.0)
+- [github.com/psf/black: 23.10.0 → 25.1.0](https://github.com/psf/black/compare/23.10.0...25.1.0)
+
+* [pre-commit.ci] auto fixes from pre-commit.com hooks
+
+for more information, see https://pre-commit.ci
+
+---------
+
+Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> (`6623f65`_)
+
+* add check for vmin > vmax (`2d6eec3`_)
+
+* more plotting for phi (`b124dc7`_)
+
+* add additional JAX tests (`c0d8396`_)
+
+.. _d3cd8d9: https://github.com/pywavelet/pywavelet/commit/d3cd8d92b5e6cf398ff3a4948b911533abe842f1
+.. _6cdfb28: https://github.com/pywavelet/pywavelet/commit/6cdfb28b152a7f7ad499f0b6ba6ef69da9284c57
+.. _14b250b: https://github.com/pywavelet/pywavelet/commit/14b250b55dbea88c3b7c22b5faca531113d34477
+.. _3d8b4cd: https://github.com/pywavelet/pywavelet/commit/3d8b4cdc8dea6af33b08985cb97f0897984838fc
+.. _7230f92: https://github.com/pywavelet/pywavelet/commit/7230f92dee98cea0e402111ad279f78c6134d565
+.. _b8dce3f: https://github.com/pywavelet/pywavelet/commit/b8dce3fdf2f0b1261b6a74aa8af03465c87017ff
+.. _81d6fc7: https://github.com/pywavelet/pywavelet/commit/81d6fc73ec9c37d7e5990f7008f1a468490b17ea
+.. _d78b4b3: https://github.com/pywavelet/pywavelet/commit/d78b4b32b81b1b2e8bc6c4808c088df140f316dd
+.. _b5ab983: https://github.com/pywavelet/pywavelet/commit/b5ab983f88a4dc5f6b7e75aa9c974f1c0c601d03
+.. _e2f8317: https://github.com/pywavelet/pywavelet/commit/e2f8317f980927f34fc447e3b093ca43e2f8f3c2
+.. _b99fc0d: https://github.com/pywavelet/pywavelet/commit/b99fc0d3a29b8c741c92e6a1cae9eabc409d1fbc
+.. _7d97420: https://github.com/pywavelet/pywavelet/commit/7d97420b945dd8abb4dd9e201246719d39c4bc4c
+.. _b1f7dfa: https://github.com/pywavelet/pywavelet/commit/b1f7dfa17df3215260150e41c0cf84e76a354d1b
+.. _b0ad4fa: https://github.com/pywavelet/pywavelet/commit/b0ad4fad4537bf3375bb100f6b5be3042291e31e
+.. _aaeae9b: https://github.com/pywavelet/pywavelet/commit/aaeae9b232e4328bfa2a566c7438f41f2dca0e31
+.. _6627e03: https://github.com/pywavelet/pywavelet/commit/6627e0353d539b358e8bc6e786d3442a2b2b8072
+.. _ccb1193: https://github.com/pywavelet/pywavelet/commit/ccb1193e968c9617ed866318326421fb2ae80645
+.. _f2d6541: https://github.com/pywavelet/pywavelet/commit/f2d6541caa41f171a19abd5cfdb3e132fc831b8b
+.. _0828947: https://github.com/pywavelet/pywavelet/commit/082894710eaa2f4a485a86524917068e3098b0c4
+.. _8c80929: https://github.com/pywavelet/pywavelet/commit/8c80929e35211d482d15845fd9ef0cca62704b4b
+.. _d1cb636: https://github.com/pywavelet/pywavelet/commit/d1cb636fb92fbec238de89129729a70f7fa33bb6
+.. _ab6ba0e: https://github.com/pywavelet/pywavelet/commit/ab6ba0ed98a6597c9c8aef524a2f03b1b6fbd13e
+.. _b607ae9: https://github.com/pywavelet/pywavelet/commit/b607ae971f1b04870f41bbaee95a2a30eef628d4
