pywavelet 0.0.1b0__tar.gz

pywavelet-0.0.1b0/.github/workflows/ci.yml

@@ -0,0 +1,42 @@
+name: Python Package Workflow
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+  workflow_dispatch:
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.8'
+          cache: 'pip'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -e .[dev]
+          pre-commit install
+
+      - name: pre-commit
+        run: pre-commit run --all-files --verbose --show-diff-on-failure
+
+      - name: pytest
+        run: pytest --cov='pywavelet' --cov-report term-missing
+
+      - name: Upload Coverage to Coveralls
+        if: ${{ github.ref == 'refs/heads/main' }}
+        run: |
+          coverage xml
+          pip install coveralls
+          coveralls
+        env:
+          COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}

pywavelet-0.0.1b0/.github/workflows/docs.yml

@@ -0,0 +1,39 @@
+name: build-docs
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - 'docs/**'
+
+# This job installs dependencies, builds the book, and pushes it to `gh-pages`
+jobs:
+  deploy-book:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      # Install dependencies
+      - name: Set up Python 3.8
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: Install dependencies
+        run: |
+          pip install -r docs/requirements.txt
+
+      # Build the book
+      - name: Build the book
+        run: |
+          jupyter-book build docs/
+
+      # Push the book's HTML to github-pages
+      - name: GitHub Pages action
+        uses: peaceiris/actions-gh-pages@v3.9.3
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./docs/_build/html

pywavelet-0.0.1b0/.github/workflows/pypi.yml

@@ -0,0 +1,44 @@
+name: Publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+
+on:
+  workflow_dispatch:
+    inputs:
+      logLevel:
+        description: 'Log level'
+        required: true
+        default: 'warning'
+  push:
+    # Pattern matched against refs/tags
+    tags:
+      - '*'
+
+jobs:
+  build-n-publish:
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pywavelet
+    permissions:
+      id-token: write  # Needed for publishing to PyPI
+    name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+    runs-on: ubuntu-20.04
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: '3.8'
+          cache: 'pip'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install setuptools wheel twine build
+      - name: Build a binary wheel and a source tarball
+        run: >-
+          python -m
+          build
+          --sdist
+          --wheel
+          --outdir dist/
+
+      - name: Publish distribution 📦 to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

pywavelet-0.0.1b0/.gitignore

@@ -0,0 +1,114 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+*.png
+*.dat
+*.idea
+*.DS_Store
+# C extensions
+*.so
+out_*
+*_version.py
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+.static_storage/
+.media/
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+docs/build/
+docs/source/api/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# VSCode
+.vscode/

pywavelet-0.0.1b0/.pre-commit-config.yaml

@@ -0,0 +1,24 @@
+repos:
+  - repo: https://github.com/Lucas-C/pre-commit-hooks
+    rev: v1.3.1
+    hooks:
+      - id: forbid-crlf
+      - id: remove-crlf
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-merge-conflict
+      - id: check-yaml
+        args: [ --unsafe ]
+  - repo: https://github.com/pre-commit/mirrors-isort
+    rev: v5.10.1
+    hooks:
+      - id: isort
+        args: ["--profile", "black"]
+  - repo: https://github.com/ambv/black
+    rev: 22.12.0
+    hooks:
+      - id: black
+        language_version: python3.8

pywavelet-0.0.1b0/CHANGELOG.rst

@@ -0,0 +1,10 @@
+.. _change-log-label:
+
+Change Log
+==========
+
+Version History
+---------------
+
+0.0.1
+    * Project created.

pywavelet-0.0.1b0/CITATION.cff

@@ -0,0 +1,28 @@
+cff-version: 1.2.0
+title: pywavelet
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - given-names: pywavelet
+    family-names: pywavelet
+    email: pywavelet@aut.ac.nz
+    affiliation: >-
+      Science Centre 303S, 38 Princes st,
+      Auckland, 1010, New Zealand
+    orcid: 'https://orcid.org/0000-0002-4146-1132'
+identifiers:
+  - type: url
+    value: ''
+    description: The paper describing the method behind this work.
+repository-code: 'https://github.com/avivajpeyi/pywavelet'
+url: 'http://avivajpeyi.github.io/pywavelet/'
+repository-artifact: 'https://pypi.org/project/pywavelet/'
+abstract: >-
+  Source code for the pywavelet package (for WDM wavelet analysis).
+keywords:
+  - GW
+  - Bayesian Inference
+  - WDM
+license: MIT

pywavelet-0.0.1b0/PKG-INFO

@@ -0,0 +1,34 @@
+Metadata-Version: 2.1
+Name: pywavelet
+Version: 0.0.1b0
+Summary: WDM wavelet transform your timeseries!
+Author-email: Pywavelet Team <pywavelet@gmail.com>
+Project-URL: Homepage, https://github.com/pypa/pywavelet
+Project-URL: Bug Reports, https://github.com/pypa/pywavelet/issues
+Project-URL: Funding, https://donate.pypi.org
+Project-URL: Say Thanks!, http://saythanks.io/to/example
+Project-URL: Source, https://github.com/pypa/pywavelet/
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3.8
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+Requires-Dist: numpy
+Requires-Dist: numba
+Requires-Dist: matplotlib
+Requires-Dist: tqdm
+Requires-Dist: loguru
+Requires-Dist: bilby
+Provides-Extra: dev
+Requires-Dist: pytest>=6.0; extra == "dev"
+Requires-Dist: pytest-cov>=4.1.0; extra == "dev"
+Requires-Dist: pre-commit; extra == "dev"
+Requires-Dist: flake8>=5.0.4; extra == "dev"
+Requires-Dist: black>=22.12.0; extra == "dev"
+Requires-Dist: isort; extra == "dev"
+Requires-Dist: mypy; extra == "dev"
+Requires-Dist: pycbc; extra == "dev"
+Requires-Dist: bilby; extra == "dev"
+Requires-Dist: jupyter-book; extra == "dev"

pywavelet-0.0.1b0/README.rst

@@ -0,0 +1,29 @@
+pywavelet
+#########
+.. image:: https://coveralls.io/repos/github/avivajpeyi/pywavelet/badge.svg?branch=main
+:target: https://coveralls.io/github/avivajpeyi/pywavelet?branch=main
+
+
+
+WDM Wavelet transform
+
+
+Quickstart
+==========
+
+pywavelet is available on PyPI and can be installed with `pip <https://pip.pypa.io>`_.
+
+.. code-block:: console
+
+    $ pip install pywavelet
+
+After installing pywavelet you can use it like any other Python module.
+
+Here is a simple example:
+
+.. code-block:: python
+
+    import pywavelet
+    # Fill this section in with the common use-case.
+
+The `API Reference <http://pywavelet.readthedocs.io>`_ provides API-level documentation.

pywavelet-0.0.1b0/docs/_config.yml

@@ -0,0 +1,32 @@
+# Book settings
+# Learn more at https://jupyterbook.org/customize/config.html
+
+title: My sample book
+author: The Jupyter Book Community
+logo: logo.png
+
+# Force re-execution of notebooks on each build.
+# See https://jupyterbook.org/content/execute.html
+execute:
+  execute_notebooks: 'off'
+
+# Define the name of the latex output file for PDF builds
+latex:
+  latex_documents:
+    targetname: book.tex
+
+# Add a bibtex file so that we can create citations
+bibtex_bibfiles:
+  - references.bib
+
+# Information about where the book exists on the web
+repository:
+  url: https://github.com/executablebooks/jupyter-book  # Online location of your book
+  path_to_book: docs  # Optional path to your book, relative to the repository root
+  branch: master  # Which branch of the repository should be used when creating links (optional)
+
+# Add GitHub buttons to your book
+# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository
+html:
+  use_issues_button: true
+  use_repository_button: true

pywavelet-0.0.1b0/docs/_toc.yml

@@ -0,0 +1,8 @@
+# Table of contents
+# Learn more at https://jupyterbook.org/customize/toc.html
+
+format: jb-book
+root: intro
+chapters:
+- file: demos/roundtrip_demo
+- file: demos/lisa_mcmc_demo