+.. _60e9525: https://github.com/pywavelet/pywavelet/commit/60e952536a2812f474a2845f81dee52884b1685b
+.. _83e4ff6: https://github.com/pywavelet/pywavelet/commit/83e4ff6e5ac5ee1fd51970a73c0401106cff453a
+.. _0d6568b: https://github.com/pywavelet/pywavelet/commit/0d6568bc305d85ac7f5733365e50e51538d45329
+.. _5009d79: https://github.com/pywavelet/pywavelet/commit/5009d7957d9d796a9e2258659e2815a35354a7a5
+.. _16ef510: https://github.com/pywavelet/pywavelet/commit/16ef51086b1ba10db0d4f252caf3a560fee4f06b
+.. _f17fe1b: https://github.com/pywavelet/pywavelet/commit/f17fe1b0cddb4376bdb18a092d6f83bc48dd9498
+.. _196141c: https://github.com/pywavelet/pywavelet/commit/196141ce52946228a92aa1f4b0c14fdc66cb44a1
+.. _3bffe6a: https://github.com/pywavelet/pywavelet/commit/3bffe6a7af4000b1bcece2e2fb1c56487980dd15
+.. _dadf161: https://github.com/pywavelet/pywavelet/commit/dadf161bed6c049c8c24716f475f94b9d6e9fabf
+.. _9fe44ab: https://github.com/pywavelet/pywavelet/commit/9fe44ab0d0862110137e02d746e1af1591373c66
+.. _19b6d8e: https://github.com/pywavelet/pywavelet/commit/19b6d8e169c87f780afe809863762574a9a6334b
+.. _a2b42c8: https://github.com/pywavelet/pywavelet/commit/a2b42c885dd248a2787b6ce7ae549f3d15044af3
+.. _380fba8: https://github.com/pywavelet/pywavelet/commit/380fba8f074d7fbe9bc4ed51461688c45dfc7b0a
+.. _93e0123: https://github.com/pywavelet/pywavelet/commit/93e0123dce8f4bf44249489a55a84865ef989592
+.. _a91f509: https://github.com/pywavelet/pywavelet/commit/a91f509c1c7e18d75c6ceeff22242b1e463f4191
+.. _a149dc4: https://github.com/pywavelet/pywavelet/commit/a149dc4178581f26745b0725346ad469f4aed8d6
+.. _6623f65: https://github.com/pywavelet/pywavelet/commit/6623f65aa13a020120d52363c2bb7b6dd425845f
+.. _2d6eec3: https://github.com/pywavelet/pywavelet/commit/2d6eec342676c1dadb5ce7318edf781572dde5c4
+.. _b124dc7: https://github.com/pywavelet/pywavelet/commit/b124dc75c13540a946b665e0bbb70de43ffe16fd
+.. _c0d8396: https://github.com/pywavelet/pywavelet/commit/c0d8396587737ac9d9559e79c175a043273b8ce6
+
+
+.. _changelog-v0.2.5:
+
+v0.2.5 (2025-01-28)
+===================
+
+Bug Fixes
+---------
+
+* fix: filter first then window (#20)
+
+* fix: filter first then window
+
+* [pre-commit.ci] auto fixes from pre-commit.com hooks
+
+for more information, see https://pre-commit.ci
+
+---------
+
+Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> (`3228f7b`_)
+
+Chores
+------
+
+* chore(release): 0.2.5 (`34b18c7`_)
+
+.. _3228f7b: https://github.com/pywavelet/pywavelet/commit/3228f7be0d7efb48812920e822a14e795ebac57f
+.. _34b18c7: https://github.com/pywavelet/pywavelet/commit/34b18c7d4074992d6c1ce75806efb3edab5ce49b
+
+
 .. _changelog-v0.2.4:
 
 v0.2.4 (2025-01-24)
 ===================
 
+Chores
+------
+
+* chore(release): 0.2.4 (`8ea5b2f`_)
+
 Unknown
 -------
 
 * Merge branch 'main' of github.com:avivajpeyi/pywavelet into main (`d2c84d9`_)
 
+.. _8ea5b2f: https://github.com/pywavelet/pywavelet/commit/8ea5b2fc0ffa5a1cb274273ec48e164f8bd2064a
 .. _d2c84d9: https://github.com/pywavelet/pywavelet/commit/d2c84d980b1701baf99e40ba6191cbd9336cfa59
 
 

{pywavelet-0.2.4 → pywavelet-0.2.6}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: pywavelet
-Version: 0.2.4
+Version: 0.2.6
 Summary: WDM wavelet transform your time/freq series!
 Author-email: Pywavelet Team <avi.vajpeyi@gmail.com>
 Project-URL: Homepage, https://pywavelet.github.io/pywavelet/
@@ -11,7 +11,7 @@ Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3.8
-Requires-Python: >=3.8
+Requires-Python: >=3.10
 Description-Content-Type: text/x-rst
 Requires-Dist: numpy
 Requires-Dist: numba
@@ -21,8 +21,12 @@ Requires-Dist: tqdm
 Requires-Dist: rich
 Requires-Dist: rocket-fft
 Requires-Dist: astropy>=5.2.1
+Requires-Dist: jaxtyping
+Requires-Dist: beartype
 Provides-Extra: jax
 Requires-Dist: jax; extra == "jax"
+Provides-Extra: cupy
+Requires-Dist: cupy; extra == "cupy"
 Provides-Extra: dev
 Requires-Dist: pytest>=6.0; extra == "dev"
 Requires-Dist: pytest-cov>=4.1.0; extra == "dev"
@@ -34,6 +38,7 @@ Requires-Dist: isort; extra == "dev"
 Requires-Dist: mypy; extra == "dev"
 Requires-Dist: jupyter-book; extra == "dev"
 Requires-Dist: GitPython; extra == "dev"
+Requires-Dist: nbconvert; extra == "dev"
 
 pywavelet
 #########
@@ -59,27 +64,33 @@ pywavelet is available on PyPI and can be installed with `pip <https://pip.pypa.
 
     $ pip install pywavelet
 
+
+Note: We have transforms availible in numpy, JAX and Cupy.
+
+
 For developers
 --------------
 
-First set up a conda environment with the latest version of python.
+First set up a conda environment with python 3.10
 
 .. code-block::
 
-    $ conda create -n pywavelet -c conda-forge python=3.12
+    $ mamba create -n pywavelet python=3.10
 
 .. code-block::
 
+    $ CONDA_OVERRIDE_CUDA=12.4  mamba install "jaxlib=*=*cuda*" jax -c conda-forge
+    $ CONDA_OVERRIDE_CUDA=12.4  conda install -c conda-forge cupy-core
     $ pip install -e ".[dev]"
     $ pre-commit install
 
 Test code
 ---------
 
-Locate directory /tests from root directory. run 
+Locate directory /tests from root directory. run
 
 .. code-block::
 
     $ pytest .
 
-Hopefully everything should run fine. 
+Hopefully everything should run fine.

{pywavelet-0.2.4 → pywavelet-0.2.6}/README.rst

@@ -22,27 +22,33 @@ pywavelet is available on PyPI and can be installed with `pip <https://pip.pypa.
 
     $ pip install pywavelet
 
+
+Note: We have transforms availible in numpy, JAX and Cupy.
+
+
 For developers
 --------------
 
-First set up a conda environment with the latest version of python.
+First set up a conda environment with python 3.10
 
 .. code-block::
 
-    $ conda create -n pywavelet -c conda-forge python=3.12
+    $ mamba create -n pywavelet python=3.10
 
 .. code-block::
 
+    $ CONDA_OVERRIDE_CUDA=12.4  mamba install "jaxlib=*=*cuda*" jax -c conda-forge
+    $ CONDA_OVERRIDE_CUDA=12.4  conda install -c conda-forge cupy-core
     $ pip install -e ".[dev]"
     $ pre-commit install
 
 Test code
 ---------
 
-Locate directory /tests from root directory. run 
+Locate directory /tests from root directory. run
 
 .. code-block::
 
     $ pytest .
 
-Hopefully everything should run fine. 
+Hopefully everything should run fine.

{pywavelet-0.2.4 → pywavelet-0.2.6}/docs/_toc.yml

@@ -8,6 +8,7 @@ parts:
   chapters:
   - file: api.rst
   - file: example.ipynb
+  - file: runtime.ipynb
 - caption:  Case Studies
   chapters:
   - url: https://www.youtube.com/watch?v=dQw4w9WgXcQ&themeRefresh=1

{pywavelet-0.2.4 → pywavelet-0.2.6}/docs/api.rst

@@ -32,4 +32,3 @@ Types
 .. autoclass:: pywavelet.transforms.types.Wavelet
     :members:
     :undoc-members:
-

{pywavelet-0.2.4 → pywavelet-0.2.6}/docs/example.ipynb

@@ -4,7 +4,14 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# Examples \n",
+    "<a target=\"_blank\" href=\"https://colab.research.google.com/github/pywavelet/pywavelet/blob/main/docs/example.ipynb\">\n",
+    "  <img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/>\n",
+    "</a>\n",
+    "\n",
+    "# Example\n",
+    "\n",
+    "\n",
+    "\n",
     "## Time to Wavelet\n",
     "\n",
     "\n",
@@ -70,6 +77,7 @@
     "    ax.ticklabel_format(axis=\"x\", style=\"sci\", scilimits=(0, 0))\n",
     "    return ax\n",
     "\n",
+    "\n",
     "# Sizes\n",
     "dt = 1 / 512\n",
     "Nt, Nf = 2**6, 2**6\n",
@@ -88,7 +96,7 @@
     "# transform back to time domain\n",
     "h_reconstructed = from_wavelet_to_time(h_wavelet, dt=h_time.dt, mult=mult)\n",
     "\n",
-    "# Plots \n",
+    "# Plots\n",
     "fig, axes = plt.subplots(1, 4, figsize=(18, 4))\n",
     "_ = h_time.plot_spectrogram(ax=axes[0])\n",
     "_ = h_wavelet.plot(ax=axes[1], absolute=True, cmap=\"Reds\")\n",
@@ -146,7 +154,7 @@
     "freq = np.fft.rfftfreq(N, dt)\n",
     "hf = np.zeros_like(freq, dtype=np.complex128)\n",
     "hf[np.argmin(np.abs(freq - f0))] = 1.0\n",
-    "    \n",
+    "\n",
     "\n",
     "h_freq = FrequencySeries(data=hf, freq=freq)\n",
     "h_wavelet = from_freq_to_wavelet(h_freq, Nf=Nf, Nt=Nt)\n",
@@ -154,10 +162,10 @@
     "\n",
     "\n",
     "fig, axes = plt.subplots(1, 2, figsize=(9, 4))\n",
-    "_ = h_freq.plot(ax=axes[0], label='Original')\n",
+    "_ = h_freq.plot(ax=axes[0], label=\"Original\")\n",
     "_ = h_wavelet.plot(ax=axes[1], absolute=True, cmap=\"Reds\")\n",
-    "_ = h_reconstructed.plot(ax=axes[0], ls=\":\", label='Reconstructed')\n",
-    "axes[1].set_ylim(f0-5, f0+5)\n",
+    "_ = h_reconstructed.plot(ax=axes[0], ls=\":\", label=\"Reconstructed\")\n",
+    "axes[1].set_ylim(f0 - 5, f0 + 5)\n",
     "axes[0].legend()\n",
     "fig.savefig(\"roundtrip_freq.png\")\n",
     "plt.close()"